RNA–Protein interactions for RNA: ENST00000624931.1

PCF11-207, Transcript of PCF11, cleavage and polyadenylation factor subunit, humanhuman

Gene PCF11, Length 1,720 nt, Biotype TEC, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11-207ENST00000624931 MSNP26038 577 aaKnown RBP21.3■■□□□ 1
PCF11-207ENST00000624931 MTX1Q13505 466 aa21.3■■□□□ 1
PCF11-207ENST00000624931 PDZRN4Q6ZMN7 1036 aaPredicted RBP21.3■■□□□ 1
PCF11-207ENST00000624931 UBN2Q6ZU65 1347 aa21.29■■□□□ 1
PCF11-207ENST00000624931 ERC2O15083 957 aa21.29■■□□□ 1
PCF11-207ENST00000624931 GNPATO15228 680 aa21.29■■□□□ 1
PCF11-207ENST00000624931 MCTP1Q6DN14 999 aa21.29■■□□□ 1
PCF11-207ENST00000624931 ILDR1Q86SU0 546 aaPredicted RBP21.29■■□□□ 1
PCF11-207ENST00000624931 PA2G4Q9UQ80 394 aaKnown RBP21.29■■□□□ 1
PCF11-207ENST00000624931 ERVV-1B6SEH8 477 aa21.29■■□□□ 1
PCF11-207ENST00000624931 SDSP20132 328 aa21.29■■□□□ 1
PCF11-207ENST00000624931 NLRP10Q86W26 655 aa21.29■■□□□ 1
PCF11-207ENST00000624931 C16orf71Q8IYS4 520 aaPredicted RBP21.29■■□□□ 1
PCF11-207ENST00000624931 OTUD7AQ8TE49 926 aaPredicted RBP21.29■■□□□ 1
PCF11-207ENST00000624931 SCN7AQ01118 1682 aa21.28■■□□□ 1
PCF11-207ENST00000624931 MCM5P33992 734 aa21.28■■□□□ 1
PCF11-207ENST00000624931 SYNE4Q8N205 404 aa21.28■■□□□ 1
PCF11-207ENST00000624931 OFD1O75665 1012 aa21.27■■□□□ 1
PCF11-207ENST00000624931 SURF6O75683 361 aaKnown RBP21.27■■□□□ 1
PCF11-207ENST00000624931 ZSCAN23Q3MJ62 389 aa21.27■■□□□ 1
PCF11-207ENST00000624931 MBD3O95983 291 aa21.26■□□□□ 0.99
PCF11-207ENST00000624931 TRIM28Q13263 835 aaKnown RBP21.26■□□□□ 0.99
PCF11-207ENST00000624931 HSP90AB3PQ58FF7 597 aa21.26■□□□□ 0.99
PCF11-207ENST00000624931 RC3H1Q5TC82 1133 aaKnown RBP21.26■□□□□ 0.99
PCF11-207ENST00000624931 FAM89AQ96GI7 184 aa21.26■□□□□ 0.99
PCF11-207ENST00000624931 HDAC5Q9UQL6 1122 aa21.26■□□□□ 0.99
PCF11-207ENST00000624931 TNS1Q9HBL0 1735 aaKnown RBP21.26■□□□□ 0.99
PCF11-207ENST00000624931 EPB41L2O43491 1005 aaKnown RBP21.26■□□□□ 0.99
PCF11-207ENST00000624931 FOXO4P98177 505 aa21.26■□□□□ 0.99
PCF11-207ENST00000624931 KLHDC4Q8TBB5 520 aa21.26■□□□□ 0.99
PCF11-207ENST00000624931 C4AP0C0L4 1744 aa21.25■□□□□ 0.99
PCF11-207ENST00000624931 RPS6KA4O75676 772 aa21.25■□□□□ 0.99
PCF11-207ENST00000624931 ZNF34Q8IZ26 560 aa21.25■□□□□ 0.99
PCF11-207ENST00000624931 PDLIM2Q96JY6 352 aa21.25■□□□□ 0.99
PCF11-207ENST00000624931 SRP68Q9UHB9 627 aaKnown RBP21.25■□□□□ 0.99
PCF11-207ENST00000624931 FAM177BA6PVY3 158 aa21.24■□□□□ 0.99
PCF11-207ENST00000624931 PHF14O94880 888 aa21.24■□□□□ 0.99
PCF11-207ENST00000624931 MCCP23508 829 aa21.24■□□□□ 0.99
PCF11-207ENST00000624931 RABL6Q3YEC7 729 aaPredicted RBP21.24■□□□□ 0.99
PCF11-207ENST00000624931 PCCAP05165 728 aaPredicted RBP21.24■□□□□ 0.99
PCF11-207ENST00000624931 CAVIN1Q6NZI2 390 aaKnown RBP21.24■□□□□ 0.99
PCF11-207ENST00000624931 LMBR1LQ6UX01 489 aa21.24■□□□□ 0.99
PCF11-207ENST00000624931 ANAPC15P60006 121 aa21.23■□□□□ 0.99
PCF11-207ENST00000624931 PROM2Q8N271 834 aa21.23■□□□□ 0.99
PCF11-207ENST00000624931 ZBTB38Q8NAP3 1195 aaPredicted RBP21.23■□□□□ 0.99
PCF11-207ENST00000624931 LRRCC1Q9C099 1032 aa21.23■□□□□ 0.99
PCF11-207ENST00000624931 IL1RAPL2Q9NP60 686 aa21.23■□□□□ 0.99
PCF11-207ENST00000624931 NOL7Q9UMY1 257 aaKnown RBP21.23■□□□□ 0.99
PCF11-207ENST00000624931 CHMP3Q9Y3E7 222 aa21.23■□□□□ 0.99
PCF11-207ENST00000624931 ZNF500O60304 480 aaPredicted RBP21.22■□□□□ 0.99
PCF11-207ENST00000624931 NCLP19338 710 aaKnown RBP21.22■□□□□ 0.99
PCF11-207ENST00000624931 RFX5P48382 616 aaPredicted RBP21.22■□□□□ 0.99
PCF11-207ENST00000624931 SUSD4Q5VX71 490 aa21.22■□□□□ 0.99
PCF11-207ENST00000624931 AK7Q96M32 723 aa21.22■□□□□ 0.99
PCF11-207ENST00000624931 SIL1Q9H173 461 aa21.22■□□□□ 0.99
PCF11-207ENST00000624931 RTCBQ9Y3I0 505 aaKnown RBP21.22■□□□□ 0.99
PCF11-207ENST00000624931 UBR3Q6ZT12 1888 aa21.22■□□□□ 0.99
PCF11-207ENST00000624931 APBA3O96018 575 aa21.21■□□□□ 0.99
PCF11-207ENST00000624931 TXNRD1Q16881 649 aa21.21■□□□□ 0.99
PCF11-207ENST00000624931 CSPP1Q1MSJ5 1256 aa21.21■□□□□ 0.99
PCF11-207ENST00000624931 INTS4Q96HW7 963 aaKnown RBP21.21■□□□□ 0.99
PCF11-207ENST00000624931 BCL2L12Q9HB09 334 aa21.21■□□□□ 0.99
PCF11-207ENST00000624931 TRMT112Q9UI30 125 aaKnown RBP21.21■□□□□ 0.99
PCF11-207ENST00000624931 OS9Q13438 667 aaPredicted RBP21.21■□□□□ 0.99
PCF11-207ENST00000624931 USPL1Q5W0Q7 1092 aa21.21■□□□□ 0.99
PCF11-207ENST00000624931 LRSAM1Q6UWE0 723 aa21.21■□□□□ 0.99
PCF11-207ENST00000624931 IL17RAQ96F46 866 aa21.21■□□□□ 0.99
PCF11-207ENST00000624931 CCDC85AQ96PX6 553 aaPredicted RBP21.21■□□□□ 0.99
PCF11-207ENST00000624931 NIP7Q9Y221 180 aaKnown RBP eCLIP21.21■□□□□ 0.99
PCF11-207ENST00000624931 KLHL34Q8N239 644 aa21.2■□□□□ 0.98
PCF11-207ENST00000624931 RHPN1Q8TCX5 695 aa21.2■□□□□ 0.98
PCF11-207ENST00000624931 PDCL3Q9H2J4 239 aa21.2■□□□□ 0.98
PCF11-207ENST00000624931 PRPF40AO75400 957 aaKnown RBP21.19■□□□□ 0.98
PCF11-207ENST00000624931 SLC27A3Q5K4L6 730 aa21.19■□□□□ 0.98
PCF11-207ENST00000624931 ARHGEF1Q92888 912 aaKnown RBP21.19■□□□□ 0.98
PCF11-207ENST00000624931 SYAP1Q96A49 352 aaPredicted RBP21.19■□□□□ 0.98
PCF11-207ENST00000624931 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP21.19■□□□□ 0.98
PCF11-207ENST00000624931 PDE1AP54750 535 aa21.18■□□□□ 0.98
PCF11-207ENST00000624931 TSHZ3Q63HK5 1081 aa21.18■□□□□ 0.98
PCF11-207ENST00000624931 BICDL1Q6ZP65 573 aa21.18■□□□□ 0.98
PCF11-207ENST00000624931 KIAA1211Q6ZU35 1233 aa21.18■□□□□ 0.98
PCF11-207ENST00000624931 MAP7D2Q96T17 732 aa21.18■□□□□ 0.98
PCF11-207ENST00000624931 NARFQ9UHQ1 456 aa21.18■□□□□ 0.98
PCF11-207ENST00000624931 CDHR2Q9BYE9 1310 aa21.18■□□□□ 0.98
PCF11-207ENST00000624931 RAB11FIP3O75154 756 aa21.18■□□□□ 0.98
PCF11-207ENST00000624931 PTPN12Q05209 780 aaKnown RBP21.18■□□□□ 0.98
PCF11-207ENST00000624931 CUL4AQ13619 759 aa21.18■□□□□ 0.98
PCF11-207ENST00000624931 ZNF652Q9Y2D9 606 aa21.18■□□□□ 0.98
PCF11-207ENST00000624931 DDX60Q8IY21 1712 aaKnown RBP21.17■□□□□ 0.98
PCF11-207ENST00000624931 IRS4O14654 1257 aaPredicted RBP21.17■□□□□ 0.98
PCF11-207ENST00000624931 TBC1D9BQ66K14 1250 aa21.17■□□□□ 0.98
PCF11-207ENST00000624931 RBSNQ9H1K0 784 aa21.17■□□□□ 0.98
PCF11-207ENST00000624931 CCDC39Q9UFE4 941 aa21.17■□□□□ 0.98
PCF11-207ENST00000624931 MYH3P11055 1940 aa21.16■□□□□ 0.98
PCF11-207ENST00000624931 NTSR2O95665 410 aa21.16■□□□□ 0.98
PCF11-207ENST00000624931 NUTM1Q86Y26 1132 aa21.16■□□□□ 0.98
PCF11-207ENST00000624931 KIF1BPQ96EK5 621 aa21.16■□□□□ 0.98
PCF11-207ENST00000624931 ZNF594Q96JF6 807 aaPredicted RBP21.16■□□□□ 0.98
PCF11-207ENST00000624931 SALL3Q9BXA9 1300 aa21.16■□□□□ 0.98
PCF11-207ENST00000624931 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP21.15■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms