RNA–Protein interactions for RNA: ENST00000611848.1

SMAD4-217, Transcript of SMAD family member 4, humanhuman

TSL 5

Gene SMAD4, Length 1,648 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-217ENST00000611848 HOXA10P31260 410 aaPredicted RBP11.13□□□□□ -0.63
SMAD4-217ENST00000611848 RTL5Q5HYW3 569 aaPredicted RBP11.13□□□□□ -0.63
SMAD4-217ENST00000611848 C20orf194Q5TEA3 1177 aa11.13□□□□□ -0.63
SMAD4-217ENST00000611848 SLC4A10Q6U841 1118 aa11.13□□□□□ -0.63
SMAD4-217ENST00000611848 RBM17Q96I25 401 aaKnown RBP11.13□□□□□ -0.63
SMAD4-217ENST00000611848 API5Q9BZZ5 524 aaKnown RBP11.13□□□□□ -0.63
SMAD4-217ENST00000611848 SRCIN1Q9C0H9 1055 aa11.13□□□□□ -0.63
SMAD4-217ENST00000611848 LAMB2P55268 1798 aa11.13□□□□□ -0.63
SMAD4-217ENST00000611848 GOLGB1Q14789 3259 aaKnown RBP11.12□□□□□ -0.63
SMAD4-217ENST00000611848 CACNA1SQ13698 1873 aa11.12□□□□□ -0.63
SMAD4-217ENST00000611848 SLX4Q8IY92 1834 aa11.12□□□□□ -0.63
SMAD4-217ENST00000611848 H7C1W4 665 aa11.12□□□□□ -0.63
SMAD4-217ENST00000611848 IPO8O15397 1037 aaKnown RBP11.12□□□□□ -0.63
SMAD4-217ENST00000611848 SF3B3Q15393 1217 aaKnown RBP11.12□□□□□ -0.63
SMAD4-217ENST00000611848 CRAMP1Q96RY5 1269 aa11.12□□□□□ -0.63
SMAD4-217ENST00000611848 MYH3P11055 1940 aa11.12□□□□□ -0.63
SMAD4-217ENST00000611848 PDE8AO60658 829 aa11.11□□□□□ -0.63
SMAD4-217ENST00000611848 BCAR3O75815 825 aa11.11□□□□□ -0.63
SMAD4-217ENST00000611848 C3orf67Q6ZVT6 689 aa11.11□□□□□ -0.63
SMAD4-217ENST00000611848 SOGA3Q5TF21 947 aa11.1□□□□□ -0.63
SMAD4-217ENST00000611848 PRPF40BQ6NWY9 871 aaKnown RBP11.1□□□□□ -0.63
SMAD4-217ENST00000611848 DDX46Q7L014 1031 aaKnown RBP11.1□□□□□ -0.63
SMAD4-217ENST00000611848 UBE3BQ7Z3V4 1068 aa11.1□□□□□ -0.63
SMAD4-217ENST00000611848 JARID2Q92833 1246 aaPredicted RBP11.1□□□□□ -0.63
SMAD4-217ENST00000611848 PLA2G12BQ9BX93 195 aa11.1□□□□□ -0.63
SMAD4-217ENST00000611848 C9orf78Q9NZ63 289 aaPredicted RBP11.1□□□□□ -0.63
SMAD4-217ENST00000611848 GRM8O00222 908 aa11.09□□□□□ -0.63
SMAD4-217ENST00000611848 CASP7P55210 303 aa11.09□□□□□ -0.63
SMAD4-217ENST00000611848 CCDC152Q4G0S7 254 aa11.09□□□□□ -0.63
SMAD4-217ENST00000611848 BBOX1O75936 387 aa11.09□□□□□ -0.63
SMAD4-217ENST00000611848 CCT4P50991 539 aaKnown RBP11.09□□□□□ -0.63
SMAD4-217ENST00000611848 GRAPQ13588 217 aa11.09□□□□□ -0.63
SMAD4-217ENST00000611848 ZKSCAN2Q63HK3 967 aa11.09□□□□□ -0.63
SMAD4-217ENST00000611848 CC2D2BQ6DHV5 1058 aa11.09□□□□□ -0.63
SMAD4-217ENST00000611848 ATF7IPQ6VMQ6 1270 aa11.09□□□□□ -0.63
SMAD4-217ENST00000611848 ARHGAP27Q6ZUM4 889 aa11.09□□□□□ -0.63
SMAD4-217ENST00000611848 GRAPLQ8TC17 118 aaPredicted RBP11.09□□□□□ -0.63
SMAD4-217ENST00000611848 C7orf43Q8WVR3 580 aa11.09□□□□□ -0.63
SMAD4-217ENST00000611848 FRAT1Q92837 279 aaPredicted RBP11.09□□□□□ -0.63
SMAD4-217ENST00000611848 ABCC4O15439 1325 aa11.08□□□□□ -0.64
SMAD4-217ENST00000611848 C21orf2O43822 256 aa11.08□□□□□ -0.64
SMAD4-217ENST00000611848 CTSWP56202 376 aa11.08□□□□□ -0.64
SMAD4-217ENST00000611848 TMC4Q7Z404 712 aa11.08□□□□□ -0.64
SMAD4-217ENST00000611848 FER1L6Q2WGJ9 1857 aa11.08□□□□□ -0.64
SMAD4-217ENST00000611848 UTYO14607 1347 aa11.08□□□□□ -0.64
SMAD4-217ENST00000611848 KDM2BQ8NHM5 1336 aa11.08□□□□□ -0.64
SMAD4-217ENST00000611848 PPEF1O14829 653 aaPredicted RBP11.07□□□□□ -0.64
SMAD4-217ENST00000611848 TRIM27P14373 513 aa11.07□□□□□ -0.64
SMAD4-217ENST00000611848 TAF1P21675 1872 aa11.07□□□□□ -0.64
SMAD4-217ENST00000611848 PDE3AQ14432 1141 aa11.07□□□□□ -0.64
SMAD4-217ENST00000611848 GRIPAP1Q4V328 841 aa11.07□□□□□ -0.64
SMAD4-217ENST00000611848 CCDC93Q567U6 631 aa11.07□□□□□ -0.64
SMAD4-217ENST00000611848 SAMD1Q6SPF0 538 aaPredicted RBP11.07□□□□□ -0.64
SMAD4-217ENST00000611848 TTLL11Q8NHH1 800 aa11.07□□□□□ -0.64
SMAD4-217ENST00000611848 TMX4Q9H1E5 349 aaPredicted RBP11.07□□□□□ -0.64
SMAD4-217ENST00000611848 ZNF219Q9P2Y4 722 aaPredicted RBP11.07□□□□□ -0.64
SMAD4-217ENST00000611848 SBF1O95248 1867 aa11.07□□□□□ -0.64
SMAD4-217ENST00000611848 INTS3Q68E01 1043 aaKnown RBP11.06□□□□□ -0.64
SMAD4-217ENST00000611848 RTKN2Q8IZC4 609 aa11.06□□□□□ -0.64
SMAD4-217ENST00000611848 CCDC88AQ3V6T2 1871 aa11.06□□□□□ -0.64
SMAD4-217ENST00000611848 RTL9Q8NET4 1388 aa11.06□□□□□ -0.64
SMAD4-217ENST00000611848 CSF1RP07333 972 aa11.06□□□□□ -0.64
SMAD4-217ENST00000611848 MS4A1P11836 297 aa11.06□□□□□ -0.64
SMAD4-217ENST00000611848 RPS8P62241 208 aaKnown RBP11.06□□□□□ -0.64
SMAD4-217ENST00000611848 SP8Q8IXZ3 490 aa11.06□□□□□ -0.64
SMAD4-217ENST00000611848 CELF1Q92879 486 aaKnown RBP11.06□□□□□ -0.64
SMAD4-217ENST00000611848 USP44Q9H0E7 712 aa11.06□□□□□ -0.64
SMAD4-217ENST00000611848 ATP6V0A2Q9Y487 856 aa11.06□□□□□ -0.64
SMAD4-217ENST00000611848 NBPF7P0C2Y1 421 aaPredicted RBP11.05□□□□□ -0.64
SMAD4-217ENST00000611848 CENPQQ7L2Z9 268 aaPredicted RBP11.05□□□□□ -0.64
SMAD4-217ENST00000611848 CCDC85AQ96PX6 553 aaPredicted RBP11.05□□□□□ -0.64
SMAD4-217ENST00000611848 CDC5LQ99459 802 aaKnown RBP11.05□□□□□ -0.64
SMAD4-217ENST00000611848 TAOK3Q9H2K8 898 aa11.05□□□□□ -0.64
SMAD4-217ENST00000611848 SEC31BQ9NQW1 1179 aa11.05□□□□□ -0.64
SMAD4-217ENST00000611848 HDAC5Q9UQL6 1122 aa11.05□□□□□ -0.64
SMAD4-217ENST00000611848 LTBP3Q9NS15 1303 aa11.05□□□□□ -0.64
SMAD4-217ENST00000611848 NFKBIEO00221 500 aa11.04□□□□□ -0.64
SMAD4-217ENST00000611848 FOXO4P98177 505 aa11.04□□□□□ -0.64
SMAD4-217ENST00000611848 ANKRD18AQ8IVF6 992 aa11.04□□□□□ -0.64
SMAD4-217ENST00000611848 FTSJ3Q8IY81 847 aaKnown RBP11.04□□□□□ -0.64
SMAD4-217ENST00000611848 DZIP1LQ8IYY4 767 aaKnown RBP11.04□□□□□ -0.64
SMAD4-217ENST00000611848 CLUAP1Q96AJ1 413 aa11.04□□□□□ -0.64
SMAD4-217ENST00000611848 SUCLG2Q96I99 432 aa11.04□□□□□ -0.64
SMAD4-217ENST00000611848 GREM2Q9H772 168 aa11.04□□□□□ -0.64
SMAD4-217ENST00000611848 DICER1Q9UPY3 1922 aaKnown RBP11.03□□□□□ -0.64
SMAD4-217ENST00000611848 LMNB1P20700 586 aa11.03□□□□□ -0.64
SMAD4-217ENST00000611848 ITGA6P23229 1130 aa11.03□□□□□ -0.64
SMAD4-217ENST00000611848 FKBP4Q02790 459 aaKnown RBP eCLIP11.03□□□□□ -0.64
SMAD4-217ENST00000611848 RASSF7Q02833 373 aa11.03□□□□□ -0.64
SMAD4-217ENST00000611848 EPHA10Q5JZY3 1008 aa11.03□□□□□ -0.64
SMAD4-217ENST00000611848 OLFM4Q6UX06 510 aa11.03□□□□□ -0.64
SMAD4-217ENST00000611848 PSMD1Q99460 953 aa11.03□□□□□ -0.64
SMAD4-217ENST00000611848 ANKRD18BA2A2Z9 1011 aa11.02□□□□□ -0.64
SMAD4-217ENST00000611848 UBTFL1P0CB47 393 aaPredicted RBP11.02□□□□□ -0.64
SMAD4-217ENST00000611848 YY1P25490 414 aa11.02□□□□□ -0.64
SMAD4-217ENST00000611848 IGHMBP2P38935 993 aaKnown RBP11.02□□□□□ -0.64
SMAD4-217ENST00000611848 IFIT5Q13325 482 aaKnown RBP11.02□□□□□ -0.64
SMAD4-217ENST00000611848 FAM161AQ3B820 660 aa11.02□□□□□ -0.64
SMAD4-217ENST00000611848 LMBR1LQ6UX01 489 aa11.02□□□□□ -0.64
SMAD4-217ENST00000611848 TMEM57Q8N5G2 664 aa11.02□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 58.5 ms