RNA–Protein interactions for RNA: ENST00000627317.1

PNKP-221, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 767 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-221ENST00000627317 CWF19L2Q2TBE0 894 aaKnown RBP18.62■□□□□ 0.57
PNKP-221ENST00000627317 ZKSCAN2Q63HK3 967 aa18.62■□□□□ 0.57
PNKP-221ENST00000627317 ATF7IPQ6VMQ6 1270 aa18.62■□□□□ 0.57
PNKP-221ENST00000627317 RTKN2Q8IZC4 609 aa18.62■□□□□ 0.57
PNKP-221ENST00000627317 RBM17Q96I25 401 aaKnown RBP18.62■□□□□ 0.57
PNKP-221ENST00000627317 ABCC4O15439 1325 aa18.62■□□□□ 0.57
PNKP-221ENST00000627317 KDM2BQ8NHM5 1336 aa18.62■□□□□ 0.57
PNKP-221ENST00000627317 DICER1Q9UPY3 1922 aaKnown RBP18.61■□□□□ 0.57
PNKP-221ENST00000627317 COL4A1P02462 1669 aa18.61■□□□□ 0.57
PNKP-221ENST00000627317 COL4A5P29400 1685 aa18.61■□□□□ 0.57
PNKP-221ENST00000627317 GLTPD2A6NH11 291 aa18.61■□□□□ 0.57
PNKP-221ENST00000627317 BEND3Q5T5X7 828 aa18.61■□□□□ 0.57
PNKP-221ENST00000627317 FAM89AQ96GI7 184 aa18.61■□□□□ 0.57
PNKP-221ENST00000627317 PSMD1Q99460 953 aa18.61■□□□□ 0.57
PNKP-221ENST00000627317 SRCIN1Q9C0H9 1055 aa18.61■□□□□ 0.57
PNKP-221ENST00000627317 PPEF1O14829 653 aaPredicted RBP18.6■□□□□ 0.57
PNKP-221ENST00000627317 TRIM27P14373 513 aa18.6■□□□□ 0.57
PNKP-221ENST00000627317 CC2D2BQ6DHV5 1058 aa18.6■□□□□ 0.57
PNKP-221ENST00000627317 ALDH1L1O75891 902 aa18.59■□□□□ 0.57
PNKP-221ENST00000627317 FTSJ3Q8IY81 847 aaKnown RBP18.59■□□□□ 0.57
PNKP-221ENST00000627317 ZNF277Q9NRM2 450 aaPredicted RBP18.59■□□□□ 0.57
PNKP-221ENST00000627317 WDR90Q96KV7 1748 aa18.59■□□□□ 0.57
PNKP-221ENST00000627317 CCDC88AQ3V6T2 1871 aa18.58■□□□□ 0.57
PNKP-221ENST00000627317 LRRC37AA6NMS7 1700 aa18.58■□□□□ 0.57
PNKP-221ENST00000627317 CCT4P50991 539 aaKnown RBP18.58■□□□□ 0.56
PNKP-221ENST00000627317 GCKRQ14397 625 aa18.58■□□□□ 0.56
PNKP-221ENST00000627317 SF3B3Q15393 1217 aaKnown RBP18.58■□□□□ 0.56
PNKP-221ENST00000627317 RTL5Q5HYW3 569 aaPredicted RBP18.58■□□□□ 0.56
PNKP-221ENST00000627317 GOLGA6L2Q8N9W4 650 aaPredicted RBP18.58■□□□□ 0.56
PNKP-221ENST00000627317 ZBTB38Q8NAP3 1195 aaPredicted RBP18.58■□□□□ 0.56
PNKP-221ENST00000627317 CLUAP1Q96AJ1 413 aa18.58■□□□□ 0.56
PNKP-221ENST00000627317 ATP6V0A2Q9Y487 856 aa18.58■□□□□ 0.56
PNKP-221ENST00000627317 POTECB2RU33 542 aa18.57■□□□□ 0.56
PNKP-221ENST00000627317 TOMM70O94826 608 aa18.57■□□□□ 0.56
PNKP-221ENST00000627317 PCCAP05165 728 aaPredicted RBP18.57■□□□□ 0.56
PNKP-221ENST00000627317 GRIPAP1Q4V328 841 aa18.57■□□□□ 0.56
PNKP-221ENST00000627317 TNNQ9UQP3 1299 aa18.57■□□□□ 0.56
PNKP-221ENST00000627317 DUOX1Q9NRD9 1551 aa18.56■□□□□ 0.56
PNKP-221ENST00000627317 IRS4O14654 1257 aaPredicted RBP18.56■□□□□ 0.56
PNKP-221ENST00000627317 GRAPQ13588 217 aa18.56■□□□□ 0.56
PNKP-221ENST00000627317 UBE3BQ7Z3V4 1068 aa18.56■□□□□ 0.56
PNKP-221ENST00000627317 GRAPLQ8TC17 118 aaPredicted RBP18.56■□□□□ 0.56
PNKP-221ENST00000627317 RRAGCQ9HB90 399 aa18.56■□□□□ 0.56
PNKP-221ENST00000627317 BBOX1O75936 387 aa18.55■□□□□ 0.56
PNKP-221ENST00000627317 MS4A1P11836 297 aa18.55■□□□□ 0.56
PNKP-221ENST00000627317 HSP90B1P14625 803 aaKnown RBP18.55■□□□□ 0.56
PNKP-221ENST00000627317 IARSP41252 1262 aaKnown RBP18.55■□□□□ 0.56
PNKP-221ENST00000627317 DZIP1LQ8IYY4 767 aaKnown RBP18.55■□□□□ 0.56
PNKP-221ENST00000627317 JARID2Q92833 1246 aaPredicted RBP18.55■□□□□ 0.56
PNKP-221ENST00000627317 C9orf78Q9NZ63 289 aaPredicted RBP18.55■□□□□ 0.56
PNKP-221ENST00000627317 ZNF541Q9H0D2 1346 aa18.54■□□□□ 0.56
PNKP-221ENST00000627317 GRM8O00222 908 aa18.54■□□□□ 0.56
PNKP-221ENST00000627317 PLIN1O60240 522 aa18.54■□□□□ 0.56
PNKP-221ENST00000627317 DDX46Q7L014 1031 aaKnown RBP18.54■□□□□ 0.56
PNKP-221ENST00000627317 RBM46Q8TBY0 533 aaKnown RBP18.54■□□□□ 0.56
PNKP-221ENST00000627317 RTFDC1Q9BY42 306 aaPredicted RBP18.54■□□□□ 0.56
PNKP-221ENST00000627317 CDHR2Q9BYE9 1310 aa18.53■□□□□ 0.56
PNKP-221ENST00000627317 FZD9O00144 591 aa18.53■□□□□ 0.56
PNKP-221ENST00000627317 LTBP1Q14766 1721 aa18.53■□□□□ 0.56
PNKP-221ENST00000627317 INTS3Q68E01 1043 aaKnown RBP18.53■□□□□ 0.56
PNKP-221ENST00000627317 SP8Q8IXZ3 490 aa18.53■□□□□ 0.56
PNKP-221ENST00000627317 L3MBTL3Q96JM7 780 aaPredicted RBP18.53■□□□□ 0.56
PNKP-221ENST00000627317 H7C1W4 665 aa18.52■□□□□ 0.56
PNKP-221ENST00000627317 VEGFAP15692 232 aaPredicted RBP18.52■□□□□ 0.56
PNKP-221ENST00000627317 DPY19L2Q6NUT2 758 aa18.52■□□□□ 0.56
PNKP-221ENST00000627317 TMEM57Q8N5G2 664 aa18.52■□□□□ 0.56
PNKP-221ENST00000627317 CELF1Q92879 486 aaKnown RBP18.52■□□□□ 0.56
PNKP-221ENST00000627317 DDNO94850 711 aaPredicted RBP18.51■□□□□ 0.55
PNKP-221ENST00000627317 RLBP1P12271 317 aa18.51■□□□□ 0.55
PNKP-221ENST00000627317 HSPA6P17066 643 aa18.51■□□□□ 0.55
PNKP-221ENST00000627317 RRP1P56182 461 aaKnown RBP18.51■□□□□ 0.55
PNKP-221ENST00000627317 TMC4Q7Z404 712 aa18.51■□□□□ 0.55
PNKP-221ENST00000627317 ITPRIPQ8IWB1 547 aa18.51■□□□□ 0.55
PNKP-221ENST00000627317 TAF1P21675 1872 aa18.5■□□□□ 0.55
PNKP-221ENST00000627317 PDE8AO60658 829 aa18.5■□□□□ 0.55
PNKP-221ENST00000627317 PANK1Q8TE04 598 aa18.5■□□□□ 0.55
PNKP-221ENST00000627317 CASP7P55210 303 aa18.49■□□□□ 0.55
PNKP-221ENST00000627317 FSTL1Q12841 308 aa18.49■□□□□ 0.55
PNKP-221ENST00000627317 VPS33BQ9H267 617 aa18.49■□□□□ 0.55
PNKP-221ENST00000627317 UTYO14607 1347 aa18.49■□□□□ 0.55
PNKP-221ENST00000627317 RTL9Q8NET4 1388 aa18.48■□□□□ 0.55
PNKP-221ENST00000627317 NBPF7P0C2Y1 421 aaPredicted RBP18.48■□□□□ 0.55
PNKP-221ENST00000627317 UBTFL1P0CB47 393 aaPredicted RBP18.48■□□□□ 0.55
PNKP-221ENST00000627317 CTSWP56202 376 aa18.48■□□□□ 0.55
PNKP-221ENST00000627317 USP44Q9H0E7 712 aa18.48■□□□□ 0.55
PNKP-221ENST00000627317 SEC31BQ9NQW1 1179 aa18.48■□□□□ 0.55
PNKP-221ENST00000627317 MYH3P11055 1940 aa18.48■□□□□ 0.55
PNKP-221ENST00000627317 PDE3AQ14432 1141 aa18.47■□□□□ 0.55
PNKP-221ENST00000627317 AOC3Q16853 763 aa18.47■□□□□ 0.55
PNKP-221ENST00000627317 CCDC152Q4G0S7 254 aa18.47■□□□□ 0.55
PNKP-221ENST00000627317 DPP8Q6V1X1 898 aaPredicted RBP18.47■□□□□ 0.55
PNKP-221ENST00000627317 C16orf71Q8IYS4 520 aaPredicted RBP18.47■□□□□ 0.55
PNKP-221ENST00000627317 MEIS3Q99687 375 aa18.47■□□□□ 0.55
PNKP-221ENST00000627317 PLA2G12BQ9BX93 195 aa18.47■□□□□ 0.55
PNKP-221ENST00000627317 GNAI3P08754 354 aa18.46■□□□□ 0.55
PNKP-221ENST00000627317 KIAA2012Q0VF49 1180 aa18.46■□□□□ 0.55
PNKP-221ENST00000627317 GPC2Q8N158 579 aa18.46■□□□□ 0.55
PNKP-221ENST00000627317 LARGE2Q8N3Y3 721 aa18.46■□□□□ 0.55
PNKP-221ENST00000627317 MPNDQ8N594 471 aa18.46■□□□□ 0.55
PNKP-221ENST00000627317 JDP2Q8WYK2 163 aa18.46■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms