RNA–Protein interactions for RNA: ENST00000622226.1

PDLIM2-220, Transcript of PDZ and LIM domain 2, humanhuman

Gene PDLIM2, Length 6,559 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM2-220ENST00000622226 A0A1B0GUA9 196 aa17.42■□□□□ 0.38
PDLIM2-220ENST00000622226 TTC36A6NLP5 189 aa17.42■□□□□ 0.38
PDLIM2-220ENST00000622226 GSTA5Q7RTV2 222 aa17.42■□□□□ 0.38
PDLIM2-220ENST00000622226 CALML4Q96GE6 196 aa17.42■□□□□ 0.38
PDLIM2-220ENST00000622226 VAT1LQ9HCJ6 419 aa17.42■□□□□ 0.38
PDLIM2-220ENST00000622226 RRAGBQ5VZM2 374 aa17.42■□□□□ 0.38
PDLIM2-220ENST00000622226 CYLC1P35663 651 aaPredicted RBP17.42■□□□□ 0.38
PDLIM2-220ENST00000622226 IFI16Q16666 785 aaKnown RBP17.42■□□□□ 0.38
PDLIM2-220ENST00000622226 NECAB1Q8N987 351 aa17.42■□□□□ 0.38
PDLIM2-220ENST00000622226 TMEM87AQ8NBN3 555 aa17.42■□□□□ 0.38
PDLIM2-220ENST00000622226 SELENOOQ9BVL4 669 aa17.42■□□□□ 0.38
PDLIM2-220ENST00000622226 USP16Q9Y5T5 823 aa17.42■□□□□ 0.38
PDLIM2-220ENST00000622226 LACTBP83111 547 aaPredicted RBP17.41■□□□□ 0.38
PDLIM2-220ENST00000622226 TBC1D9Q6ZT07 1266 aa17.41■□□□□ 0.38
PDLIM2-220ENST00000622226 SAMD15Q9P1V8 674 aa17.41■□□□□ 0.38
PDLIM2-220ENST00000622226 DIXDC1Q155Q3 683 aa17.41■□□□□ 0.38
PDLIM2-220ENST00000622226 ANKIB1Q9P2G1 1089 aa17.41■□□□□ 0.38
PDLIM2-220ENST00000622226 KIF20AO95235 890 aa17.41■□□□□ 0.38
PDLIM2-220ENST00000622226 HAND2P61296 217 aa17.41■□□□□ 0.38
PDLIM2-220ENST00000622226 FAM76AQ8TAV0 307 aa17.41■□□□□ 0.38
PDLIM2-220ENST00000622226 SCAPERQ9BY12 1400 aa17.41■□□□□ 0.38
PDLIM2-220ENST00000622226 RASAL2Q9UJF2 1139 aa17.41■□□□□ 0.38
PDLIM2-220ENST00000622226 GUCA1BQ9UMX6 200 aa17.41■□□□□ 0.38
PDLIM2-220ENST00000622226 SLFN5Q08AF3 891 aa17.4■□□□□ 0.38
PDLIM2-220ENST00000622226 PPFIBP2Q8ND30 876 aa17.4■□□□□ 0.38
PDLIM2-220ENST00000622226 TCP11L1Q9NUJ3 509 aa17.4■□□□□ 0.38
PDLIM2-220ENST00000622226 OGFRQ9NZT2 677 aa17.4■□□□□ 0.38
PDLIM2-220ENST00000622226 HPDP32754 393 aaPredicted RBP17.4■□□□□ 0.38
PDLIM2-220ENST00000622226 USP48Q86UV5 1035 aa17.4■□□□□ 0.38
PDLIM2-220ENST00000622226 SYKP43405 635 aa17.4■□□□□ 0.38
PDLIM2-220ENST00000622226 PRIM1P49642 420 aaKnown RBP17.4■□□□□ 0.38
PDLIM2-220ENST00000622226 MICU3Q86XE3 530 aa17.4■□□□□ 0.38
PDLIM2-220ENST00000622226 NDC80O14777 642 aa17.4■□□□□ 0.38
PDLIM2-220ENST00000622226 UBA7P41226 1012 aa17.4■□□□□ 0.38
PDLIM2-220ENST00000622226 ZNF569Q5MCW4 686 aa17.4■□□□□ 0.38
PDLIM2-220ENST00000622226 STMN2Q93045 179 aa17.4■□□□□ 0.38
PDLIM2-220ENST00000622226 SPAG5Q96R06 1193 aa17.4■□□□□ 0.38
PDLIM2-220ENST00000622226 BUB1BO60566 1050 aaPredicted RBP17.4■□□□□ 0.38
PDLIM2-220ENST00000622226 GBP7Q8N8V2 638 aaPredicted RBP17.4■□□□□ 0.38
PDLIM2-220ENST00000622226 CABP1Q9NZU7 370 aa17.4■□□□□ 0.38
PDLIM2-220ENST00000622226 DZIP1Q86YF9 867 aaKnown RBP17.39■□□□□ 0.38
PDLIM2-220ENST00000622226 PPP1R9BQ96SB3 815 aa17.39■□□□□ 0.38
PDLIM2-220ENST00000622226 CCDC77Q9BR77 488 aa17.39■□□□□ 0.38
PDLIM2-220ENST00000622226 CRACR2BQ8N4Y2 399 aaPredicted RBP17.39■□□□□ 0.37
PDLIM2-220ENST00000622226 DNAI2Q9GZS0 605 aa17.39■□□□□ 0.37
PDLIM2-220ENST00000622226 ORC3Q9UBD5 711 aaPredicted RBP17.39■□□□□ 0.37
PDLIM2-220ENST00000622226 SSX2IPQ9Y2D8 614 aa17.39■□□□□ 0.37
PDLIM2-220ENST00000622226 FGD5Q6ZNL6 1462 aa17.39■□□□□ 0.37
PDLIM2-220ENST00000622226 F6X3S4 739 aa17.39■□□□□ 0.37
PDLIM2-220ENST00000622226 VIMP08670 466 aaKnown RBP17.39■□□□□ 0.37
PDLIM2-220ENST00000622226 LMOD1P29536 600 aaPredicted RBP17.39■□□□□ 0.37
PDLIM2-220ENST00000622226 TTC14Q96N46 770 aa17.39■□□□□ 0.37
PDLIM2-220ENST00000622226 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP17.39■□□□□ 0.37
PDLIM2-220ENST00000622226 MAP3K9P80192 1104 aa17.39■□□□□ 0.37
PDLIM2-220ENST00000622226 AMPD3Q01432 767 aa17.39■□□□□ 0.37
PDLIM2-220ENST00000622226 ZNF354CQ86Y25 554 aa17.39■□□□□ 0.37
PDLIM2-220ENST00000622226 MRPS9P82933 396 aaKnown RBP17.38■□□□□ 0.37
PDLIM2-220ENST00000622226 TACC1O75410 805 aa17.38■□□□□ 0.37
PDLIM2-220ENST00000622226 HSPA2P54652 639 aa17.38■□□□□ 0.37
PDLIM2-220ENST00000622226 SETDB1Q15047 1291 aa17.38■□□□□ 0.37
PDLIM2-220ENST00000622226 UBLCP1Q8WVY7 318 aaPredicted RBP17.38■□□□□ 0.37
PDLIM2-220ENST00000622226 SLC26A6Q9BXS9 759 aa17.38■□□□□ 0.37
PDLIM2-220ENST00000622226 EXOC1Q9NV70 894 aa17.38■□□□□ 0.37
PDLIM2-220ENST00000622226 IGHMBP2P38935 993 aaKnown RBP17.38■□□□□ 0.37
PDLIM2-220ENST00000622226 IQCA1Q86XH1 822 aa17.38■□□□□ 0.37
PDLIM2-220ENST00000622226 FAM184BQ9ULE4 1060 aa17.38■□□□□ 0.37
PDLIM2-220ENST00000622226 HMGB1P09429 215 aaKnown RBP17.38■□□□□ 0.37
PDLIM2-220ENST00000622226 ATAD2BQ9ULI0 1458 aa17.38■□□□□ 0.37
PDLIM2-220ENST00000622226 STMN4Q9H169 189 aaPredicted RBP17.37■□□□□ 0.37
PDLIM2-220ENST00000622226 DNAJC5BQ9UF47 199 aa17.37■□□□□ 0.37
PDLIM2-220ENST00000622226 IARSP41252 1262 aaKnown RBP17.37■□□□□ 0.37
PDLIM2-220ENST00000622226 SYNCQ9H7C4 482 aa17.37■□□□□ 0.37
PDLIM2-220ENST00000622226 FOXO3O43524 673 aa17.37■□□□□ 0.37
PDLIM2-220ENST00000622226 ATP11AP98196 1134 aa17.37■□□□□ 0.37
PDLIM2-220ENST00000622226 CEP85LQ5SZL2 805 aa17.37■□□□□ 0.37
PDLIM2-220ENST00000622226 SMAP1Q8IYB5 467 aaPredicted RBP17.37■□□□□ 0.37
PDLIM2-220ENST00000622226 ZNF444Q8N0Y2 327 aaPredicted RBP17.37■□□□□ 0.37
PDLIM2-220ENST00000622226 PSMD6Q15008 389 aa17.37■□□□□ 0.37
PDLIM2-220ENST00000622226 INTS8Q75QN2 995 aaKnown RBP17.37■□□□□ 0.37
PDLIM2-220ENST00000622226 PLCB3Q01970 1234 aa17.37■□□□□ 0.37
PDLIM2-220ENST00000622226 SMC1BQ8NDV3 1235 aa17.37■□□□□ 0.37
PDLIM2-220ENST00000622226 DACT1Q9NYF0 836 aa17.36■□□□□ 0.37
PDLIM2-220ENST00000622226 SSH1Q8WYL5 1049 aa17.36■□□□□ 0.37
PDLIM2-220ENST00000622226 TBC1D5Q92609 795 aa17.36■□□□□ 0.37
PDLIM2-220ENST00000622226 FERMT1Q9BQL6 677 aa17.36■□□□□ 0.37
PDLIM2-220ENST00000622226 A0A087WZG4 1122 aa17.36■□□□□ 0.37
PDLIM2-220ENST00000622226 MCM10Q7L590 875 aa17.36■□□□□ 0.37
PDLIM2-220ENST00000622226 ZSCAN22P10073 491 aaPredicted RBP17.36■□□□□ 0.37
PDLIM2-220ENST00000622226 FAM200AQ8TCP9 573 aa17.36■□□□□ 0.37
PDLIM2-220ENST00000622226 LRRC2Q9BYS8 371 aa17.36■□□□□ 0.37
PDLIM2-220ENST00000622226 RUSC2Q8N2Y8 1516 aa17.36■□□□□ 0.37
PDLIM2-220ENST00000622226 MARCKSP29966 332 aaPredicted RBP17.36■□□□□ 0.37
PDLIM2-220ENST00000622226 CATIPQ7Z7H3 387 aa17.36■□□□□ 0.37
PDLIM2-220ENST00000622226 CCDC50Q8IVM0 306 aa17.36■□□□□ 0.37
PDLIM2-220ENST00000622226 EEF2P13639 858 aaKnown RBP17.35■□□□□ 0.37
PDLIM2-220ENST00000622226 CUL5Q93034 780 aa17.35■□□□□ 0.37
PDLIM2-220ENST00000622226 LUC7L2Q9Y383 392 aaKnown RBP17.35■□□□□ 0.37
PDLIM2-220ENST00000622226 SAMM50Q9Y512 469 aa17.35■□□□□ 0.37
PDLIM2-220ENST00000622226 MRVI1Q9Y6F6 885 aa17.35■□□□□ 0.37
PDLIM2-220ENST00000622226 TMEM67Q5HYA8 995 aa17.35■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms