RNA–Protein interactions for RNA: ENST00000621245.4

CPNE3-210, Transcript of copine 3, humanhuman

TSL 5

Gene CPNE3, Length 581 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-210ENST00000621245 COL13A1Q5TAT6 717 aaPredicted RBP14.93□□□□□ -0.02
CPNE3-210ENST00000621245 LDHDQ86WU2 507 aa14.93□□□□□ -0.02
CPNE3-210ENST00000621245 NLRP3Q96P20 1036 aa14.93□□□□□ -0.02
CPNE3-210ENST00000621245 MKRN1Q9UHC7 482 aaKnown RBP14.93□□□□□ -0.02
CPNE3-210ENST00000621245 HACL1Q9UJ83 578 aa14.93□□□□□ -0.02
CPNE3-210ENST00000621245 GJA3Q9Y6H8 435 aa14.93□□□□□ -0.02
CPNE3-210ENST00000621245 IQCA1LA6NCM1 817 aa14.92□□□□□ -0.02
CPNE3-210ENST00000621245 ATP5J2-PTCD1G3V325 749 aa14.92□□□□□ -0.02
CPNE3-210ENST00000621245 ITGBL1O95965 494 aaPredicted RBP14.92□□□□□ -0.02
CPNE3-210ENST00000621245 SCNN1DP51172 638 aa14.92□□□□□ -0.02
CPNE3-210ENST00000621245 FMR1Q06787 632 aaKnown RBP eCLIP14.92□□□□□ -0.02
CPNE3-210ENST00000621245 DUSP27Q5VZP5 1158 aa14.92□□□□□ -0.02
CPNE3-210ENST00000621245 LARGE2Q8N3Y3 721 aa14.92□□□□□ -0.02
CPNE3-210ENST00000621245 CFAP44Q96MT7 982 aa14.92□□□□□ -0.02
CPNE3-210ENST00000621245 TRMT112Q9UI30 125 aaKnown RBP14.92□□□□□ -0.02
CPNE3-210ENST00000621245 ATP6V0A2Q9Y487 856 aa14.92□□□□□ -0.02
CPNE3-210ENST00000621245 SCN9AQ15858 1988 aa14.92□□□□□ -0.02
CPNE3-210ENST00000621245 HSPA1AP0DMV8 641 aaKnown RBP14.91□□□□□ -0.02
CPNE3-210ENST00000621245 HSPA1BP0DMV9 641 aaKnown RBP14.91□□□□□ -0.02
CPNE3-210ENST00000621245 RTL5Q5HYW3 569 aaPredicted RBP14.91□□□□□ -0.02
CPNE3-210ENST00000621245 MAP1SQ66K74 1059 aaPredicted RBP14.91□□□□□ -0.02
CPNE3-210ENST00000621245 CC2D2BQ6DHV5 1058 aa14.91□□□□□ -0.02
CPNE3-210ENST00000621245 PAXIP1Q6ZW49 1069 aaPredicted RBP14.91□□□□□ -0.02
CPNE3-210ENST00000621245 GPC2Q8N158 579 aa14.91□□□□□ -0.02
CPNE3-210ENST00000621245 ISCA1Q9BUE6 129 aa14.91□□□□□ -0.02
CPNE3-210ENST00000621245 MYH3P11055 1940 aa14.9□□□□□ -0.02
CPNE3-210ENST00000621245 ELL2O00472 640 aaPredicted RBP14.9□□□□□ -0.02
CPNE3-210ENST00000621245 PPIP5K2O43314 1243 aa14.9□□□□□ -0.02
CPNE3-210ENST00000621245 HSP90AB3PQ58FF7 597 aa14.9□□□□□ -0.02
CPNE3-210ENST00000621245 PLBD2Q8NHP8 589 aa14.9□□□□□ -0.02
CPNE3-210ENST00000621245 FAM89AQ96GI7 184 aa14.9□□□□□ -0.02
CPNE3-210ENST00000621245 PHAXQ9H814 394 aaKnown RBP14.9□□□□□ -0.02
CPNE3-210ENST00000621245 CREBZFQ9NS37 354 aa14.9□□□□□ -0.02
CPNE3-210ENST00000621245 SH3TC1Q8TE82 1336 aa14.9□□□□□ -0.02
CPNE3-210ENST00000621245 CNTNAP1P78357 1384 aa14.89□□□□□ -0.03
CPNE3-210ENST00000621245 HOXB7P09629 217 aa14.89□□□□□ -0.03
CPNE3-210ENST00000621245 EPS15P42566 896 aa14.89□□□□□ -0.03
CPNE3-210ENST00000621245 C8orf58Q8NAV2 365 aa14.89□□□□□ -0.03
CPNE3-210ENST00000621245 JDP2Q8WYK2 163 aa14.89□□□□□ -0.03
CPNE3-210ENST00000621245 CLEC11AQ9Y240 323 aa14.89□□□□□ -0.03
CPNE3-210ENST00000621245 POLR2AP24928 1970 aaKnown RBP14.88□□□□□ -0.03
CPNE3-210ENST00000621245 EIF6P56537 245 aaKnown RBP14.88□□□□□ -0.03
CPNE3-210ENST00000621245 ANKRD13DQ6ZTN6 518 aa14.88□□□□□ -0.03
CPNE3-210ENST00000621245 CELF1Q92879 486 aaKnown RBP14.88□□□□□ -0.03
CPNE3-210ENST00000621245 RTFDC1Q9BY42 306 aaPredicted RBP14.88□□□□□ -0.03
CPNE3-210ENST00000621245 IFT57Q9NWB7 429 aa14.88□□□□□ -0.03
CPNE3-210ENST00000621245 DBF4Q9UBU7 674 aaPredicted RBP14.88□□□□□ -0.03
CPNE3-210ENST00000621245 THSD7BQ9C0I4 1608 aa14.88□□□□□ -0.03
CPNE3-210ENST00000621245 ZNF646O15015 1829 aaPredicted RBP14.87□□□□□ -0.03
CPNE3-210ENST00000621245 SHTN1A0MZ66 631 aa14.87□□□□□ -0.03
CPNE3-210ENST00000621245 GRAPQ13588 217 aa14.87□□□□□ -0.03
CPNE3-210ENST00000621245 NIM1KQ8IY84 436 aa14.87□□□□□ -0.03
CPNE3-210ENST00000621245 TSPYL6Q8N831 410 aa14.87□□□□□ -0.03
CPNE3-210ENST00000621245 GRAPLQ8TC17 118 aaPredicted RBP14.87□□□□□ -0.03
CPNE3-210ENST00000621245 JARID2Q92833 1246 aaPredicted RBP14.87□□□□□ -0.03
CPNE3-210ENST00000621245 GPR101Q96P66 508 aaPredicted RBP14.87□□□□□ -0.03
CPNE3-210ENST00000621245 PSME4Q14997 1843 aa14.87□□□□□ -0.03
CPNE3-210ENST00000621245 YDJCA8MPS7 323 aa14.86□□□□□ -0.03
CPNE3-210ENST00000621245 CXCL9Q07325 125 aa14.86□□□□□ -0.03
CPNE3-210ENST00000621245 DPP8Q6V1X1 898 aaPredicted RBP14.86□□□□□ -0.03
CPNE3-210ENST00000621245 DDX46Q7L014 1031 aaKnown RBP14.86□□□□□ -0.03
CPNE3-210ENST00000621245 SP8Q8IXZ3 490 aa14.86□□□□□ -0.03
CPNE3-210ENST00000621245 CNTROBQ8N137 903 aa14.86□□□□□ -0.03
CPNE3-210ENST00000621245 TSR2Q969E8 191 aaKnown RBP14.86□□□□□ -0.03
CPNE3-210ENST00000621245 HYPKQ9NX55 129 aa14.86□□□□□ -0.03
CPNE3-210ENST00000621245 TRAF5O00463 557 aa14.85□□□□□ -0.03
CPNE3-210ENST00000621245 BBOX1O75936 387 aa14.85□□□□□ -0.03
CPNE3-210ENST00000621245 MPNDQ8N594 471 aa14.85□□□□□ -0.03
CPNE3-210ENST00000621245 CIZ1Q9ULV3 898 aaPredicted RBP14.85□□□□□ -0.03
CPNE3-210ENST00000621245 TMEM88BA6NKF7 163 aa14.84□□□□□ -0.03
CPNE3-210ENST00000621245 RAD17O75943 681 aa14.84□□□□□ -0.03
CPNE3-210ENST00000621245 VEGFBP49765 207 aa14.84□□□□□ -0.03
CPNE3-210ENST00000621245 GMPSP49915 693 aaPredicted RBP14.84□□□□□ -0.03
CPNE3-210ENST00000621245 GNAI1P63096 354 aa14.84□□□□□ -0.03
CPNE3-210ENST00000621245 KIAA2012Q0VF49 1180 aa14.84□□□□□ -0.03
CPNE3-210ENST00000621245 GRIPAP1Q4V328 841 aa14.84□□□□□ -0.03
CPNE3-210ENST00000621245 PNMA8AQ86V59 439 aaPredicted RBP14.84□□□□□ -0.03
CPNE3-210ENST00000621245 MYD88Q99836 296 aa14.84□□□□□ -0.03
CPNE3-210ENST00000621245 IRS4O14654 1257 aaPredicted RBP14.83□□□□□ -0.04
CPNE3-210ENST00000621245 LMOD1P29536 600 aaPredicted RBP14.83□□□□□ -0.04
CPNE3-210ENST00000621245 GPSM2P81274 684 aa14.83□□□□□ -0.04
CPNE3-210ENST00000621245 SF3B3Q15393 1217 aaKnown RBP14.83□□□□□ -0.04
CPNE3-210ENST00000621245 SEC31BQ9NQW1 1179 aa14.83□□□□□ -0.04
CPNE3-210ENST00000621245 GPRC5DQ9NZD1 345 aa14.83□□□□□ -0.04
CPNE3-210ENST00000621245 ZNRF3Q9ULT6 936 aa14.83□□□□□ -0.04
CPNE3-210ENST00000621245 A0A1B0GUL6 1792 aa14.83□□□□□ -0.04
CPNE3-210ENST00000621245 RIC3Q7Z5B4 369 aa14.82□□□□□ -0.04
CPNE3-210ENST00000621245 TRPM4Q8TD43 1214 aa14.82□□□□□ -0.04
CPNE3-210ENST00000621245 ZBTB47Q9UFB7 747 aaPredicted RBP14.82□□□□□ -0.04
CPNE3-210ENST00000621245 POLLQ9UGP5 575 aa14.82□□□□□ -0.04
CPNE3-210ENST00000621245 FOXN1O15353 648 aa14.81□□□□□ -0.04
CPNE3-210ENST00000621245 HIRAP54198 1017 aaPredicted RBP14.81□□□□□ -0.04
CPNE3-210ENST00000621245 GOLGA2Q08379 1002 aa14.81□□□□□ -0.04
CPNE3-210ENST00000621245 TRIM28Q13263 835 aaKnown RBP14.81□□□□□ -0.04
CPNE3-210ENST00000621245 CCDC85AQ96PX6 553 aaPredicted RBP14.81□□□□□ -0.04
CPNE3-210ENST00000621245 KCNQ5Q9NR82 932 aa14.81□□□□□ -0.04
CPNE3-210ENST00000621245 CACNA1FO60840 1977 aa14.81□□□□□ -0.04
CPNE3-210ENST00000621245 RASSF10A6NK89 507 aa14.8□□□□□ -0.04
CPNE3-210ENST00000621245 RIMBP2O15034 1052 aa14.8□□□□□ -0.04
CPNE3-210ENST00000621245 CST9Q5W186 159 aa14.8□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 77.2 ms