RNA–Protein interactions for RNA: ENST00000623461.3

VCL-206, Transcript of vinculin, humanhuman

TSL 1 (best)

Gene VCL, Length 7,995 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-206ENST00000623461 PIK3C2GO75747 1445 aa10.17□□□□□ -0.78
VCL-206ENST00000623461 ZNF213O14771 459 aa10.17□□□□□ -0.78
VCL-206ENST00000623461 CLNS1AP54105 237 aaKnown RBP10.17□□□□□ -0.78
VCL-206ENST00000623461 CEP83Q9Y592 693 aa10.17□□□□□ -0.78
VCL-206ENST00000623461 ATP6V1AP38606 617 aa10.17□□□□□ -0.78
VCL-206ENST00000623461 CPLX4Q7Z7G2 160 aa10.17□□□□□ -0.78
VCL-206ENST00000623461 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP10.17□□□□□ -0.78
VCL-206ENST00000623461 EFCC1Q9HA90 598 aa10.17□□□□□ -0.78
VCL-206ENST00000623461 PUF60Q9UHX1 559 aaKnown RBP10.17□□□□□ -0.78
VCL-206ENST00000623461 USP16Q9Y5T5 823 aa10.17□□□□□ -0.78
VCL-206ENST00000623461 SLC12A7Q9Y666 1083 aa10.17□□□□□ -0.78
VCL-206ENST00000623461 DDX54Q8TDD1 881 aaKnown RBP10.17□□□□□ -0.78
VCL-206ENST00000623461 DCTPP1Q9H773 170 aa10.17□□□□□ -0.78
VCL-206ENST00000623461 ANKRD36BQ8N2N9 1353 aa10.17□□□□□ -0.78
VCL-206ENST00000623461 LACTBP83111 547 aaPredicted RBP10.17□□□□□ -0.78
VCL-206ENST00000623461 GOLGA5Q8TBA6 731 aa10.17□□□□□ -0.78
VCL-206ENST00000623461 BAG1Q99933 345 aaPredicted RBP10.17□□□□□ -0.78
VCL-206ENST00000623461 TMCO5BA8MYB1 307 aa10.16□□□□□ -0.78
VCL-206ENST00000623461 UBE4AQ14139 1066 aa10.16□□□□□ -0.78
VCL-206ENST00000623461 TSGA10Q9BZW7 698 aa10.16□□□□□ -0.78
VCL-206ENST00000623461 ZBTB40Q9NUA8 1239 aa10.16□□□□□ -0.78
VCL-206ENST00000623461 MTMR7Q9Y216 660 aa10.16□□□□□ -0.78
VCL-206ENST00000623461 ELP1O95163 1332 aa10.16□□□□□ -0.78
VCL-206ENST00000623461 RHOXF2BP0C7M4 288 aa10.16□□□□□ -0.78
VCL-206ENST00000623461 GPR161Q8N6U8 529 aaKnown RBP10.16□□□□□ -0.78
VCL-206ENST00000623461 RHOXF2Q9BQY4 288 aa10.16□□□□□ -0.78
VCL-206ENST00000623461 GOLGA8AA7E2F4 631 aa10.16□□□□□ -0.78
VCL-206ENST00000623461 SPATS2Q86XZ4 545 aaKnown RBP10.16□□□□□ -0.78
VCL-206ENST00000623461 NECAB1Q8N987 351 aa10.16□□□□□ -0.78
VCL-206ENST00000623461 RAB34Q9BZG1 259 aa10.16□□□□□ -0.78
VCL-206ENST00000623461 RASAL2Q9UJF2 1139 aa10.16□□□□□ -0.78
VCL-206ENST00000623461 ATP8B1O43520 1251 aa10.16□□□□□ -0.78
VCL-206ENST00000623461 PHACTR2O75167 634 aa10.16□□□□□ -0.78
VCL-206ENST00000623461 CCDC96Q2M329 555 aa10.16□□□□□ -0.78
VCL-206ENST00000623461 ISM2Q6H9L7 571 aa10.16□□□□□ -0.78
VCL-206ENST00000623461 AIDAQ96BJ3 306 aa10.16□□□□□ -0.78
VCL-206ENST00000623461 UTP14AQ9BVJ6 771 aaKnown RBP10.16□□□□□ -0.78
VCL-206ENST00000623461 POLR3AO14802 1390 aaPredicted RBP10.16□□□□□ -0.78
VCL-206ENST00000623461 BRD3Q15059 726 aa10.16□□□□□ -0.78
VCL-206ENST00000623461 IBTKQ9P2D0 1353 aaPredicted RBP10.16□□□□□ -0.78
VCL-206ENST00000623461 ZEB2O60315 1214 aa10.16□□□□□ -0.78
VCL-206ENST00000623461 IARSP41252 1262 aaKnown RBP10.16□□□□□ -0.78
VCL-206ENST00000623461 CHMP4BP1P59074 171 aa10.16□□□□□ -0.78
VCL-206ENST00000623461 KIF5AQ12840 1032 aa10.16□□□□□ -0.78
VCL-206ENST00000623461 DAAM2Q86T65 1068 aa10.16□□□□□ -0.78
VCL-206ENST00000623461 IFT74Q96LB3 600 aa10.16□□□□□ -0.78
VCL-206ENST00000623461 THUMPD2Q9BTF0 503 aaKnown RBP10.16□□□□□ -0.78
VCL-206ENST00000623461 SAMD15Q9P1V8 674 aa10.16□□□□□ -0.78
VCL-206ENST00000623461 POLR3DP05423 398 aaPredicted RBP10.16□□□□□ -0.78
VCL-206ENST00000623461 SETSIPP0DME0 302 aa10.16□□□□□ -0.78
VCL-206ENST00000623461 CNGA4Q8IV77 575 aa10.16□□□□□ -0.78
VCL-206ENST00000623461 LMNTD2Q8IXW0 634 aa10.16□□□□□ -0.78
VCL-206ENST00000623461 CLSTN2Q9H4D0 955 aa10.16□□□□□ -0.78
VCL-206ENST00000623461 SWAP70Q9UH65 585 aa10.16□□□□□ -0.78
VCL-206ENST00000623461 BTBD11A6QL63 1104 aa10.15□□□□□ -0.78
VCL-206ENST00000623461 AKR1B10O60218 316 aa10.15□□□□□ -0.78
VCL-206ENST00000623461 TRIM21P19474 475 aaKnown RBP10.15□□□□□ -0.78
VCL-206ENST00000623461 CFAP58Q5T655 872 aa10.15□□□□□ -0.78
VCL-206ENST00000623461 LARP1Q6PKG0 1096 aaKnown RBP10.15□□□□□ -0.78
VCL-206ENST00000623461 LMOD1P29536 600 aaPredicted RBP10.15□□□□□ -0.78
VCL-206ENST00000623461 KIAA0753Q2KHM9 967 aa10.15□□□□□ -0.78
VCL-206ENST00000623461 KLHL34Q8N239 644 aa10.15□□□□□ -0.78
VCL-206ENST00000623461 MRPL50Q8N5N7 158 aaKnown RBP10.15□□□□□ -0.78
VCL-206ENST00000623461 PRG4Q92954 1404 aaPredicted RBP10.15□□□□□ -0.78
VCL-206ENST00000623461 NDUFAB1O14561 156 aa10.15□□□□□ -0.78
VCL-206ENST00000623461 SSBP05455 408 aaKnown RBP eCLIP10.15□□□□□ -0.78
VCL-206ENST00000623461 AK2P54819 239 aa10.15□□□□□ -0.78
VCL-206ENST00000623461 PLEKHM2Q8IWE5 1019 aa10.15□□□□□ -0.78
VCL-206ENST00000623461 BANK1Q8NDB2 785 aa10.15□□□□□ -0.78
VCL-206ENST00000623461 CARD6Q9BX69 1037 aa10.15□□□□□ -0.78
VCL-206ENST00000623461 A0A087WZG4 1122 aa10.15□□□□□ -0.79
VCL-206ENST00000623461 IFIT1P09914 478 aaKnown RBP10.15□□□□□ -0.79
VCL-206ENST00000623461 DESP17661 470 aa10.15□□□□□ -0.79
VCL-206ENST00000623461 LRRC27Q9C0I9 530 aa10.15□□□□□ -0.79
VCL-206ENST00000623461 RNF216Q9NWF9 866 aaPredicted RBP10.15□□□□□ -0.79
VCL-206ENST00000623461 TTF2Q9UNY4 1162 aaKnown RBP10.15□□□□□ -0.79
VCL-206ENST00000623461 NUP160Q12769 1436 aa10.15□□□□□ -0.79
VCL-206ENST00000623461 GOLGA6CA6NDK9 693 aa10.15□□□□□ -0.79
VCL-206ENST00000623461 GOLGA6DP0CG33 693 aa10.15□□□□□ -0.79
VCL-206ENST00000623461 DNA2P51530 1060 aa10.15□□□□□ -0.79
VCL-206ENST00000623461 KARSQ15046 597 aaKnown RBP10.15□□□□□ -0.79
VCL-206ENST00000623461 NAPGQ99747 312 aaPredicted RBP10.15□□□□□ -0.79
VCL-206ENST00000623461 GOLGA6AQ9NYA3 693 aa10.15□□□□□ -0.79
VCL-206ENST00000623461 MYO1BO43795 1136 aa10.14□□□□□ -0.79
VCL-206ENST00000623461 CBX8Q9HC52 389 aa10.14□□□□□ -0.79
VCL-206ENST00000623461 ATP11AP98196 1134 aa10.14□□□□□ -0.79
VCL-206ENST00000623461 AKR1B15C9JRZ8 316 aaPredicted RBP10.14□□□□□ -0.79
VCL-206ENST00000623461 SPTLC2O15270 562 aa10.14□□□□□ -0.79
VCL-206ENST00000623461 MYL5Q02045 173 aa10.14□□□□□ -0.79
VCL-206ENST00000623461 RNF41Q9H4P4 317 aaPredicted RBP10.14□□□□□ -0.79
VCL-206ENST00000623461 FBXO3Q9UK99 471 aa10.14□□□□□ -0.79
VCL-206ENST00000623461 RBM8AQ9Y5S9 174 aaKnown RBP10.14□□□□□ -0.79
VCL-206ENST00000623461 MAGI1Q96QZ7 1491 aaPredicted RBP10.14□□□□□ -0.79
VCL-206ENST00000623461 PRPHP41219 470 aa10.14□□□□□ -0.79
VCL-206ENST00000623461 NOP2P46087 812 aaKnown RBP10.14□□□□□ -0.79
VCL-206ENST00000623461 TAF7Q15545 349 aaPredicted RBP10.14□□□□□ -0.79
VCL-206ENST00000623461 HOOK3Q86VS8 718 aa10.14□□□□□ -0.79
VCL-206ENST00000623461 ANKRD18BA2A2Z9 1011 aa10.14□□□□□ -0.79
VCL-206ENST00000623461 FLIIQ13045 1269 aa10.14□□□□□ -0.79
VCL-206ENST00000623461 TRIM14Q14142 442 aa10.14□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms