RNA–Protein interactions for RNA: ENST00000622309.4

VPS11-209, Transcript of VPS11, CORVET/HOPS core subunit, humanhuman

TSL 5

Gene VPS11, Length 3,352 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS11-209ENST00000622309 TNMDQ9H2S6 317 aa9.21□□□□□ -0.93
VPS11-209ENST00000622309 CABP2Q9NPB3 220 aa9.21□□□□□ -0.93
VPS11-209ENST00000622309 KIF1BO60333 1816 aa9.21□□□□□ -0.93
VPS11-209ENST00000622309 SCP2P22307 547 aa9.21□□□□□ -0.94
VPS11-209ENST00000622309 ZNF165P49910 485 aa9.21□□□□□ -0.94
VPS11-209ENST00000622309 CC2D1AQ6P1N0 951 aaPredicted RBP9.21□□□□□ -0.94
VPS11-209ENST00000622309 CKAP2LQ8IYA6 745 aa9.21□□□□□ -0.94
VPS11-209ENST00000622309 NME8Q8N427 588 aa9.21□□□□□ -0.94
VPS11-209ENST00000622309 PROCA1Q8NCQ7 364 aaPredicted RBP9.21□□□□□ -0.94
VPS11-209ENST00000622309 LAMC1P11047 1609 aa9.21□□□□□ -0.94
VPS11-209ENST00000622309 NRDCO43847 1150 aa9.21□□□□□ -0.94
VPS11-209ENST00000622309 NEBLO76041 1014 aa9.21□□□□□ -0.94
VPS11-209ENST00000622309 ERLIN2O94905 339 aa9.21□□□□□ -0.94
VPS11-209ENST00000622309 MAP9Q49MG5 647 aa9.21□□□□□ -0.94
VPS11-209ENST00000622309 TSHZ1Q6ZSZ6 1077 aa9.21□□□□□ -0.94
VPS11-209ENST00000622309 SRRTQ9BXP5 876 aaKnown RBP9.21□□□□□ -0.94
VPS11-209ENST00000622309 BIN2Q9UBW5 565 aaPredicted RBP9.21□□□□□ -0.94
VPS11-209ENST00000622309 GOLGA6L4A6NEF3 574 aa9.2□□□□□ -0.94
VPS11-209ENST00000622309 TUBB4AP04350 444 aa9.2□□□□□ -0.94
VPS11-209ENST00000622309 NBPF9Q3BBW0 867 aa9.2□□□□□ -0.94
VPS11-209ENST00000622309 CWC27Q6UX04 472 aaKnown RBP9.2□□□□□ -0.94
VPS11-209ENST00000622309 ERC1Q8IUD2 1116 aa9.2□□□□□ -0.94
VPS11-209ENST00000622309 PRPF38AQ8NAV1 312 aaKnown RBP9.2□□□□□ -0.94
VPS11-209ENST00000622309 TDRD7Q8NHU6 1098 aaKnown RBP9.2□□□□□ -0.94
VPS11-209ENST00000622309 CFAP53Q96M91 514 aa9.2□□□□□ -0.94
VPS11-209ENST00000622309 TERF2IPQ9NYB0 399 aa9.2□□□□□ -0.94
VPS11-209ENST00000622309 RPS6KL1Q9Y6S9 549 aa9.2□□□□□ -0.94
VPS11-209ENST00000622309 RPAP1Q9BWH6 1393 aaPredicted RBP9.2□□□□□ -0.94
VPS11-209ENST00000622309 IQGAP1P46940 1657 aa9.2□□□□□ -0.94
VPS11-209ENST00000622309 LRRC7Q96NW7 1537 aa9.2□□□□□ -0.94
VPS11-209ENST00000622309 STX6O43752 255 aa9.2□□□□□ -0.94
VPS11-209ENST00000622309 EIF5P55010 431 aaKnown RBP9.2□□□□□ -0.94
VPS11-209ENST00000622309 CCDC93Q567U6 631 aa9.2□□□□□ -0.94
VPS11-209ENST00000622309 SYTL4Q96C24 671 aaPredicted RBP9.2□□□□□ -0.94
VPS11-209ENST00000622309 ZBTB7BO15156 539 aaPredicted RBP9.2□□□□□ -0.94
VPS11-209ENST00000622309 RPS6KA5O75582 802 aa9.2□□□□□ -0.94
VPS11-209ENST00000622309 URI1O94763 535 aaPredicted RBP9.2□□□□□ -0.94
VPS11-209ENST00000622309 U2AF1L5P0DN76 240 aaPredicted RBP9.2□□□□□ -0.94
VPS11-209ENST00000622309 EVCP57679 992 aa9.2□□□□□ -0.94
VPS11-209ENST00000622309 U2AF1Q01081 240 aaKnown RBP eCLIP9.2□□□□□ -0.94
VPS11-209ENST00000622309 TBC1D22AQ8WUA7 517 aa9.2□□□□□ -0.94
VPS11-209ENST00000622309 C14orf93Q9H972 538 aaKnown RBP9.2□□□□□ -0.94
VPS11-209ENST00000622309 ERVK-7P63135 1459 aa9.19□□□□□ -0.94
VPS11-209ENST00000622309 EFCAB8A8MWE9 144 aa9.19□□□□□ -0.94
VPS11-209ENST00000622309 F13A1P00488 732 aa9.19□□□□□ -0.94
VPS11-209ENST00000622309 PDE6BP35913 854 aa9.19□□□□□ -0.94
VPS11-209ENST00000622309 TACO1Q9BSH4 297 aaKnown RBP9.19□□□□□ -0.94
VPS11-209ENST00000622309 MINK1Q8N4C8 1332 aaPredicted RBP9.19□□□□□ -0.94
VPS11-209ENST00000622309 NBPF10Q6P3W6 841 aaKnown RBP9.19□□□□□ -0.94
VPS11-209ENST00000622309 C16orf71Q8IYS4 520 aaPredicted RBP9.19□□□□□ -0.94
VPS11-209ENST00000622309 RDXP35241 583 aaKnown RBP9.18□□□□□ -0.94
VPS11-209ENST00000622309 DNM1Q05193 864 aaKnown RBP9.18□□□□□ -0.94
VPS11-209ENST00000622309 CARD6Q9BX69 1037 aa9.18□□□□□ -0.94
VPS11-209ENST00000622309 UPF3BQ9BZI7 483 aaKnown RBP9.18□□□□□ -0.94
VPS11-209ENST00000622309 RGS17Q9UGC6 210 aaPredicted RBP9.18□□□□□ -0.94
VPS11-209ENST00000622309 DNAI1Q9UI46 699 aa9.18□□□□□ -0.94
VPS11-209ENST00000622309 EIF3JO75822 258 aaKnown RBP9.18□□□□□ -0.94
VPS11-209ENST00000622309 HNRNPH1P31943 449 aaKnown RBP9.18□□□□□ -0.94
VPS11-209ENST00000622309 CCZ1BP86790 482 aa9.18□□□□□ -0.94
VPS11-209ENST00000622309 CCZ1P86791 482 aaPredicted RBP9.18□□□□□ -0.94
VPS11-209ENST00000622309 SKIDA1Q1XH10 827 aa9.18□□□□□ -0.94
VPS11-209ENST00000622309 CCDC30Q5VVM6 783 aa9.18□□□□□ -0.94
VPS11-209ENST00000622309 GPR161Q8N6U8 529 aaKnown RBP9.18□□□□□ -0.94
VPS11-209ENST00000622309 DNAJC25Q9H1X3 360 aa9.18□□□□□ -0.94
VPS11-209ENST00000622309 GNL3LQ9NVN8 582 aaKnown RBP9.18□□□□□ -0.94
VPS11-209ENST00000622309 SMC3Q9UQE7 1217 aa9.18□□□□□ -0.94
VPS11-209ENST00000622309 USP16Q9Y5T5 823 aa9.18□□□□□ -0.94
VPS11-209ENST00000622309 ABCC3O15438 1527 aa9.18□□□□□ -0.94
VPS11-209ENST00000622309 H3BQF6 201 aa9.18□□□□□ -0.94
VPS11-209ENST00000622309 SRGAP3O43295 1099 aa9.18□□□□□ -0.94
VPS11-209ENST00000622309 RBM5P52756 815 aaKnown RBP eCLIP9.18□□□□□ -0.94
VPS11-209ENST00000622309 GSDMDP57764 484 aa9.18□□□□□ -0.94
VPS11-209ENST00000622309 CCT2P78371 535 aaKnown RBP9.18□□□□□ -0.94
VPS11-209ENST00000622309 ZKSCAN8Q15776 578 aaPredicted RBP9.18□□□□□ -0.94
VPS11-209ENST00000622309 NBPF6Q5VWK0 638 aa9.18□□□□□ -0.94
VPS11-209ENST00000622309 NBPF5PQ86XG9 351 aaPredicted RBP9.18□□□□□ -0.94
VPS11-209ENST00000622309 FMNL3Q8IVF7 1028 aa9.18□□□□□ -0.94
VPS11-209ENST00000622309 BORCS6Q96GS4 357 aa9.18□□□□□ -0.94
VPS11-209ENST00000622309 NBPF4Q96M43 638 aa9.18□□□□□ -0.94
VPS11-209ENST00000622309 SLC24A3Q9HC58 644 aa9.18□□□□□ -0.94
VPS11-209ENST00000622309 KLHL33A6NCF5 533 aa9.17□□□□□ -0.94
VPS11-209ENST00000622309 GOLGA6CA6NDK9 693 aa9.17□□□□□ -0.94
VPS11-209ENST00000622309 GOLGA6BA6NDN3 693 aa9.17□□□□□ -0.94
VPS11-209ENST00000622309 BECN2A8MW95 431 aa9.17□□□□□ -0.94
VPS11-209ENST00000622309 TADA3O75528 432 aa9.17□□□□□ -0.94
VPS11-209ENST00000622309 GOLGA6DP0CG33 693 aa9.17□□□□□ -0.94
VPS11-209ENST00000622309 SYT1P21579 422 aa9.17□□□□□ -0.94
VPS11-209ENST00000622309 HSP90B2PQ58FF3 399 aa9.17□□□□□ -0.94
VPS11-209ENST00000622309 TTC19Q6DKK2 380 aaPredicted RBP9.17□□□□□ -0.94
VPS11-209ENST00000622309 SIRT2Q8IXJ6 389 aa9.17□□□□□ -0.94
VPS11-209ENST00000622309 OTUD6BQ8N6M0 293 aa9.17□□□□□ -0.94
VPS11-209ENST00000622309 MIEF2Q96C03 454 aa9.17□□□□□ -0.94
VPS11-209ENST00000622309 DDX11Q96FC9 970 aa9.17□□□□□ -0.94
VPS11-209ENST00000622309 MRFAP1L1Q96HT8 127 aa9.17□□□□□ -0.94
VPS11-209ENST00000622309 PPP1R13BQ96KQ4 1090 aa9.17□□□□□ -0.94
VPS11-209ENST00000622309 JPH2Q9BR39 696 aaPredicted RBP9.17□□□□□ -0.94
VPS11-209ENST00000622309 GOLGA6AQ9NYA3 693 aa9.17□□□□□ -0.94
VPS11-209ENST00000622309 ABCC11Q96J66 1382 aa9.17□□□□□ -0.94
VPS11-209ENST00000622309 NSD3Q9BZ95 1437 aa9.17□□□□□ -0.94
VPS11-209ENST00000622309 TESPA1A2RU30 521 aaPredicted RBP9.17□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms