RNA–Protein interactions for RNA: ENST00000624354.3

VCL-207, Transcript of vinculin, humanhuman

TSL 2

Gene VCL, Length 3,307 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-207ENST00000624354 NPHP3Q7Z494 1330 aa10.28□□□□□ -0.76
VCL-207ENST00000624354 SASH1O94885 1247 aa10.27□□□□□ -0.76
VCL-207ENST00000624354 DDX58O95786 925 aaKnown RBP10.27□□□□□ -0.76
VCL-207ENST00000624354 RPS6KB1P23443 525 aa10.27□□□□□ -0.76
VCL-207ENST00000624354 IRX5P78411 483 aaPredicted RBP10.27□□□□□ -0.76
VCL-207ENST00000624354 TCEANC2Q96MN5 208 aa10.27□□□□□ -0.76
VCL-207ENST00000624354 BOLA2Q9H3K6 86 aa10.27□□□□□ -0.76
VCL-207ENST00000624354 SNRKQ9NRH2 765 aa10.27□□□□□ -0.76
VCL-207ENST00000624354 GIGYF1O75420 1035 aaPredicted RBP10.27□□□□□ -0.77
VCL-207ENST00000624354 PROSER3Q2NL68 480 aa10.27□□□□□ -0.77
VCL-207ENST00000624354 AMOTQ4VCS5 1084 aa10.27□□□□□ -0.77
VCL-207ENST00000624354 LUZP1Q86V48 1076 aa10.27□□□□□ -0.77
VCL-207ENST00000624354 CKAP2LQ8IYA6 745 aa10.27□□□□□ -0.77
VCL-207ENST00000624354 SUCLG2Q96I99 432 aa10.27□□□□□ -0.77
VCL-207ENST00000624354 HMG20BQ9P0W2 317 aa10.27□□□□□ -0.77
VCL-207ENST00000624354 MED1Q15648 1581 aaPredicted RBP10.27□□□□□ -0.77
VCL-207ENST00000624354 A0A0D9SFI3 127 aa10.27□□□□□ -0.77
VCL-207ENST00000624354 RNMTO43148 476 aaKnown RBP10.27□□□□□ -0.77
VCL-207ENST00000624354 DRC7Q8IY82 874 aa10.27□□□□□ -0.77
VCL-207ENST00000624354 ALDH8A1Q9H2A2 487 aaPredicted RBP10.27□□□□□ -0.77
VCL-207ENST00000624354 BICC1Q9H694 974 aaKnown RBP10.27□□□□□ -0.77
VCL-207ENST00000624354 TFIP11Q9UBB9 837 aaKnown RBP10.27□□□□□ -0.77
VCL-207ENST00000624354 PHF8Q9UPP1 1060 aa10.27□□□□□ -0.77
VCL-207ENST00000624354 ARHGAP23Q9P227 1491 aa10.26□□□□□ -0.77
VCL-207ENST00000624354 PTGS1P23219 599 aa10.26□□□□□ -0.77
VCL-207ENST00000624354 ANO6Q4KMQ2 910 aa10.26□□□□□ -0.77
VCL-207ENST00000624354 LARP1Q6PKG0 1096 aaKnown RBP10.26□□□□□ -0.77
VCL-207ENST00000624354 RGPD8O14715 1765 aaPredicted RBP10.26□□□□□ -0.77
VCL-207ENST00000624354 SLIT1O75093 1534 aa10.26□□□□□ -0.77
VCL-207ENST00000624354 STK3Q13188 491 aa10.26□□□□□ -0.77
VCL-207ENST00000624354 KCNH5Q8NCM2 988 aa10.26□□□□□ -0.77
VCL-207ENST00000624354 LEO1Q8WVC0 666 aaPredicted RBP10.26□□□□□ -0.77
VCL-207ENST00000624354 CBX8Q9HC52 389 aa10.26□□□□□ -0.77
VCL-207ENST00000624354 CTIFO43310 598 aaKnown RBP10.25□□□□□ -0.77
VCL-207ENST00000624354 PSME1Q06323 249 aa10.25□□□□□ -0.77
VCL-207ENST00000624354 TOB2Q14106 344 aaPredicted RBP10.25□□□□□ -0.77
VCL-207ENST00000624354 KRT32Q14532 448 aa10.25□□□□□ -0.77
VCL-207ENST00000624354 BICD2Q8TD16 824 aa10.25□□□□□ -0.77
VCL-207ENST00000624354 LRRC59Q96AG4 307 aaKnown RBP10.25□□□□□ -0.77
VCL-207ENST00000624354 TRIM5Q9C035 493 aa10.25□□□□□ -0.77
VCL-207ENST00000624354 SIL1Q9H173 461 aa10.25□□□□□ -0.77
VCL-207ENST00000624354 COL9A3Q14050 684 aaPredicted RBP10.25□□□□□ -0.77
VCL-207ENST00000624354 CCDC186Q7Z3E2 898 aa10.25□□□□□ -0.77
VCL-207ENST00000624354 DNAJC2Q99543 621 aaKnown RBP10.25□□□□□ -0.77
VCL-207ENST00000624354 CLSTN2Q9H4D0 955 aa10.25□□□□□ -0.77
VCL-207ENST00000624354 TLR7Q9NYK1 1049 aaKnown RBP10.25□□□□□ -0.77
VCL-207ENST00000624354 UTYO14607 1347 aa10.25□□□□□ -0.77
VCL-207ENST00000624354 PIP4K2BP78356 416 aa10.25□□□□□ -0.77
VCL-207ENST00000624354 AIMP1Q12904 312 aaKnown RBP10.25□□□□□ -0.77
VCL-207ENST00000624354 TSGA10IPQ3SY00 556 aa10.25□□□□□ -0.77
VCL-207ENST00000624354 KAZALD1Q96I82 304 aa10.25□□□□□ -0.77
VCL-207ENST00000624354 TIGD1Q96MW7 591 aa10.25□□□□□ -0.77
VCL-207ENST00000624354 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP10.25□□□□□ -0.77
VCL-207ENST00000624354 ADGRL3Q9HAR2 1447 aa10.24□□□□□ -0.77
VCL-207ENST00000624354 MED23Q9ULK4 1368 aa10.24□□□□□ -0.77
VCL-207ENST00000624354 SLFN14P0C7P3 912 aa10.24□□□□□ -0.77
VCL-207ENST00000624354 NPHP4O75161 1426 aaPredicted RBP10.24□□□□□ -0.77
VCL-207ENST00000624354 ZNF165P49910 485 aa10.24□□□□□ -0.77
VCL-207ENST00000624354 RBM43Q6ZSC3 357 aaKnown RBP10.24□□□□□ -0.77
VCL-207ENST00000624354 RIC3Q7Z5B4 369 aa10.24□□□□□ -0.77
VCL-207ENST00000624354 ARHGAP30Q7Z6I6 1101 aaPredicted RBP10.24□□□□□ -0.77
VCL-207ENST00000624354 DDX21Q9NR30 783 aaKnown RBP eCLIP10.24□□□□□ -0.77
VCL-207ENST00000624354 ZC3H6P61129 1189 aaKnown RBP10.23□□□□□ -0.77
VCL-207ENST00000624354 SRCAPQ6ZRS2 3230 aa10.23□□□□□ -0.77
VCL-207ENST00000624354 ZNF589Q86UQ0 364 aaPredicted RBP10.23□□□□□ -0.77
VCL-207ENST00000624354 TDRD7Q8NHU6 1098 aaKnown RBP10.23□□□□□ -0.77
VCL-207ENST00000624354 TAF6LQ9Y6J9 622 aa10.23□□□□□ -0.77
VCL-207ENST00000624354 NCAPD2Q15021 1401 aa10.23□□□□□ -0.77
VCL-207ENST00000624354 PRAMEF22A3QJZ6 481 aa10.23□□□□□ -0.77
VCL-207ENST00000624354 H3BQV1 296 aa10.23□□□□□ -0.77
VCL-207ENST00000624354 NR1I2O75469 434 aa10.23□□□□□ -0.77
VCL-207ENST00000624354 TAF5LO75529 589 aa10.23□□□□□ -0.77
VCL-207ENST00000624354 CAVIN2O95810 425 aa10.23□□□□□ -0.77
VCL-207ENST00000624354 ZNF75DP51815 510 aa10.23□□□□□ -0.77
VCL-207ENST00000624354 NEXNQ0ZGT2 675 aa10.23□□□□□ -0.77
VCL-207ENST00000624354 IFFO2Q5TF58 517 aa10.23□□□□□ -0.77
VCL-207ENST00000624354 CTNNA3Q9UI47 895 aa10.23□□□□□ -0.77
VCL-207ENST00000624354 KDM3BQ7LBC6 1761 aa10.23□□□□□ -0.77
VCL-207ENST00000624354 PLA2G4DQ86XP0 818 aa10.23□□□□□ -0.77
VCL-207ENST00000624354 GTF3C6Q969F1 213 aa10.23□□□□□ -0.77
VCL-207ENST00000624354 NEK1Q96PY6 1258 aa10.23□□□□□ -0.77
VCL-207ENST00000624354 CFAP45Q9UL16 551 aa10.23□□□□□ -0.77
VCL-207ENST00000624354 HEG1Q9ULI3 1381 aa10.23□□□□□ -0.77
VCL-207ENST00000624354 USP54Q70EL1 1684 aa10.22□□□□□ -0.77
VCL-207ENST00000624354 MARF1Q9Y4F3 1742 aaKnown RBP10.22□□□□□ -0.77
VCL-207ENST00000624354 HSP90B1P14625 803 aaKnown RBP10.22□□□□□ -0.77
VCL-207ENST00000624354 NCBP1Q09161 790 aaKnown RBP10.22□□□□□ -0.77
VCL-207ENST00000624354 DNAJC25Q9H1X3 360 aa10.22□□□□□ -0.77
VCL-207ENST00000624354 ZSCAN16Q9H4T2 348 aaPredicted RBP10.22□□□□□ -0.77
VCL-207ENST00000624354 JAK2O60674 1132 aa10.22□□□□□ -0.77
VCL-207ENST00000624354 SLC20A2Q08357 652 aa10.22□□□□□ -0.77
VCL-207ENST00000624354 LRMPQ12912 555 aa10.22□□□□□ -0.77
VCL-207ENST00000624354 USPL1Q5W0Q7 1092 aa10.22□□□□□ -0.77
VCL-207ENST00000624354 PAXIP1Q6ZW49 1069 aaPredicted RBP10.22□□□□□ -0.77
VCL-207ENST00000624354 KLHDC4Q8TBB5 520 aa10.22□□□□□ -0.77
VCL-207ENST00000624354 BRF1Q92994 677 aa10.22□□□□□ -0.77
VCL-207ENST00000624354 PGBD1Q96JS3 809 aa10.22□□□□□ -0.77
VCL-207ENST00000624354 DDX41Q9UJV9 622 aaKnown RBP10.22□□□□□ -0.77
VCL-207ENST00000624354 SYCP1Q15431 976 aa10.22□□□□□ -0.77
VCL-207ENST00000624354 ZSCAN25Q6NSZ9 544 aa10.22□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms