RNA–Protein interactions for RNA: ENST00000612417.4

CDH1-213, Transcript of cadherin 1, humanhuman

TSL 5 BASIC

Gene CDH1, Length 2,068 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH1-213ENST00000612417 CHAMP1Q96JM3 812 aa17.66■□□□□ 0.42
CDH1-213ENST00000612417 RBM27Q9P2N5 1060 aaKnown RBP17.66■□□□□ 0.42
CDH1-213ENST00000612417 RBSNQ9H1K0 784 aa17.65■□□□□ 0.42
CDH1-213ENST00000612417 HS1BP3Q53T59 392 aa17.65■□□□□ 0.42
CDH1-213ENST00000612417 CWC27Q6UX04 472 aaKnown RBP17.65■□□□□ 0.42
CDH1-213ENST00000612417 RASEFQ8IZ41 740 aa17.65■□□□□ 0.42
CDH1-213ENST00000612417 KCNB2Q92953 911 aa17.65■□□□□ 0.42
CDH1-213ENST00000612417 PDLIM2Q96JY6 352 aa17.65■□□□□ 0.42
CDH1-213ENST00000612417 DIAPH3Q9NSV4 1193 aa17.65■□□□□ 0.42
CDH1-213ENST00000612417 NSFL1CQ9UNZ2 370 aaKnown RBP17.65■□□□□ 0.42
CDH1-213ENST00000612417 PA2G4Q9UQ80 394 aaKnown RBP17.65■□□□□ 0.42
CDH1-213ENST00000612417 RPAP1Q9BWH6 1393 aaPredicted RBP17.65■□□□□ 0.42
CDH1-213ENST00000612417 LOC102724428A0A0B4J2F2 783 aa17.64■□□□□ 0.41
CDH1-213ENST00000612417 SIK1P57059 783 aa17.64■□□□□ 0.41
CDH1-213ENST00000612417 EPHA10Q5JZY3 1008 aa17.64■□□□□ 0.41
CDH1-213ENST00000612417 FOXD4L5Q5VV16 416 aaPredicted RBP17.64■□□□□ 0.41
CDH1-213ENST00000612417 FOXD4L4Q8WXT5 416 aaPredicted RBP17.64■□□□□ 0.41
CDH1-213ENST00000612417 SMARCC1Q92922 1105 aaPredicted RBP17.64■□□□□ 0.41
CDH1-213ENST00000612417 GJD4Q96KN9 370 aaPredicted RBP17.64■□□□□ 0.41
CDH1-213ENST00000612417 ZBTB1Q9Y2K1 713 aa17.64■□□□□ 0.41
CDH1-213ENST00000612417 TJP1Q07157 1748 aa17.64■□□□□ 0.41
CDH1-213ENST00000612417 TMEM87AQ8NBN3 555 aa17.63■□□□□ 0.41
CDH1-213ENST00000612417 CCDC191Q8NCU4 936 aa17.63■□□□□ 0.41
CDH1-213ENST00000612417 EVI5LQ96CN4 794 aa17.63■□□□□ 0.41
CDH1-213ENST00000612417 LIMCH1Q9UPQ0 1083 aa17.63■□□□□ 0.41
CDH1-213ENST00000612417 IFIT2P09913 472 aaKnown RBP17.63■□□□□ 0.41
CDH1-213ENST00000612417 AK2P54819 239 aa17.63■□□□□ 0.41
CDH1-213ENST00000612417 TCIRG1Q13488 830 aa17.63■□□□□ 0.41
CDH1-213ENST00000612417 TM6SF1Q9BZW5 370 aa17.63■□□□□ 0.41
CDH1-213ENST00000612417 PALLDQ8WX93 1383 aa17.62■□□□□ 0.41
CDH1-213ENST00000612417 G3BP1Q13283 466 aaKnown RBP eCLIP17.62■□□□□ 0.41
CDH1-213ENST00000612417 RUFY3Q7L099 469 aa17.62■□□□□ 0.41
CDH1-213ENST00000612417 ZSCAN30Q86W11 494 aa17.62■□□□□ 0.41
CDH1-213ENST00000612417 SYAP1Q96A49 352 aaPredicted RBP17.62■□□□□ 0.41
CDH1-213ENST00000612417 SNRKQ9NRH2 765 aa17.62■□□□□ 0.41
CDH1-213ENST00000612417 ZSCAN21Q9Y5A6 473 aaPredicted RBP17.62■□□□□ 0.41
CDH1-213ENST00000612417 MAP3K15Q6ZN16 1313 aa17.61■□□□□ 0.41
CDH1-213ENST00000612417 SYCE3A1L190 88 aa17.61■□□□□ 0.41
CDH1-213ENST00000612417 H7C1W4 665 aa17.61■□□□□ 0.41
CDH1-213ENST00000612417 HIP1O00291 1037 aa17.61■□□□□ 0.41
CDH1-213ENST00000612417 FAM182BQ5T319 152 aa17.61■□□□□ 0.41
CDH1-213ENST00000612417 SIL1Q9H173 461 aa17.61■□□□□ 0.41
CDH1-213ENST00000612417 TRPC5Q9UL62 973 aaPredicted RBP17.61■□□□□ 0.41
CDH1-213ENST00000612417 SASH1O94885 1247 aa17.6■□□□□ 0.41
CDH1-213ENST00000612417 IL6STP40189 918 aaPredicted RBP17.6■□□□□ 0.41
CDH1-213ENST00000612417 VPS53Q5VIR6 699 aa17.6■□□□□ 0.41
CDH1-213ENST00000612417 AACSQ86V21 672 aa17.6■□□□□ 0.41
CDH1-213ENST00000612417 CCDC87Q9NVE4 849 aa17.6■□□□□ 0.41
CDH1-213ENST00000612417 CHMP3Q9Y3E7 222 aa17.6■□□□□ 0.41
CDH1-213ENST00000612417 CRKLP46109 303 aaKnown RBP17.6■□□□□ 0.41
CDH1-213ENST00000612417 CASP7P55210 303 aa17.6■□□□□ 0.41
CDH1-213ENST00000612417 ISCA1Q9BUE6 129 aa17.6■□□□□ 0.41
CDH1-213ENST00000612417 TBC1D2BQ9UPU7 963 aa17.6■□□□□ 0.41
CDH1-213ENST00000612417 CASTP20810 708 aaKnown RBP17.59■□□□□ 0.41
CDH1-213ENST00000612417 PTH1RQ03431 593 aa17.59■□□□□ 0.41
CDH1-213ENST00000612417 ITPK1Q13572 414 aa17.59■□□□□ 0.41
CDH1-213ENST00000612417 HLFQ16534 295 aa17.59■□□□□ 0.41
CDH1-213ENST00000612417 DZIP3Q86Y13 1208 aaKnown RBP17.59■□□□□ 0.41
CDH1-213ENST00000612417 KLHDC4Q8TBB5 520 aa17.59■□□□□ 0.41
CDH1-213ENST00000612417 ZSWIM6Q9HCJ5 1215 aa17.59■□□□□ 0.41
CDH1-213ENST00000612417 CCDC171Q6TFL3 1326 aa17.59■□□□□ 0.41
CDH1-213ENST00000612417 THSD7AQ9UPZ6 1657 aa17.59■□□□□ 0.41
CDH1-213ENST00000612417 NECTIN1Q15223 517 aa17.59■□□□□ 0.41
CDH1-213ENST00000612417 INTS5Q6P9B9 1019 aaKnown RBP17.59■□□□□ 0.41
CDH1-213ENST00000612417 LMBR1LQ6UX01 489 aa17.59■□□□□ 0.41
CDH1-213ENST00000612417 GIGYF2Q6Y7W6 1299 aaKnown RBP17.59■□□□□ 0.41
CDH1-213ENST00000612417 PHF14O94880 888 aa17.58■□□□□ 0.4
CDH1-213ENST00000612417 ZSCAN22P10073 491 aaPredicted RBP17.58■□□□□ 0.4
CDH1-213ENST00000612417 GPTP24298 496 aa17.58■□□□□ 0.4
CDH1-213ENST00000612417 HSP90AB3PQ58FF7 597 aa17.58■□□□□ 0.4
CDH1-213ENST00000612417 EAF2Q96CJ1 260 aaPredicted RBP17.58■□□□□ 0.4
CDH1-213ENST00000612417 ZSCAN31Q96LW9 406 aaPredicted RBP17.58■□□□□ 0.4
CDH1-213ENST00000612417 SH2B1Q9NRF2 756 aaPredicted RBP17.58■□□□□ 0.4
CDH1-213ENST00000612417 COL15A1P39059 1388 aa17.58■□□□□ 0.4
CDH1-213ENST00000612417 RABL6Q3YEC7 729 aaPredicted RBP17.57■□□□□ 0.4
CDH1-213ENST00000612417 USP48Q86UV5 1035 aa17.57■□□□□ 0.4
CDH1-213ENST00000612417 QTRT2Q9H974 415 aaKnown RBP17.57■□□□□ 0.4
CDH1-213ENST00000612417 STX6O43752 255 aa17.57■□□□□ 0.4
CDH1-213ENST00000612417 TRIM28Q13263 835 aaKnown RBP17.57■□□□□ 0.4
CDH1-213ENST00000612417 PTF1AQ7RTS3 328 aa17.57■□□□□ 0.4
CDH1-213ENST00000612417 NUP98P52948 1817 aa17.56■□□□□ 0.4
CDH1-213ENST00000612417 SYT1P21579 422 aa17.56■□□□□ 0.4
CDH1-213ENST00000612417 FOXO4P98177 505 aa17.56■□□□□ 0.4
CDH1-213ENST00000612417 MAP4K1Q92918 833 aa17.56■□□□□ 0.4
CDH1-213ENST00000612417 SMC3Q9UQE7 1217 aa17.56■□□□□ 0.4
CDH1-213ENST00000612417 CYP46A1Q9Y6A2 500 aa17.56■□□□□ 0.4
CDH1-213ENST00000612417 ATRNO75882 1429 aa17.56■□□□□ 0.4
CDH1-213ENST00000612417 MYH14Q7Z406 1995 aaKnown RBP17.56■□□□□ 0.4
CDH1-213ENST00000612417 EIF5P55010 431 aaKnown RBP17.56■□□□□ 0.4
CDH1-213ENST00000612417 ADCK5Q3MIX3 580 aa17.56■□□□□ 0.4
CDH1-213ENST00000612417 PRPF40BQ6NWY9 871 aaKnown RBP17.56■□□□□ 0.4
CDH1-213ENST00000612417 SEPT12Q8IYM1 358 aa17.56■□□□□ 0.4
CDH1-213ENST00000612417 KLHL34Q8N239 644 aa17.56■□□□□ 0.4
CDH1-213ENST00000612417 JAKMIP1Q96N16 626 aaKnown RBP17.56■□□□□ 0.4
CDH1-213ENST00000612417 NAP1L5Q96NT1 182 aaPredicted RBP17.56■□□□□ 0.4
CDH1-213ENST00000612417 PDRG1Q9NUG6 133 aa17.56■□□□□ 0.4
CDH1-213ENST00000612417 ATP6V1DQ9Y5K8 247 aa17.56■□□□□ 0.4
CDH1-213ENST00000612417 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP17.56■□□□□ 0.4
CDH1-213ENST00000612417 ERVV-1B6SEH8 477 aa17.55■□□□□ 0.4
CDH1-213ENST00000612417 GADD45BO75293 160 aaPredicted RBP17.55■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms