RNA–Protein interactions for RNA: ENST00000611852.4

CCDC28A-202, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,505 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-202ENST00000611852 ZNF219Q9P2Y4 722 aaPredicted RBP20.91■□□□□ 0.94
CCDC28A-202ENST00000611852 TNNQ9UQP3 1299 aa20.91■□□□□ 0.94
CCDC28A-202ENST00000611852 MYH3P11055 1940 aa20.9■□□□□ 0.94
CCDC28A-202ENST00000611852 UTYO14607 1347 aa20.9■□□□□ 0.94
CCDC28A-202ENST00000611852 NBPF7P0C2Y1 421 aaPredicted RBP20.89■□□□□ 0.94
CCDC28A-202ENST00000611852 TAF1P21675 1872 aa20.89■□□□□ 0.94
CCDC28A-202ENST00000611852 CCDC152Q4G0S7 254 aa20.89■□□□□ 0.94
CCDC28A-202ENST00000611852 INTS3Q68E01 1043 aaKnown RBP20.89■□□□□ 0.94
CCDC28A-202ENST00000611852 ARHGAP27Q6ZUM4 889 aa20.89■□□□□ 0.94
CCDC28A-202ENST00000611852 TTLL11Q8NHH1 800 aa20.89■□□□□ 0.94
CCDC28A-202ENST00000611852 USP44Q9H0E7 712 aa20.89■□□□□ 0.94
CCDC28A-202ENST00000611852 GRAPQ13588 217 aa20.88■□□□□ 0.93
CCDC28A-202ENST00000611852 GRAPLQ8TC17 118 aaPredicted RBP20.88■□□□□ 0.93
CCDC28A-202ENST00000611852 CLUAP1Q96AJ1 413 aa20.88■□□□□ 0.93
CCDC28A-202ENST00000611852 CCDC85AQ96PX6 553 aaPredicted RBP20.88■□□□□ 0.93
CCDC28A-202ENST00000611852 PPEF1O14829 653 aaPredicted RBP20.87■□□□□ 0.93
CCDC28A-202ENST00000611852 BBOX1O75936 387 aa20.87■□□□□ 0.93
CCDC28A-202ENST00000611852 FOXO4P98177 505 aa20.87■□□□□ 0.93
CCDC28A-202ENST00000611852 SOGA3Q5TF21 947 aa20.87■□□□□ 0.93
CCDC28A-202ENST00000611852 OLFM4Q6UX06 510 aa20.87■□□□□ 0.93
CCDC28A-202ENST00000611852 SEC31BQ9NQW1 1179 aa20.87■□□□□ 0.93
CCDC28A-202ENST00000611852 COL4A1P02462 1669 aa20.87■□□□□ 0.93
CCDC28A-202ENST00000611852 CSF1RP07333 972 aa20.86■□□□□ 0.93
CCDC28A-202ENST00000611852 EPHA10Q5JZY3 1008 aa20.86■□□□□ 0.93
CCDC28A-202ENST00000611852 CELF1Q92879 486 aaKnown RBP20.86■□□□□ 0.93
CCDC28A-202ENST00000611852 RTL9Q8NET4 1388 aa20.85■□□□□ 0.93
CCDC28A-202ENST00000611852 SLC51AQ86UW1 340 aa20.85■□□□□ 0.93
CCDC28A-202ENST00000611852 KAZALD1Q96I82 304 aa20.85■□□□□ 0.93
CCDC28A-202ENST00000611852 SUCLG2Q96I99 432 aa20.85■□□□□ 0.93
CCDC28A-202ENST00000611852 GREM2Q9H772 168 aa20.85■□□□□ 0.93
CCDC28A-202ENST00000611852 CHD4Q14839 1912 aa20.85■□□□□ 0.93
CCDC28A-202ENST00000611852 FER1L6Q2WGJ9 1857 aa20.85■□□□□ 0.93
CCDC28A-202ENST00000611852 NFKBIEO00221 500 aa20.84■□□□□ 0.93
CCDC28A-202ENST00000611852 CCDC93Q567U6 631 aa20.84■□□□□ 0.93
CCDC28A-202ENST00000611852 ATP6V0A2Q9Y487 856 aa20.84■□□□□ 0.93
CCDC28A-202ENST00000611852 RPS8P62241 208 aaKnown RBP20.83■□□□□ 0.93
CCDC28A-202ENST00000611852 CC2D2BQ6DHV5 1058 aa20.83■□□□□ 0.93
CCDC28A-202ENST00000611852 FTSJ3Q8IY81 847 aaKnown RBP20.83■□□□□ 0.93
CCDC28A-202ENST00000611852 DZIP1LQ8IYY4 767 aaKnown RBP20.83■□□□□ 0.93
CCDC28A-202ENST00000611852 TMEM57Q8N5G2 664 aa20.83■□□□□ 0.93
CCDC28A-202ENST00000611852 SNED1Q8TER0 1413 aa20.83■□□□□ 0.93
CCDC28A-202ENST00000611852 RLBP1P12271 317 aa20.83■□□□□ 0.92
CCDC28A-202ENST00000611852 RASSF7Q02833 373 aa20.83■□□□□ 0.92
CCDC28A-202ENST00000611852 FAM161AQ3B820 660 aa20.83■□□□□ 0.92
CCDC28A-202ENST00000611852 LMBR1LQ6UX01 489 aa20.83■□□□□ 0.92
CCDC28A-202ENST00000611852 TMC4Q7Z404 712 aa20.83■□□□□ 0.92
CCDC28A-202ENST00000611852 SP8Q8IXZ3 490 aa20.83■□□□□ 0.92
CCDC28A-202ENST00000611852 RTKN2Q8IZC4 609 aa20.82■□□□□ 0.92
CCDC28A-202ENST00000611852 MEIS3Q99687 375 aa20.82■□□□□ 0.92
CCDC28A-202ENST00000611852 ITGA6P23229 1130 aa20.81■□□□□ 0.92
CCDC28A-202ENST00000611852 CDC5LQ99459 802 aaKnown RBP20.81■□□□□ 0.92
CCDC28A-202ENST00000611852 BICC1Q9H694 974 aaKnown RBP20.81■□□□□ 0.92
CCDC28A-202ENST00000611852 LTBP3Q9NS15 1303 aa20.8■□□□□ 0.92
CCDC28A-202ENST00000611852 PLIN1O60240 522 aa20.8■□□□□ 0.92
CCDC28A-202ENST00000611852 UBTFL1P0CB47 393 aaPredicted RBP20.8■□□□□ 0.92
CCDC28A-202ENST00000611852 RABL6Q3YEC7 729 aaPredicted RBP20.8■□□□□ 0.92
CCDC28A-202ENST00000611852 GRIPAP1Q4V328 841 aa20.8■□□□□ 0.92
CCDC28A-202ENST00000611852 ANKRD18AQ8IVF6 992 aa20.8■□□□□ 0.92
CCDC28A-202ENST00000611852 TAOK3Q9H2K8 898 aa20.8■□□□□ 0.92
CCDC28A-202ENST00000611852 SBF1O95248 1867 aa20.8■□□□□ 0.92
CCDC28A-202ENST00000611852 LRRC37AA6NMS7 1700 aa20.79■□□□□ 0.92
CCDC28A-202ENST00000611852 PRELPP51888 382 aa20.79■□□□□ 0.92
CCDC28A-202ENST00000611852 ANKRD44Q8N8A2 993 aa20.79■□□□□ 0.92
CCDC28A-202ENST00000611852 TMX4Q9H1E5 349 aaPredicted RBP20.79■□□□□ 0.92
CCDC28A-202ENST00000611852 CHMP3Q9Y3E7 222 aa20.79■□□□□ 0.92
CCDC28A-202ENST00000611852 FKBP4Q02790 459 aaKnown RBP eCLIP20.78■□□□□ 0.92
CCDC28A-202ENST00000611852 PANK1Q8TE04 598 aa20.78■□□□□ 0.92
CCDC28A-202ENST00000611852 ANKRD18BA2A2Z9 1011 aa20.78■□□□□ 0.92
CCDC28A-202ENST00000611852 GNAI3P08754 354 aa20.78■□□□□ 0.92
CCDC28A-202ENST00000611852 MS4A1P11836 297 aa20.78■□□□□ 0.92
CCDC28A-202ENST00000611852 IFIT5Q13325 482 aaKnown RBP20.78■□□□□ 0.92
CCDC28A-202ENST00000611852 PSMD1Q99460 953 aa20.78■□□□□ 0.92
CCDC28A-202ENST00000611852 LMNB1P20700 586 aa20.77■□□□□ 0.92
CCDC28A-202ENST00000611852 ITPRIPQ8IWB1 547 aa20.77■□□□□ 0.92
CCDC28A-202ENST00000611852 BSDC1Q9NW68 430 aaPredicted RBP20.77■□□□□ 0.92
CCDC28A-202ENST00000611852 HDAC5Q9UQL6 1122 aa20.77■□□□□ 0.92
CCDC28A-202ENST00000611852 CCDC57Q2TAC2 916 aa20.76■□□□□ 0.91
CCDC28A-202ENST00000611852 C9orf131Q5VYM1 1079 aa20.76■□□□□ 0.91
CCDC28A-202ENST00000611852 GOLGA6L2Q8N9W4 650 aaPredicted RBP20.76■□□□□ 0.91
CCDC28A-202ENST00000611852 CCDC88AQ3V6T2 1871 aa20.76■□□□□ 0.91
CCDC28A-202ENST00000611852 IGHMBP2P38935 993 aaKnown RBP20.75■□□□□ 0.91
CCDC28A-202ENST00000611852 MPNDQ8N594 471 aa20.75■□□□□ 0.91
CCDC28A-202ENST00000611852 RNF181Q9P0P0 153 aa20.75■□□□□ 0.91
CCDC28A-202ENST00000611852 LRRFIP2Q9Y608 721 aaKnown RBP20.75■□□□□ 0.91
CCDC28A-202ENST00000611852 SPEF2Q9C093 1822 aa20.75■□□□□ 0.91
CCDC28A-202ENST00000611852 DPP8Q6V1X1 898 aaPredicted RBP20.74■□□□□ 0.91
CCDC28A-202ENST00000611852 MPHOSPH8Q99549 860 aa20.74■□□□□ 0.91
CCDC28A-202ENST00000611852 RTFDC1Q9BY42 306 aaPredicted RBP20.74■□□□□ 0.91
CCDC28A-202ENST00000611852 ZNF277Q9NRM2 450 aaPredicted RBP20.74■□□□□ 0.91
CCDC28A-202ENST00000611852 YY1P25490 414 aa20.73■□□□□ 0.91
CCDC28A-202ENST00000611852 GPSM2P81274 684 aa20.73■□□□□ 0.91
CCDC28A-202ENST00000611852 NSFL1CQ9UNZ2 370 aaKnown RBP20.73■□□□□ 0.91
CCDC28A-202ENST00000611852 LTBP1Q14766 1721 aa20.73■□□□□ 0.91
CCDC28A-202ENST00000611852 ZBTB7BO15156 539 aaPredicted RBP20.73■□□□□ 0.91
CCDC28A-202ENST00000611852 PDE3AQ14432 1141 aa20.73■□□□□ 0.91
CCDC28A-202ENST00000611852 ZNF594Q96JF6 807 aaPredicted RBP20.73■□□□□ 0.91
CCDC28A-202ENST00000611852 MINPP1Q9UNW1 487 aa20.73■□□□□ 0.91
CCDC28A-202ENST00000611852 DUOX1Q9NRD9 1551 aa20.72■□□□□ 0.91
CCDC28A-202ENST00000611852 TAF7LQ5H9L4 462 aa20.72■□□□□ 0.91
CCDC28A-202ENST00000611852 C20orf194Q5TEA3 1177 aa20.72■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms