RNA–Protein interactions for RNA: ENST00000616974.1

LINC00540-202, long intergenic non-protein coding RNA 540, humanhuman

TSL 1 (best)

Gene LINC00540, Length 2,143 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-202ENST00000616974 RLBP1P12271 317 aa17.12■□□□□ 0.33
LINC00540-202ENST00000616974 BRPF1P55201 1214 aaPredicted RBP17.12■□□□□ 0.33
LINC00540-202ENST00000616974 SRCIN1Q9C0H9 1055 aa17.12■□□□□ 0.33
LINC00540-202ENST00000616974 GREM2Q9H772 168 aa17.12■□□□□ 0.33
LINC00540-202ENST00000616974 WTIPA6NIX2 430 aaPredicted RBP17.12■□□□□ 0.33
LINC00540-202ENST00000616974 COL4A5P29400 1685 aa17.12■□□□□ 0.33
LINC00540-202ENST00000616974 TTLL11Q8NHH1 800 aa17.11■□□□□ 0.33
LINC00540-202ENST00000616974 SUCLG2Q96I99 432 aa17.11■□□□□ 0.33
LINC00540-202ENST00000616974 CDHR2Q9BYE9 1310 aa17.11■□□□□ 0.33
LINC00540-202ENST00000616974 SF3B3Q15393 1217 aaKnown RBP17.11■□□□□ 0.33
LINC00540-202ENST00000616974 CNKSR1Q969H4 720 aa17.11■□□□□ 0.33
LINC00540-202ENST00000616974 USP44Q9H0E7 712 aa17.11■□□□□ 0.33
LINC00540-202ENST00000616974 LRRC37AA6NMS7 1700 aa17.11■□□□□ 0.33
LINC00540-202ENST00000616974 DICER1Q9UPY3 1922 aaKnown RBP17.1■□□□□ 0.33
LINC00540-202ENST00000616974 GRM8O00222 908 aa17.1■□□□□ 0.33
LINC00540-202ENST00000616974 GRIN3BO60391 1043 aa17.1■□□□□ 0.33
LINC00540-202ENST00000616974 PDE8AO60658 829 aa17.1■□□□□ 0.33
LINC00540-202ENST00000616974 CTSWP56202 376 aa17.1■□□□□ 0.33
LINC00540-202ENST00000616974 FOXO4P98177 505 aa17.1■□□□□ 0.33
LINC00540-202ENST00000616974 FAM161AQ3B820 660 aa17.1■□□□□ 0.33
LINC00540-202ENST00000616974 RBM17Q96I25 401 aaKnown RBP17.09■□□□□ 0.33
LINC00540-202ENST00000616974 DUOX1Q9NRD9 1551 aa17.09■□□□□ 0.33
LINC00540-202ENST00000616974 PPEF1O14829 653 aaPredicted RBP17.09■□□□□ 0.33
LINC00540-202ENST00000616974 LTBP1Q14766 1721 aa17.08■□□□□ 0.33
LINC00540-202ENST00000616974 TIAM2Q8IVF5 1701 aa17.08■□□□□ 0.33
LINC00540-202ENST00000616974 DCAF8L1A6NGE4 600 aa17.08■□□□□ 0.33
LINC00540-202ENST00000616974 ATF7IPQ6VMQ6 1270 aa17.08■□□□□ 0.33
LINC00540-202ENST00000616974 CRAMP1Q96RY5 1269 aa17.08■□□□□ 0.33
LINC00540-202ENST00000616974 C9orf78Q9NZ63 289 aaPredicted RBP17.08■□□□□ 0.33
LINC00540-202ENST00000616974 KIF16BQ96L93 1317 aa17.08■□□□□ 0.32
LINC00540-202ENST00000616974 GRAPQ13588 217 aa17.08■□□□□ 0.32
LINC00540-202ENST00000616974 DDX46Q7L014 1031 aaKnown RBP17.08■□□□□ 0.32
LINC00540-202ENST00000616974 GRAPLQ8TC17 118 aaPredicted RBP17.08■□□□□ 0.32
LINC00540-202ENST00000616974 GPR101Q96P66 508 aaPredicted RBP17.08■□□□□ 0.32
LINC00540-202ENST00000616974 MEIS3Q99687 375 aa17.08■□□□□ 0.32
LINC00540-202ENST00000616974 A0A1B0GUL6 1792 aa17.07■□□□□ 0.32
LINC00540-202ENST00000616974 ALDH1L1O75891 902 aa17.07■□□□□ 0.32
LINC00540-202ENST00000616974 ALDH1B1P30837 517 aa17.07■□□□□ 0.32
LINC00540-202ENST00000616974 TMEM57Q8N5G2 664 aa17.07■□□□□ 0.32
LINC00540-202ENST00000616974 ZNF277Q9NRM2 450 aaPredicted RBP17.07■□□□□ 0.32
LINC00540-202ENST00000616974 C20orf194Q5TEA3 1177 aa17.06■□□□□ 0.32
LINC00540-202ENST00000616974 C9orf131Q5VYM1 1079 aa17.06■□□□□ 0.32
LINC00540-202ENST00000616974 PANK1Q8TE04 598 aa17.06■□□□□ 0.32
LINC00540-202ENST00000616974 ZNF594Q96JF6 807 aaPredicted RBP17.06■□□□□ 0.32
LINC00540-202ENST00000616974 PDZRN3Q9UPQ7 1066 aa17.06■□□□□ 0.32
LINC00540-202ENST00000616974 YY1P25490 414 aa17.06■□□□□ 0.32
LINC00540-202ENST00000616974 LMBR1LQ6UX01 489 aa17.06■□□□□ 0.32
LINC00540-202ENST00000616974 BICC1Q9H694 974 aaKnown RBP17.06■□□□□ 0.32
LINC00540-202ENST00000616974 RCAN3Q9UKA8 241 aa17.06■□□□□ 0.32
LINC00540-202ENST00000616974 ANKRD44Q8N8A2 993 aa17.05■□□□□ 0.32
LINC00540-202ENST00000616974 PLA2G12BQ9BX93 195 aa17.05■□□□□ 0.32
LINC00540-202ENST00000616974 UTYO14607 1347 aa17.05■□□□□ 0.32
LINC00540-202ENST00000616974 CSF1RP07333 972 aa17.05■□□□□ 0.32
LINC00540-202ENST00000616974 KLHDC4Q8TBB5 520 aa17.05■□□□□ 0.32
LINC00540-202ENST00000616974 API5Q9BZZ5 524 aaKnown RBP17.05■□□□□ 0.32
LINC00540-202ENST00000616974 RNF181Q9P0P0 153 aa17.05■□□□□ 0.32
LINC00540-202ENST00000616974 CHMP3Q9Y3E7 222 aa17.05■□□□□ 0.32
LINC00540-202ENST00000616974 SNAP23O00161 211 aa17.04■□□□□ 0.32
LINC00540-202ENST00000616974 ITGA6P23229 1130 aa17.04■□□□□ 0.32
LINC00540-202ENST00000616974 CCDC152Q4G0S7 254 aa17.04■□□□□ 0.32
LINC00540-202ENST00000616974 ZKSCAN2Q63HK3 967 aa17.04■□□□□ 0.32
LINC00540-202ENST00000616974 ZNF526Q8TF50 670 aaPredicted RBP17.04■□□□□ 0.32
LINC00540-202ENST00000616974 ARHGAP45Q92619 1136 aa17.04■□□□□ 0.32
LINC00540-202ENST00000616974 ATP6V0A2Q9Y487 856 aa17.04■□□□□ 0.32
LINC00540-202ENST00000616974 RPS8P62241 208 aaKnown RBP17.03■□□□□ 0.32
LINC00540-202ENST00000616974 CCDC93Q567U6 631 aa17.03■□□□□ 0.32
LINC00540-202ENST00000616974 INTS3Q68E01 1043 aaKnown RBP17.03■□□□□ 0.32
LINC00540-202ENST00000616974 TAOK3Q9H2K8 898 aa17.03■□□□□ 0.32
LINC00540-202ENST00000616974 SCN9AQ15858 1988 aa17.02■□□□□ 0.32
LINC00540-202ENST00000616974 GPSM2P81274 684 aa17.02■□□□□ 0.32
LINC00540-202ENST00000616974 C1orf115Q9H7X2 142 aa17.02■□□□□ 0.31
LINC00540-202ENST00000616974 LRRFIP2Q9Y608 721 aaKnown RBP17.02■□□□□ 0.31
LINC00540-202ENST00000616974 CCT4P50991 539 aaKnown RBP17.01■□□□□ 0.31
LINC00540-202ENST00000616974 PUS3Q9BZE2 481 aaKnown RBP17.01■□□□□ 0.31
LINC00540-202ENST00000616974 BBOX1O75936 387 aa17■□□□□ 0.31
LINC00540-202ENST00000616974 POLLQ9UGP5 575 aa17■□□□□ 0.31
LINC00540-202ENST00000616974 FKBP4Q02790 459 aaKnown RBP eCLIP17■□□□□ 0.31
LINC00540-202ENST00000616974 SP8Q8IXZ3 490 aa17■□□□□ 0.31
LINC00540-202ENST00000616974 ZNF784Q8NCA9 323 aaPredicted RBP17■□□□□ 0.31
LINC00540-202ENST00000616974 HELBQ8NG08 1087 aaPredicted RBP17■□□□□ 0.31
LINC00540-202ENST00000616974 NSFL1CQ9UNZ2 370 aaKnown RBP17■□□□□ 0.31
LINC00540-202ENST00000616974 LMNB1P20700 586 aa16.99■□□□□ 0.31
LINC00540-202ENST00000616974 AOC3Q16853 763 aa16.99■□□□□ 0.31
LINC00540-202ENST00000616974 DZIP1LQ8IYY4 767 aaKnown RBP16.99■□□□□ 0.31
LINC00540-202ENST00000616974 IPO8O15397 1037 aaKnown RBP16.99■□□□□ 0.31
LINC00540-202ENST00000616974 KLRK1P26718 216 aa16.99■□□□□ 0.31
LINC00540-202ENST00000616974 ANKRD18AQ8IVF6 992 aa16.99■□□□□ 0.31
LINC00540-202ENST00000616974 RTL9Q8NET4 1388 aa16.99■□□□□ 0.31
LINC00540-202ENST00000616974 RABL6Q3YEC7 729 aaPredicted RBP16.98■□□□□ 0.31
LINC00540-202ENST00000616974 ITPRIPQ8IWB1 547 aa16.98■□□□□ 0.31
LINC00540-202ENST00000616974 TAF5LO75529 589 aa16.97■□□□□ 0.31
LINC00540-202ENST00000616974 UBTFL1P0CB47 393 aaPredicted RBP16.97■□□□□ 0.31
LINC00540-202ENST00000616974 DPP8Q6V1X1 898 aaPredicted RBP16.97■□□□□ 0.31
LINC00540-202ENST00000616974 MPNDQ8N594 471 aa16.97■□□□□ 0.31
LINC00540-202ENST00000616974 MINPP1Q9UNW1 487 aa16.97■□□□□ 0.31
LINC00540-202ENST00000616974 COG6Q9Y2V7 657 aa16.97■□□□□ 0.31
LINC00540-202ENST00000616974 LTBP3Q9NS15 1303 aa16.97■□□□□ 0.31
LINC00540-202ENST00000616974 FTSJ3Q8IY81 847 aaKnown RBP16.97■□□□□ 0.31
LINC00540-202ENST00000616974 RTKN2Q8IZC4 609 aa16.97■□□□□ 0.31
LINC00540-202ENST00000616974 ZNF541Q9H0D2 1346 aa16.96■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 10.5 ms