RNA–Protein interactions for RNA: ENST00000631321.1

LINC00540-203, long intergenic non-protein coding RNA 540, humanhuman

TSL 2 BASIC

Gene LINC00540, Length 2,412 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-203ENST00000631321 VPS37CA5D8V6 355 aaPredicted RBP15.21■□□□□ 0.02
LINC00540-203ENST00000631321 CASP7P55210 303 aa15.21■□□□□ 0.02
LINC00540-203ENST00000631321 KRT32Q14532 448 aa15.21■□□□□ 0.02
LINC00540-203ENST00000631321 TAF6LQ9Y6J9 622 aa15.21■□□□□ 0.02
LINC00540-203ENST00000631321 DCCP43146 1447 aa15.2■□□□□ 0.02
LINC00540-203ENST00000631321 TFCP2Q12800 502 aa15.2■□□□□ 0.02
LINC00540-203ENST00000631321 GLI3P10071 1580 aa15.19■□□□□ 0.02
LINC00540-203ENST00000631321 HCLS1P14317 486 aaPredicted RBP15.19■□□□□ 0.02
LINC00540-203ENST00000631321 PKD1L3Q7Z443 1732 aa15.19■□□□□ 0.02
LINC00540-203ENST00000631321 KRT85P78386 507 aa15.19■□□□□ 0.02
LINC00540-203ENST00000631321 PLBD2Q8NHP8 589 aa15.19■□□□□ 0.02
LINC00540-203ENST00000631321 HAUS7Q99871 368 aa15.19■□□□□ 0.02
LINC00540-203ENST00000631321 PTMAP06454 111 aaKnown RBP15.18■□□□□ 0.02
LINC00540-203ENST00000631321 CDC37L1Q7L3B6 337 aa15.18■□□□□ 0.02
LINC00540-203ENST00000631321 UBE3BQ7Z3V4 1068 aa15.18■□□□□ 0.02
LINC00540-203ENST00000631321 TICAM2Q86XR7 235 aa15.18■□□□□ 0.02
LINC00540-203ENST00000631321 EDC3Q96F86 508 aaKnown RBP15.18■□□□□ 0.02
LINC00540-203ENST00000631321 USP25Q9UHP3 1055 aa15.18■□□□□ 0.02
LINC00540-203ENST00000631321 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP15.18■□□□□ 0.02
LINC00540-203ENST00000631321 TMEM94Q12767 1356 aa15.18■□□□□ 0.02
LINC00540-203ENST00000631321 TTC6Q86TZ1 520 aa15.18■□□□□ 0.02
LINC00540-203ENST00000631321 U3KPZ7 1027 aaPredicted RBP15.18■□□□□ 0.02
LINC00540-203ENST00000631321 KDM4AO75164 1064 aa15.17■□□□□ 0.02
LINC00540-203ENST00000631321 GIMAP6Q6P9H5 292 aa15.17■□□□□ 0.02
LINC00540-203ENST00000631321 ZNF609O15014 1411 aa15.17■□□□□ 0.02
LINC00540-203ENST00000631321 A0A087WZG4 1122 aa15.17■□□□□ 0.02
LINC00540-203ENST00000631321 ADCY5O95622 1261 aa15.17■□□□□ 0.02
LINC00540-203ENST00000631321 CSB-PGBD3P0DP91 1061 aa15.17■□□□□ 0.02
LINC00540-203ENST00000631321 ATF3P18847 181 aa15.17■□□□□ 0.02
LINC00540-203ENST00000631321 CPDO75976 1380 aa15.17■□□□□ 0.02
LINC00540-203ENST00000631321 TNS3Q68CZ2 1445 aa15.17■□□□□ 0.02
LINC00540-203ENST00000631321 DTNBO60941 627 aa15.16■□□□□ 0.02
LINC00540-203ENST00000631321 KIAA2012Q0VF49 1180 aa15.16■□□□□ 0.02
LINC00540-203ENST00000631321 HSP90AA2PQ14568 343 aaPredicted RBP15.16■□□□□ 0.02
LINC00540-203ENST00000631321 JARID2Q92833 1246 aaPredicted RBP15.16■□□□□ 0.02
LINC00540-203ENST00000631321 TCEANC2Q96MN5 208 aa15.16■□□□□ 0.02
LINC00540-203ENST00000631321 DBNDD2Q9BQY9 259 aa15.16■□□□□ 0.02
LINC00540-203ENST00000631321 R3HCC1Q9Y3T6 440 aaKnown RBP15.16■□□□□ 0.02
LINC00540-203ENST00000631321 PARP4Q9UKK3 1724 aaKnown RBP15.16■□□□□ 0.02
LINC00540-203ENST00000631321 ARFGEF2Q9Y6D5 1785 aa15.16■□□□□ 0.02
LINC00540-203ENST00000631321 H7C1W4 665 aa15.16■□□□□ 0.02
LINC00540-203ENST00000631321 CABP4P57796 275 aa15.16■□□□□ 0.02
LINC00540-203ENST00000631321 MCMDC2Q4G0Z9 681 aa15.16■□□□□ 0.02
LINC00540-203ENST00000631321 GTF3C6Q969F1 213 aa15.16■□□□□ 0.02
LINC00540-203ENST00000631321 NEK1Q96PY6 1258 aa15.16■□□□□ 0.02
LINC00540-203ENST00000631321 SCAND2PQ9GZW5 306 aaPredicted RBP15.16■□□□□ 0.02
LINC00540-203ENST00000631321 PIP4K2AP48426 406 aaPredicted RBP15.15■□□□□ 0.02
LINC00540-203ENST00000631321 GPR108Q9NPR9 543 aa15.15■□□□□ 0.02
LINC00540-203ENST00000631321 SH3TC1Q8TE82 1336 aa15.15■□□□□ 0.02
LINC00540-203ENST00000631321 LAMB4A4D0S4 1761 aa15.15■□□□□ 0.02
LINC00540-203ENST00000631321 ATP5J2-PTCD1G3V325 749 aa15.15■□□□□ 0.02
LINC00540-203ENST00000631321 PTCD1O75127 700 aaKnown RBP15.15■□□□□ 0.02
LINC00540-203ENST00000631321 FOXO4P98177 505 aa15.15■□□□□ 0.02
LINC00540-203ENST00000631321 PALLDQ8WX93 1383 aa15.14■□□□□ 0.01
LINC00540-203ENST00000631321 CCDC192P0DO97 292 aa15.14■□□□□ 0.01
LINC00540-203ENST00000631321 KBTBD3Q8NAB2 608 aa15.14■□□□□ 0.01
LINC00540-203ENST00000631321 UBE2Q2Q8WVN8 375 aa15.14■□□□□ 0.01
LINC00540-203ENST00000631321 DDX17Q92841 729 aaKnown RBP15.14■□□□□ 0.01
LINC00540-203ENST00000631321 AFDNP55196 1824 aaKnown RBP15.14■□□□□ 0.01
LINC00540-203ENST00000631321 LMBR1LQ6UX01 489 aa15.14■□□□□ 0.01
LINC00540-203ENST00000631321 FERMT3Q86UX7 667 aa15.14■□□□□ 0.01
LINC00540-203ENST00000631321 ATG9AQ7Z3C6 839 aa15.13■□□□□ 0.01
LINC00540-203ENST00000631321 PIBF1Q8WXW3 757 aa15.13■□□□□ 0.01
LINC00540-203ENST00000631321 DNAJC2Q99543 621 aaKnown RBP15.13■□□□□ 0.01
LINC00540-203ENST00000631321 NBPF26B4DH59 902 aa15.13■□□□□ 0.01
LINC00540-203ENST00000631321 CYP21A2P08686 494 aa15.13■□□□□ 0.01
LINC00540-203ENST00000631321 LIG1P18858 919 aa15.13■□□□□ 0.01
LINC00540-203ENST00000631321 CHRNA2Q15822 529 aa15.13■□□□□ 0.01
LINC00540-203ENST00000631321 NBPF14Q5TI25 921 aa15.13■□□□□ 0.01
LINC00540-203ENST00000631321 NBPF10Q6P3W6 841 aaKnown RBP15.13■□□□□ 0.01
LINC00540-203ENST00000631321 NBPF15Q8N660 670 aa15.13■□□□□ 0.01
LINC00540-203ENST00000631321 CABLES1Q8TDN4 633 aa15.13■□□□□ 0.01
LINC00540-203ENST00000631321 LEO1Q8WVC0 666 aaPredicted RBP15.13■□□□□ 0.01
LINC00540-203ENST00000631321 SPATA31A3Q5VYP0 1347 aa15.12■□□□□ 0.01
LINC00540-203ENST00000631321 MAP3K11Q16584 847 aa15.12■□□□□ 0.01
LINC00540-203ENST00000631321 TPRNQ4KMQ1 711 aa15.12■□□□□ 0.01
LINC00540-203ENST00000631321 FAM173BQ6P4H8 233 aa15.12■□□□□ 0.01
LINC00540-203ENST00000631321 SASS6Q6UVJ0 657 aa15.12■□□□□ 0.01
LINC00540-203ENST00000631321 CCDC129Q6ZRS4 1044 aa15.12■□□□□ 0.01
LINC00540-203ENST00000631321 RBM43Q6ZSC3 357 aaKnown RBP15.12■□□□□ 0.01
LINC00540-203ENST00000631321 NUP62CLQ9H1M0 184 aa15.12■□□□□ 0.01
LINC00540-203ENST00000631321 HELLSQ9NRZ9 838 aa15.12■□□□□ 0.01
LINC00540-203ENST00000631321 HMGB1P09429 215 aaKnown RBP15.12■□□□□ 0.01
LINC00540-203ENST00000631321 RESTQ13127 1097 aa15.12■□□□□ 0.01
LINC00540-203ENST00000631321 STK3Q13188 491 aa15.12■□□□□ 0.01
LINC00540-203ENST00000631321 Q6ZUG5 572 aa15.12■□□□□ 0.01
LINC00540-203ENST00000631321 SEC62Q99442 399 aaKnown RBP15.12■□□□□ 0.01
LINC00540-203ENST00000631321 LLPHQ9BRT6 129 aaKnown RBP15.12■□□□□ 0.01
LINC00540-203ENST00000631321 DDX19AQ9NUU7 478 aaKnown RBP15.12■□□□□ 0.01
LINC00540-203ENST00000631321 NDUFB9Q9Y6M9 179 aa15.12■□□□□ 0.01
LINC00540-203ENST00000631321 AP5Z1O43299 807 aa15.11■□□□□ 0.01
LINC00540-203ENST00000631321 DDX46Q7L014 1031 aaKnown RBP15.11■□□□□ 0.01
LINC00540-203ENST00000631321 SMARCC2Q8TAQ2 1214 aa15.11■□□□□ 0.01
LINC00540-203ENST00000631321 FAM200AQ8TCP9 573 aa15.11■□□□□ 0.01
LINC00540-203ENST00000631321 SPATA32Q96LK8 384 aa15.11■□□□□ 0.01
LINC00540-203ENST00000631321 DSCC1Q9BVC3 393 aa15.11■□□□□ 0.01
LINC00540-203ENST00000631321 CWC25Q9NXE8 425 aaPredicted RBP15.11■□□□□ 0.01
LINC00540-203ENST00000631321 JAK2O60674 1132 aa15.11■□□□□ 0.01
LINC00540-203ENST00000631321 CHGBP05060 677 aa15.11■□□□□ 0.01
LINC00540-203ENST00000631321 IL15P40933 162 aaPredicted RBP15.11■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms