RNA–Protein interactions for RNA: ENST00000610828.4

NEK3-205, Transcript of NIMA related kinase 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene NEK3, Length 2,396 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3-205ENST00000610828 BRD1O95696 1058 aa16.36■□□□□ 0.21
NEK3-205ENST00000610828 TRIM28Q13263 835 aaKnown RBP16.36■□□□□ 0.21
NEK3-205ENST00000610828 CCDC57Q2TAC2 916 aa16.36■□□□□ 0.21
NEK3-205ENST00000610828 KLHL40Q2TBA0 621 aa16.36■□□□□ 0.21
NEK3-205ENST00000610828 ZSWIM6Q9HCJ5 1215 aa16.36■□□□□ 0.21
NEK3-205ENST00000610828 PDRG1Q9NUG6 133 aa16.36■□□□□ 0.21
NEK3-205ENST00000610828 MAP3K15Q6ZN16 1313 aa16.36■□□□□ 0.21
NEK3-205ENST00000610828 DDX46Q7L014 1031 aaKnown RBP16.35■□□□□ 0.21
NEK3-205ENST00000610828 CCDC85AQ96PX6 553 aaPredicted RBP16.35■□□□□ 0.21
NEK3-205ENST00000610828 TM6SF1Q9BZW5 370 aa16.35■□□□□ 0.21
NEK3-205ENST00000610828 LMBRD1Q9NUN5 540 aa16.35■□□□□ 0.21
NEK3-205ENST00000610828 SLC27A2O14975 620 aa16.35■□□□□ 0.21
NEK3-205ENST00000610828 CYP19A1P11511 503 aaPredicted RBP16.35■□□□□ 0.21
NEK3-205ENST00000610828 PRIM1P49642 420 aaKnown RBP16.35■□□□□ 0.21
NEK3-205ENST00000610828 VPS53Q5VIR6 699 aa16.35■□□□□ 0.21
NEK3-205ENST00000610828 GIGYF2Q6Y7W6 1299 aaKnown RBP16.35■□□□□ 0.21
NEK3-205ENST00000610828 CHAMP1Q96JM3 812 aa16.35■□□□□ 0.21
NEK3-205ENST00000610828 PUS3Q9BZE2 481 aaKnown RBP16.35■□□□□ 0.21
NEK3-205ENST00000610828 GPR108Q9NPR9 543 aa16.35■□□□□ 0.21
NEK3-205ENST00000610828 A0A0G2JS52 829 aa16.34■□□□□ 0.21
NEK3-205ENST00000610828 PCCAP05165 728 aaPredicted RBP16.34■□□□□ 0.21
NEK3-205ENST00000610828 GPTP24298 496 aa16.34■□□□□ 0.21
NEK3-205ENST00000610828 HLFQ16534 295 aa16.34■□□□□ 0.21
NEK3-205ENST00000610828 RNF20Q5VTR2 975 aa16.34■□□□□ 0.21
NEK3-205ENST00000610828 ZBTB1Q9Y2K1 713 aa16.34■□□□□ 0.21
NEK3-205ENST00000610828 LRP6O75581 1613 aa16.34■□□□□ 0.21
NEK3-205ENST00000610828 PRPF40AO75400 957 aaKnown RBP16.34■□□□□ 0.21
NEK3-205ENST00000610828 CIAO1O76071 339 aa16.34■□□□□ 0.21
NEK3-205ENST00000610828 CHGBP05060 677 aa16.34■□□□□ 0.21
NEK3-205ENST00000610828 ZBTB38Q8NAP3 1195 aaPredicted RBP16.34■□□□□ 0.21
NEK3-205ENST00000610828 A0A1B0GUL7 405 aa16.33■□□□□ 0.2
NEK3-205ENST00000610828 TAF5LO75529 589 aa16.33■□□□□ 0.2
NEK3-205ENST00000610828 XRCC6P12956 609 aaKnown RBP eCLIP16.33■□□□□ 0.2
NEK3-205ENST00000610828 RTN4Q9NQC3 1192 aaKnown RBP16.33■□□□□ 0.2
NEK3-205ENST00000610828 ZNF609O15014 1411 aa16.33■□□□□ 0.2
NEK3-205ENST00000610828 NCLP19338 710 aaKnown RBP16.33■□□□□ 0.2
NEK3-205ENST00000610828 SEC62Q99442 399 aaKnown RBP16.33■□□□□ 0.2
NEK3-205ENST00000610828 ZSCAN21Q9Y5A6 473 aaPredicted RBP16.33■□□□□ 0.2
NEK3-205ENST00000610828 TNKS1BP1Q9C0C2 1729 aaKnown RBP16.32■□□□□ 0.2
NEK3-205ENST00000610828 RFX7Q2KHR2 1363 aa16.32■□□□□ 0.2
NEK3-205ENST00000610828 GOLIM4O00461 696 aa16.32■□□□□ 0.2
NEK3-205ENST00000610828 LARGE1O95461 756 aa16.32■□□□□ 0.2
NEK3-205ENST00000610828 PSMA5P28066 241 aa16.32■□□□□ 0.2
NEK3-205ENST00000610828 TAF7LQ5H9L4 462 aa16.32■□□□□ 0.2
NEK3-205ENST00000610828 SYNE4Q8N205 404 aa16.32■□□□□ 0.2
NEK3-205ENST00000610828 KBTBD3Q8NAB2 608 aa16.32■□□□□ 0.2
NEK3-205ENST00000610828 CEP126Q9P2H0 1117 aa16.32■□□□□ 0.2
NEK3-205ENST00000610828 WNK3Q9BYP7 1800 aa16.31■□□□□ 0.2
NEK3-205ENST00000610828 DDB1Q16531 1140 aa16.31■□□□□ 0.2
NEK3-205ENST00000610828 PAG1Q9NWQ8 432 aa16.31■□□□□ 0.2
NEK3-205ENST00000610828 RPAP1Q9BWH6 1393 aaPredicted RBP16.31■□□□□ 0.2
NEK3-205ENST00000610828 JCADQ9P266 1359 aa16.31■□□□□ 0.2
NEK3-205ENST00000610828 MRE11P49959 708 aa16.31■□□□□ 0.2
NEK3-205ENST00000610828 IFIT5Q13325 482 aaKnown RBP16.31■□□□□ 0.2
NEK3-205ENST00000610828 HSP90AB3PQ58FF7 597 aa16.31■□□□□ 0.2
NEK3-205ENST00000610828 CCDC129Q6ZRS4 1044 aa16.31■□□□□ 0.2
NEK3-205ENST00000610828 NLRP10Q86W26 655 aa16.31■□□□□ 0.2
NEK3-205ENST00000610828 CDCA7Q9BWT1 371 aaPredicted RBP16.31■□□□□ 0.2
NEK3-205ENST00000610828 PLA2G12BQ9BX93 195 aa16.31■□□□□ 0.2
NEK3-205ENST00000610828 SPATA31A1Q5TZJ5 1347 aa16.31■□□□□ 0.2
NEK3-205ENST00000610828 DOT1LQ8TEK3 1739 aa16.3■□□□□ 0.2
NEK3-205ENST00000610828 NUTM2BA6NNL0 878 aaPredicted RBP16.3■□□□□ 0.2
NEK3-205ENST00000610828 NUTM2EB1AL46 878 aaPredicted RBP16.3■□□□□ 0.2
NEK3-205ENST00000610828 MCMDC2Q4G0Z9 681 aa16.3■□□□□ 0.2
NEK3-205ENST00000610828 NUTM2AQ8IVF1 878 aaPredicted RBP16.3■□□□□ 0.2
NEK3-205ENST00000610828 ISY1Q9ULR0 285 aaKnown RBP16.3■□□□□ 0.2
NEK3-205ENST00000610828 TAF6LQ9Y6J9 622 aa16.3■□□□□ 0.2
NEK3-205ENST00000610828 WDR33Q9C0J8 1336 aaKnown RBP16.3■□□□□ 0.2
NEK3-205ENST00000610828 PHLPP1O60346 1717 aa16.3■□□□□ 0.2
NEK3-205ENST00000610828 IFIT1P09914 478 aaKnown RBP16.3■□□□□ 0.2
NEK3-205ENST00000610828 COL9A3Q14050 684 aaPredicted RBP16.3■□□□□ 0.2
NEK3-205ENST00000610828 BLOC1S2Q6QNY1 142 aa16.3■□□□□ 0.2
NEK3-205ENST00000610828 CCDC83Q8IWF9 413 aa16.3■□□□□ 0.2
NEK3-205ENST00000610828 GRPEL1Q9HAV7 217 aa16.3■□□□□ 0.2
NEK3-205ENST00000610828 HMG20BQ9P0W2 317 aa16.3■□□□□ 0.2
NEK3-205ENST00000610828 SMC3Q9UQE7 1217 aa16.3■□□□□ 0.2
NEK3-205ENST00000610828 LTBP4Q8N2S1 1624 aa16.3■□□□□ 0.2
NEK3-205ENST00000610828 CSF1RP07333 972 aa16.29■□□□□ 0.2
NEK3-205ENST00000610828 FOXD4L6Q3SYB3 417 aaPredicted RBP16.29■□□□□ 0.2
NEK3-205ENST00000610828 CAVIN1Q6NZI2 390 aaKnown RBP16.29■□□□□ 0.2
NEK3-205ENST00000610828 FOXD4L3Q6VB84 417 aaPredicted RBP16.29■□□□□ 0.2
NEK3-205ENST00000610828 ACSBG1Q96GR2 724 aa16.29■□□□□ 0.2
NEK3-205ENST00000610828 ZSCAN31Q96LW9 406 aaPredicted RBP16.29■□□□□ 0.2
NEK3-205ENST00000610828 SH2B1Q9NRF2 756 aaPredicted RBP16.29■□□□□ 0.2
NEK3-205ENST00000610828 TBC1D2BQ9UPU7 963 aa16.29■□□□□ 0.2
NEK3-205ENST00000610828 PALLDQ8WX93 1383 aa16.29■□□□□ 0.2
NEK3-205ENST00000610828 GAS2L3Q86XJ1 694 aa16.29■□□□□ 0.2
NEK3-205ENST00000610828 DZIP3Q86Y13 1208 aaKnown RBP16.29■□□□□ 0.2
NEK3-205ENST00000610828 PANK2Q9BZ23 570 aa16.29■□□□□ 0.2
NEK3-205ENST00000610828 FBXO3Q9UK99 471 aa16.29■□□□□ 0.2
NEK3-205ENST00000610828 THRAP3Q9Y2W1 955 aaKnown RBP16.29■□□□□ 0.2
NEK3-205ENST00000610828 IL6STP40189 918 aaPredicted RBP16.28■□□□□ 0.2
NEK3-205ENST00000610828 GORABQ5T7V8 394 aa16.28■□□□□ 0.2
NEK3-205ENST00000610828 USPL1Q5W0Q7 1092 aa16.28■□□□□ 0.2
NEK3-205ENST00000610828 TCEANC2Q96MN5 208 aa16.28■□□□□ 0.2
NEK3-205ENST00000610828 TRMT112Q9UI30 125 aaKnown RBP16.28■□□□□ 0.2
NEK3-205ENST00000610828 AKAP2Q9Y2D5 859 aa16.28■□□□□ 0.2
NEK3-205ENST00000610828 CDHR2Q9BYE9 1310 aa16.28■□□□□ 0.2
NEK3-205ENST00000610828 ME3Q16798 604 aa16.28■□□□□ 0.2
NEK3-205ENST00000610828 SLFNL1Q499Z3 407 aa16.28■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 8.8 ms