RNA–Protein interactions for RNA: ENST00000625216.2

PNKP-217, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 629 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-217ENST00000625216 CWC25Q9NXE8 425 aaPredicted RBP16.15■□□□□ 0.18
PNKP-217ENST00000625216 FANCIQ9NVI1 1328 aa16.15■□□□□ 0.18
PNKP-217ENST00000625216 SLC4A2P04920 1241 aa16.14■□□□□ 0.17
PNKP-217ENST00000625216 PCCAP05165 728 aaPredicted RBP16.14■□□□□ 0.17
PNKP-217ENST00000625216 EIF6P56537 245 aaKnown RBP16.14■□□□□ 0.17
PNKP-217ENST00000625216 GPC2Q8N158 579 aa16.14■□□□□ 0.17
PNKP-217ENST00000625216 LARGE2Q8N3Y3 721 aa16.14■□□□□ 0.17
PNKP-217ENST00000625216 MPNDQ8N594 471 aa16.14■□□□□ 0.17
PNKP-217ENST00000625216 MAP3K2Q9Y2U5 619 aa16.14■□□□□ 0.17
PNKP-217ENST00000625216 DICER1Q9UPY3 1922 aaKnown RBP16.13■□□□□ 0.17
PNKP-217ENST00000625216 PI4KAP2A4QPH2 592 aa16.13■□□□□ 0.17
PNKP-217ENST00000625216 NEXNQ0ZGT2 675 aa16.13■□□□□ 0.17
PNKP-217ENST00000625216 DPP8Q6V1X1 898 aaPredicted RBP16.13■□□□□ 0.17
PNKP-217ENST00000625216 PI4KAP1Q8N8J0 262 aa16.13■□□□□ 0.17
PNKP-217ENST00000625216 MYH16Q9H6N6 1097 aa16.13■□□□□ 0.17
PNKP-217ENST00000625216 TIAM2Q8IVF5 1701 aa16.13■□□□□ 0.17
PNKP-217ENST00000625216 WDR90Q96KV7 1748 aa16.13■□□□□ 0.17
PNKP-217ENST00000625216 ANKRD36CQ5JPF3 1778 aa16.13■□□□□ 0.17
PNKP-217ENST00000625216 CCDC88AQ3V6T2 1871 aa16.12■□□□□ 0.17
PNKP-217ENST00000625216 PPIP5K2O43314 1243 aa16.12■□□□□ 0.17
PNKP-217ENST00000625216 RTL5Q5HYW3 569 aaPredicted RBP16.12■□□□□ 0.17
PNKP-217ENST00000625216 NIM1KQ8IY84 436 aa16.12■□□□□ 0.17
PNKP-217ENST00000625216 ZNF428Q96B54 188 aa16.12■□□□□ 0.17
PNKP-217ENST00000625216 ZNF541Q9H0D2 1346 aa16.12■□□□□ 0.17
PNKP-217ENST00000625216 CACNA1SQ13698 1873 aa16.12■□□□□ 0.17
PNKP-217ENST00000625216 VAMP4O75379 141 aa16.11■□□□□ 0.17
PNKP-217ENST00000625216 TAF1DQ9H5J8 278 aaPredicted RBP16.11■□□□□ 0.17
PNKP-217ENST00000625216 HACL1Q9UJ83 578 aa16.11■□□□□ 0.17
PNKP-217ENST00000625216 SUPT16HQ9Y5B9 1047 aaKnown RBP16.11■□□□□ 0.17
PNKP-217ENST00000625216 PDE8AO60658 829 aa16.1■□□□□ 0.17
PNKP-217ENST00000625216 RPS8P62241 208 aaKnown RBP16.1■□□□□ 0.17
PNKP-217ENST00000625216 EXOSC9Q06265 439 aaKnown RBP16.1■□□□□ 0.17
PNKP-217ENST00000625216 CCDC152Q4G0S7 254 aa16.1■□□□□ 0.17
PNKP-217ENST00000625216 CHADLQ6NUI6 762 aa16.1■□□□□ 0.17
PNKP-217ENST00000625216 PNMA8AQ86V59 439 aaPredicted RBP16.1■□□□□ 0.17
PNKP-217ENST00000625216 DNAJC5GQ8N7S2 189 aa16.1■□□□□ 0.17
PNKP-217ENST00000625216 RCAN3Q9UKA8 241 aa16.1■□□□□ 0.17
PNKP-217ENST00000625216 IGKV5-2P06315 115 aa16.09■□□□□ 0.17
PNKP-217ENST00000625216 KIAA2012Q0VF49 1180 aa16.09■□□□□ 0.17
PNKP-217ENST00000625216 FLIIQ13045 1269 aa16.09■□□□□ 0.17
PNKP-217ENST00000625216 AOC3Q16853 763 aa16.09■□□□□ 0.17
PNKP-217ENST00000625216 G2E3Q7L622 706 aa16.09■□□□□ 0.17
PNKP-217ENST00000625216 LDHDQ86WU2 507 aa16.09■□□□□ 0.17
PNKP-217ENST00000625216 CELF1Q92879 486 aaKnown RBP16.09■□□□□ 0.17
PNKP-217ENST00000625216 ZNRF3Q9ULT6 936 aa16.09■□□□□ 0.17
PNKP-217ENST00000625216 CDHR2Q9BYE9 1310 aa16.09■□□□□ 0.17
PNKP-217ENST00000625216 EPHX2P34913 555 aa16.08■□□□□ 0.16
PNKP-217ENST00000625216 SLC51AQ86UW1 340 aa16.08■□□□□ 0.16
PNKP-217ENST00000625216 GJA3Q9Y6H8 435 aa16.08■□□□□ 0.16
PNKP-217ENST00000625216 NEURL1BA8MQ27 555 aa16.07■□□□□ 0.16
PNKP-217ENST00000625216 LMOD1P29536 600 aaPredicted RBP16.07■□□□□ 0.16
PNKP-217ENST00000625216 FKBP5Q13451 457 aaPredicted RBP16.07■□□□□ 0.16
PNKP-217ENST00000625216 NSFL1CQ9UNZ2 370 aaKnown RBP16.07■□□□□ 0.16
PNKP-217ENST00000625216 DNAAF4Q8WXU2 420 aa16.06■□□□□ 0.16
PNKP-217ENST00000625216 H7C1W4 665 aa16.05■□□□□ 0.16
PNKP-217ENST00000625216 POTEIP0CG38 1075 aa16.05■□□□□ 0.16
PNKP-217ENST00000625216 POTEJP0CG39 1038 aa16.05■□□□□ 0.16
PNKP-217ENST00000625216 CXCL9Q07325 125 aa16.05■□□□□ 0.16
PNKP-217ENST00000625216 TNIP1Q15025 636 aa16.05■□□□□ 0.16
PNKP-217ENST00000625216 WASHC4Q2M389 1173 aa16.05■□□□□ 0.16
PNKP-217ENST00000625216 CWF19L2Q2TBE0 894 aaKnown RBP16.05■□□□□ 0.16
PNKP-217ENST00000625216 EAPPQ56P03 285 aaPredicted RBP16.05■□□□□ 0.16
PNKP-217ENST00000625216 LINS1Q8NG48 757 aa16.05■□□□□ 0.16
PNKP-217ENST00000625216 JARID2Q92833 1246 aaPredicted RBP16.05■□□□□ 0.16
PNKP-217ENST00000625216 EYA3Q99504 573 aa16.05■□□□□ 0.16
PNKP-217ENST00000625216 SEC31BQ9NQW1 1179 aa16.05■□□□□ 0.16
PNKP-217ENST00000625216 PODXL2Q9NZ53 605 aa16.05■□□□□ 0.16
PNKP-217ENST00000625216 CTSWP56202 376 aa16.04■□□□□ 0.16
PNKP-217ENST00000625216 GCKRQ14397 625 aa16.04■□□□□ 0.16
PNKP-217ENST00000625216 CIAPIN1Q6FI81 312 aa16.04■□□□□ 0.16
PNKP-217ENST00000625216 KLRG1Q96E93 195 aa16.04■□□□□ 0.16
PNKP-217ENST00000625216 CLEC11AQ9Y240 323 aa16.04■□□□□ 0.16
PNKP-217ENST00000625216 GTF3C3Q9Y5Q9 886 aa16.04■□□□□ 0.16
PNKP-217ENST00000625216 SCN4AP35499 1836 aa16.03■□□□□ 0.16
PNKP-217ENST00000625216 COL4A5P29400 1685 aa16.03■□□□□ 0.16
PNKP-217ENST00000625216 C6orf229H3BNL8 230 aa16.03■□□□□ 0.16
PNKP-217ENST00000625216 SCNN1DP51172 638 aa16.03■□□□□ 0.16
PNKP-217ENST00000625216 GPSM2P81274 684 aa16.03■□□□□ 0.16
PNKP-217ENST00000625216 USP50Q70EL3 339 aaPredicted RBP16.03■□□□□ 0.16
PNKP-217ENST00000625216 ANKRD18AQ8IVF6 992 aa16.03■□□□□ 0.16
PNKP-217ENST00000625216 TTLL11Q8NHH1 800 aa16.03■□□□□ 0.16
PNKP-217ENST00000625216 CDC5LQ99459 802 aaKnown RBP16.03■□□□□ 0.16
PNKP-217ENST00000625216 PLA2G12BQ9BX93 195 aa16.03■□□□□ 0.16
PNKP-217ENST00000625216 POLLQ9UGP5 575 aa16.03■□□□□ 0.16
PNKP-217ENST00000625216 DDX60Q8IY21 1712 aaKnown RBP16.02■□□□□ 0.16
PNKP-217ENST00000625216 RRP1P56182 461 aaKnown RBP16.02■□□□□ 0.16
PNKP-217ENST00000625216 HTRA3P83110 453 aa16.02■□□□□ 0.16
PNKP-217ENST00000625216 UBE3BQ7Z3V4 1068 aa16.02■□□□□ 0.16
PNKP-217ENST00000625216 TBC1D16Q8TBP0 767 aa16.02■□□□□ 0.16
PNKP-217ENST00000625216 ZC3H12CQ9C0D7 883 aaKnown RBP16.02■□□□□ 0.16
PNKP-217ENST00000625216 LAMB2P55268 1798 aa16.02■□□□□ 0.15
PNKP-217ENST00000625216 RTL9Q8NET4 1388 aa16.01■□□□□ 0.15
PNKP-217ENST00000625216 ITGBL1O95965 494 aaPredicted RBP16.01■□□□□ 0.15
PNKP-217ENST00000625216 EPS15P42566 896 aa16.01■□□□□ 0.15
PNKP-217ENST00000625216 CCDC85AQ96PX6 553 aaPredicted RBP16.01■□□□□ 0.15
PNKP-217ENST00000625216 CREBZFQ9NS37 354 aa16.01■□□□□ 0.15
PNKP-217ENST00000625216 ADARB2Q9NS39 739 aaKnown RBP16.01■□□□□ 0.15
PNKP-217ENST00000625216 GPRC5DQ9NZD1 345 aa16.01■□□□□ 0.15
PNKP-217ENST00000625216 ANKIB1Q9P2G1 1089 aa16.01■□□□□ 0.15
PNKP-217ENST00000625216 GGA1Q9UJY5 639 aa16.01■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms