RNA–Protein interactions for RNA: ENST00000618469.1

BRCA1-228, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 718 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-228ENST00000618469 CCDC93Q567U6 631 aa20.5■□□□□ 0.87
BRCA1-228ENST00000618469 SYNE4Q8N205 404 aa20.5■□□□□ 0.87
BRCA1-228ENST00000618469 L3MBTL3Q96JM7 780 aaPredicted RBP20.5■□□□□ 0.87
BRCA1-228ENST00000618469 VAMP4O75379 141 aa20.49■□□□□ 0.87
BRCA1-228ENST00000618469 EPHX2P34913 555 aa20.49■□□□□ 0.87
BRCA1-228ENST00000618469 FAM161AQ3B820 660 aa20.49■□□□□ 0.87
BRCA1-228ENST00000618469 SLC10A5Q5PT55 438 aa20.49■□□□□ 0.87
BRCA1-228ENST00000618469 G2E3Q7L622 706 aa20.49■□□□□ 0.87
BRCA1-228ENST00000618469 MIER1Q8N108 512 aa20.49■□□□□ 0.87
BRCA1-228ENST00000618469 C7orf43Q8WVR3 580 aa20.49■□□□□ 0.87
BRCA1-228ENST00000618469 RBM17Q96I25 401 aaKnown RBP20.49■□□□□ 0.87
BRCA1-228ENST00000618469 HACL1Q9UJ83 578 aa20.49■□□□□ 0.87
BRCA1-228ENST00000618469 MAP3K2Q9Y2U5 619 aa20.49■□□□□ 0.87
BRCA1-228ENST00000618469 HSPA8P11142 646 aaKnown RBP20.48■□□□□ 0.87
BRCA1-228ENST00000618469 HOXA10P31260 410 aaPredicted RBP20.48■□□□□ 0.87
BRCA1-228ENST00000618469 FMR1Q06787 632 aaKnown RBP eCLIP20.48■□□□□ 0.87
BRCA1-228ENST00000618469 FAM89AQ96GI7 184 aa20.48■□□□□ 0.87
BRCA1-228ENST00000618469 ABHD8Q96I13 439 aa20.48■□□□□ 0.87
BRCA1-228ENST00000618469 PI4KAP2A4QPH2 592 aa20.47■□□□□ 0.87
BRCA1-228ENST00000618469 FLIIQ13045 1269 aa20.47■□□□□ 0.87
BRCA1-228ENST00000618469 GRM1Q13255 1194 aa20.47■□□□□ 0.87
BRCA1-228ENST00000618469 TRIM28Q13263 835 aaKnown RBP20.47■□□□□ 0.87
BRCA1-228ENST00000618469 DEFB115Q30KQ5 88 aa20.47■□□□□ 0.87
BRCA1-228ENST00000618469 RTL5Q5HYW3 569 aaPredicted RBP20.47■□□□□ 0.87
BRCA1-228ENST00000618469 KSR2Q6VAB6 950 aa20.47■□□□□ 0.87
BRCA1-228ENST00000618469 CNTROBQ8N137 903 aa20.47■□□□□ 0.87
BRCA1-228ENST00000618469 PI4KAP1Q8N8J0 262 aa20.47■□□□□ 0.87
BRCA1-228ENST00000618469 METTL22Q9BUU2 404 aaPredicted RBP20.47■□□□□ 0.87
BRCA1-228ENST00000618469 FKBP4Q02790 459 aaKnown RBP eCLIP20.46■□□□□ 0.87
BRCA1-228ENST00000618469 ABT1Q9ULW3 272 aaKnown RBP20.46■□□□□ 0.87
BRCA1-228ENST00000618469 ABCC4O15439 1325 aa20.46■□□□□ 0.87
BRCA1-228ENST00000618469 ADAMTSL1Q8N6G6 1762 aa20.45■□□□□ 0.86
BRCA1-228ENST00000618469 E9PSI1 815 aa20.45■□□□□ 0.86
BRCA1-228ENST00000618469 PPEF1O14829 653 aaPredicted RBP20.45■□□□□ 0.86
BRCA1-228ENST00000618469 FKBP5Q13451 457 aaPredicted RBP20.45■□□□□ 0.86
BRCA1-228ENST00000618469 CRAMP1Q96RY5 1269 aa20.45■□□□□ 0.86
BRCA1-228ENST00000618469 CWC25Q9NXE8 425 aaPredicted RBP20.45■□□□□ 0.86
BRCA1-228ENST00000618469 WDR33Q9C0J8 1336 aaKnown RBP20.45■□□□□ 0.86
BRCA1-228ENST00000618469 SNED1Q8TER0 1413 aa20.44■□□□□ 0.86
BRCA1-228ENST00000618469 TAF1P21675 1872 aa20.44■□□□□ 0.86
BRCA1-228ENST00000618469 NEXNQ0ZGT2 675 aa20.44■□□□□ 0.86
BRCA1-228ENST00000618469 PAXIP1Q6ZW49 1069 aaPredicted RBP20.44■□□□□ 0.86
BRCA1-228ENST00000618469 CCDC191Q8NCU4 936 aa20.44■□□□□ 0.86
BRCA1-228ENST00000618469 IRS4O14654 1257 aaPredicted RBP20.43■□□□□ 0.86
BRCA1-228ENST00000618469 SLC51AQ86UW1 340 aa20.43■□□□□ 0.86
BRCA1-228ENST00000618469 ZBTB38Q8NAP3 1195 aaPredicted RBP20.43■□□□□ 0.86
BRCA1-228ENST00000618469 GJA3Q9Y6H8 435 aa20.43■□□□□ 0.86
BRCA1-228ENST00000618469 RASSF10A6NK89 507 aa20.42■□□□□ 0.86
BRCA1-228ENST00000618469 CCDC85CA6NKD9 419 aa20.42■□□□□ 0.86
BRCA1-228ENST00000618469 SLC34A2O95436 690 aa20.42■□□□□ 0.86
BRCA1-228ENST00000618469 IARSP41252 1262 aaKnown RBP20.42■□□□□ 0.86
BRCA1-228ENST00000618469 DDX46Q7L014 1031 aaKnown RBP20.42■□□□□ 0.86
BRCA1-228ENST00000618469 RTKN2Q8IZC4 609 aa20.42■□□□□ 0.86
BRCA1-228ENST00000618469 TSKSQ9UJT2 592 aa20.42■□□□□ 0.86
BRCA1-228ENST00000618469 LRRC37AA6NMS7 1700 aa20.41■□□□□ 0.86
BRCA1-228ENST00000618469 PCCAP05165 728 aaPredicted RBP20.41■□□□□ 0.86
BRCA1-228ENST00000618469 IGKV5-2P06315 115 aa20.41■□□□□ 0.86
BRCA1-228ENST00000618469 SLFN5Q08AF3 891 aa20.41■□□□□ 0.86
BRCA1-228ENST00000618469 CWF19L2Q2TBE0 894 aaKnown RBP20.41■□□□□ 0.86
BRCA1-228ENST00000618469 CDCA7LQ96GN5 454 aa20.41■□□□□ 0.86
BRCA1-228ENST00000618469 COL4A1P02462 1669 aa20.41■□□□□ 0.86
BRCA1-228ENST00000618469 MYH3P11055 1940 aa20.4■□□□□ 0.86
BRCA1-228ENST00000618469 CC2D2BQ6DHV5 1058 aa20.4■□□□□ 0.86
BRCA1-228ENST00000618469 DNAAF4Q8WXU2 420 aa20.4■□□□□ 0.86
BRCA1-228ENST00000618469 JARID2Q92833 1246 aaPredicted RBP20.4■□□□□ 0.86
BRCA1-228ENST00000618469 LTBP1Q14766 1721 aa20.39■□□□□ 0.86
BRCA1-228ENST00000618469 NEURL1BA8MQ27 555 aa20.39■□□□□ 0.85
BRCA1-228ENST00000618469 FZD9O00144 591 aa20.39■□□□□ 0.85
BRCA1-228ENST00000618469 GRAPQ13588 217 aa20.39■□□□□ 0.85
BRCA1-228ENST00000618469 PNMA8AQ86V59 439 aaPredicted RBP20.39■□□□□ 0.85
BRCA1-228ENST00000618469 GRAPLQ8TC17 118 aaPredicted RBP20.39■□□□□ 0.85
BRCA1-228ENST00000618469 COL4A5P29400 1685 aa20.38■□□□□ 0.85
BRCA1-228ENST00000618469 HSP90B1P14625 803 aaKnown RBP20.38■□□□□ 0.85
BRCA1-228ENST00000618469 MAP2K1Q02750 393 aaPredicted RBP20.38■□□□□ 0.85
BRCA1-228ENST00000618469 SF3B3Q15393 1217 aaKnown RBP20.38■□□□□ 0.85
BRCA1-228ENST00000618469 CYP4F22Q6NT55 531 aa20.38■□□□□ 0.85
BRCA1-228ENST00000618469 TMX4Q9H1E5 349 aaPredicted RBP20.38■□□□□ 0.85
BRCA1-228ENST00000618469 CDHR2Q9BYE9 1310 aa20.37■□□□□ 0.85
BRCA1-228ENST00000618469 TRAF5O00463 557 aa20.37■□□□□ 0.85
BRCA1-228ENST00000618469 CAPNS2Q96L46 248 aa20.37■□□□□ 0.85
BRCA1-228ENST00000618469 PSMD1Q99460 953 aa20.37■□□□□ 0.85
BRCA1-228ENST00000618469 ATP6V0A2Q9Y487 856 aa20.37■□□□□ 0.85
BRCA1-228ENST00000618469 F6X3S4 739 aa20.36■□□□□ 0.85
BRCA1-228ENST00000618469 EPS15P42566 896 aa20.36■□□□□ 0.85
BRCA1-228ENST00000618469 GPC2Q8N158 579 aa20.36■□□□□ 0.85
BRCA1-228ENST00000618469 SPEF2Q9C093 1822 aa20.35■□□□□ 0.85
BRCA1-228ENST00000618469 PDE8AO60658 829 aa20.35■□□□□ 0.85
BRCA1-228ENST00000618469 AOC2O75106 756 aa20.35■□□□□ 0.85
BRCA1-228ENST00000618469 BBOX1O75936 387 aa20.35■□□□□ 0.85
BRCA1-228ENST00000618469 GRIPAP1Q4V328 841 aa20.35■□□□□ 0.85
BRCA1-228ENST00000618469 LINS1Q8NG48 757 aa20.35■□□□□ 0.85
BRCA1-228ENST00000618469 JDP2Q8WYK2 163 aa20.35■□□□□ 0.85
BRCA1-228ENST00000618469 CELF1Q92879 486 aaKnown RBP20.35■□□□□ 0.85
BRCA1-228ENST00000618469 DUOX1Q9NRD9 1551 aa20.34■□□□□ 0.85
BRCA1-228ENST00000618469 GCKRQ14397 625 aa20.34■□□□□ 0.85
BRCA1-228ENST00000618469 CCDC152Q4G0S7 254 aa20.34■□□□□ 0.85
BRCA1-228ENST00000618469 UBE3BQ7Z3V4 1068 aa20.34■□□□□ 0.85
BRCA1-228ENST00000618469 GPR101Q96P66 508 aaPredicted RBP20.34■□□□□ 0.85
BRCA1-228ENST00000618469 CCDC85AQ96PX6 553 aaPredicted RBP20.34■□□□□ 0.85
BRCA1-228ENST00000618469 TRPM7Q96QT4 1865 aa20.33■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms