RNA–Protein interactions for RNA: ENST00000601849.1

VRK3-224, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 653 nt, Biotype retained intron, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-224ENST00000601849 DLG5Q8TDM6 1919 aa12.48□□□□□ -0.41
VRK3-224ENST00000601849 SNED1Q8TER0 1413 aa12.47□□□□□ -0.41
VRK3-224ENST00000601849 ANXA1P04083 346 aa12.47□□□□□ -0.41
VRK3-224ENST00000601849 KIAA2012Q0VF49 1180 aa12.47□□□□□ -0.41
VRK3-224ENST00000601849 ANKRD13DQ6ZTN6 518 aa12.47□□□□□ -0.41
VRK3-224ENST00000601849 C3orf67Q6ZVT6 689 aa12.47□□□□□ -0.41
VRK3-224ENST00000601849 CHMP4AQ9BY43 222 aa12.47□□□□□ -0.41
VRK3-224ENST00000601849 DBF4Q9UBU7 674 aaPredicted RBP12.47□□□□□ -0.41
VRK3-224ENST00000601849 CA12O43570 354 aa12.46□□□□□ -0.41
VRK3-224ENST00000601849 HOXB7P09629 217 aa12.46□□□□□ -0.41
VRK3-224ENST00000601849 GMPSP49915 693 aaPredicted RBP12.46□□□□□ -0.41
VRK3-224ENST00000601849 WASHC4Q2M389 1173 aa12.46□□□□□ -0.41
VRK3-224ENST00000601849 PROSER3Q2NL68 480 aa12.46□□□□□ -0.41
VRK3-224ENST00000601849 HDGFL1Q5TGJ6 251 aa12.46□□□□□ -0.41
VRK3-224ENST00000601849 CDC37L1Q7L3B6 337 aa12.46□□□□□ -0.41
VRK3-224ENST00000601849 LRP10Q7Z4F1 713 aa12.46□□□□□ -0.41
VRK3-224ENST00000601849 PLBD2Q8NHP8 589 aa12.46□□□□□ -0.41
VRK3-224ENST00000601849 RUNDC1Q96C34 613 aa12.46□□□□□ -0.41
VRK3-224ENST00000601849 EYA3Q99504 573 aa12.46□□□□□ -0.41
VRK3-224ENST00000601849 TLL2Q9Y6L7 1015 aa12.46□□□□□ -0.41
VRK3-224ENST00000601849 G3V3G9 751 aa12.45□□□□□ -0.42
VRK3-224ENST00000601849 CHL1O00533 1208 aa12.45□□□□□ -0.42
VRK3-224ENST00000601849 RAD17O75943 681 aa12.45□□□□□ -0.42
VRK3-224ENST00000601849 CELF2O95319 508 aaKnown RBP12.45□□□□□ -0.42
VRK3-224ENST00000601849 HSPA8P11142 646 aaKnown RBP12.45□□□□□ -0.42
VRK3-224ENST00000601849 DCAF8Q5TAQ9 597 aa12.45□□□□□ -0.42
VRK3-224ENST00000601849 CST9Q5W186 159 aa12.45□□□□□ -0.42
VRK3-224ENST00000601849 CYP4F22Q6NT55 531 aa12.45□□□□□ -0.42
VRK3-224ENST00000601849 HHIPL1Q96JK4 782 aa12.45□□□□□ -0.42
VRK3-224ENST00000601849 HYPKQ9NX55 129 aa12.45□□□□□ -0.42
VRK3-224ENST00000601849 CNOT7Q9UIV1 285 aaKnown RBP12.45□□□□□ -0.42
VRK3-224ENST00000601849 NSFL1CQ9UNZ2 370 aaKnown RBP12.45□□□□□ -0.42
VRK3-224ENST00000601849 ADAMTSL1Q8N6G6 1762 aa12.45□□□□□ -0.42
VRK3-224ENST00000601849 MYBBP1AQ9BQG0 1328 aaKnown RBP12.44□□□□□ -0.42
VRK3-224ENST00000601849 C6orf229H3BNL8 230 aa12.44□□□□□ -0.42
VRK3-224ENST00000601849 TRAF5O00463 557 aa12.44□□□□□ -0.42
VRK3-224ENST00000601849 ZNF408Q9H9D4 720 aa12.44□□□□□ -0.42
VRK3-224ENST00000601849 CHPF2Q9P2E5 772 aa12.44□□□□□ -0.42
VRK3-224ENST00000601849 PGAP2Q9UHJ9 254 aa12.44□□□□□ -0.42
VRK3-224ENST00000601849 CALD1Q05682 793 aaKnown RBP12.43□□□□□ -0.42
VRK3-224ENST00000601849 RIC3Q7Z5B4 369 aa12.43□□□□□ -0.42
VRK3-224ENST00000601849 SAPCD2Q86UD0 394 aa12.43□□□□□ -0.42
VRK3-224ENST00000601849 CCDC146Q8IYE0 955 aa12.43□□□□□ -0.42
VRK3-224ENST00000601849 DPF2Q92785 391 aa12.43□□□□□ -0.42
VRK3-224ENST00000601849 ZC3H12CQ9C0D7 883 aaKnown RBP12.43□□□□□ -0.42
VRK3-224ENST00000601849 GOLGA2Q08379 1002 aa12.42□□□□□ -0.42
VRK3-224ENST00000601849 DDX10Q13206 875 aaKnown RBP12.42□□□□□ -0.42
VRK3-224ENST00000601849 SF3B3Q15393 1217 aaKnown RBP12.42□□□□□ -0.42
VRK3-224ENST00000601849 FAM89AQ96GI7 184 aa12.42□□□□□ -0.42
VRK3-224ENST00000601849 CFAP44Q96MT7 982 aa12.42□□□□□ -0.42
VRK3-224ENST00000601849 GLIS2Q9BZE0 524 aaPredicted RBP12.42□□□□□ -0.42
VRK3-224ENST00000601849 COL4A5P29400 1685 aa12.42□□□□□ -0.42
VRK3-224ENST00000601849 ATP5J2-PTCD1G3V325 749 aa12.41□□□□□ -0.42
VRK3-224ENST00000601849 RIMBP2O15034 1052 aa12.41□□□□□ -0.42
VRK3-224ENST00000601849 RPS12P25398 132 aaKnown RBP12.41□□□□□ -0.42
VRK3-224ENST00000601849 FMR1Q06787 632 aaKnown RBP eCLIP12.41□□□□□ -0.42
VRK3-224ENST00000601849 TRIM28Q13263 835 aaKnown RBP12.41□□□□□ -0.42
VRK3-224ENST00000601849 MICALL2Q8IY33 904 aa12.41□□□□□ -0.42
VRK3-224ENST00000601849 DCPSQ96C86 337 aaKnown RBP12.41□□□□□ -0.42
VRK3-224ENST00000601849 ABHD8Q96I13 439 aa12.41□□□□□ -0.42
VRK3-224ENST00000601849 IRS4O14654 1257 aaPredicted RBP12.4□□□□□ -0.42
VRK3-224ENST00000601849 DDX58O95786 925 aaKnown RBP12.4□□□□□ -0.42
VRK3-224ENST00000601849 BRPF1P55201 1214 aaPredicted RBP12.4□□□□□ -0.42
VRK3-224ENST00000601849 RPS8P62241 208 aaKnown RBP12.4□□□□□ -0.42
VRK3-224ENST00000601849 NOGQ13253 232 aa12.4□□□□□ -0.42
VRK3-224ENST00000601849 C2orf69Q8N8R5 385 aa12.4□□□□□ -0.42
VRK3-224ENST00000601849 ISCA1Q9BUE6 129 aa12.4□□□□□ -0.42
VRK3-224ENST00000601849 TRIM35Q9UPQ4 493 aa12.4□□□□□ -0.42
VRK3-224ENST00000601849 CCDC85CA6NKD9 419 aa12.39□□□□□ -0.43
VRK3-224ENST00000601849 AOC2O75106 756 aa12.39□□□□□ -0.43
VRK3-224ENST00000601849 KRT24Q2M2I5 525 aa12.39□□□□□ -0.43
VRK3-224ENST00000601849 RTL5Q5HYW3 569 aaPredicted RBP12.39□□□□□ -0.43
VRK3-224ENST00000601849 DUSP27Q5VZP5 1158 aa12.39□□□□□ -0.43
VRK3-224ENST00000601849 USP48Q86UV5 1035 aa12.39□□□□□ -0.43
VRK3-224ENST00000601849 DBNDD1Q9H9R9 158 aa12.39□□□□□ -0.43
VRK3-224ENST00000601849 ANKIB1Q9P2G1 1089 aa12.39□□□□□ -0.43
VRK3-224ENST00000601849 ADAMTS8Q9UP79 889 aa12.39□□□□□ -0.43
VRK3-224ENST00000601849 ZBTB12Q9Y330 459 aaPredicted RBP12.39□□□□□ -0.43
VRK3-224ENST00000601849 LTBP1Q14766 1721 aa12.39□□□□□ -0.43
VRK3-224ENST00000601849 ANKRD36CQ5JPF3 1778 aa12.38□□□□□ -0.43
VRK3-224ENST00000601849 YDJCA8MPS7 323 aa12.38□□□□□ -0.43
VRK3-224ENST00000601849 PSMD14O00487 310 aa12.38□□□□□ -0.43
VRK3-224ENST00000601849 ECE2O60344 883 aa12.38□□□□□ -0.43
VRK3-224ENST00000601849 HIRAP54198 1017 aaPredicted RBP12.38□□□□□ -0.43
VRK3-224ENST00000601849 HUNKP57058 714 aa12.38□□□□□ -0.43
VRK3-224ENST00000601849 GNAI1P63096 354 aa12.38□□□□□ -0.43
VRK3-224ENST00000601849 CCDC152Q4G0S7 254 aa12.38□□□□□ -0.43
VRK3-224ENST00000601849 RBM26Q5T8P6 1007 aaKnown RBP12.38□□□□□ -0.43
VRK3-224ENST00000601849 KRT26Q7Z3Y9 468 aa12.38□□□□□ -0.43
VRK3-224ENST00000601849 SLC51AQ86UW1 340 aa12.38□□□□□ -0.43
VRK3-224ENST00000601849 ZBTB38Q8NAP3 1195 aaPredicted RBP12.38□□□□□ -0.43
VRK3-224ENST00000601849 CELF1Q92879 486 aaKnown RBP12.38□□□□□ -0.43
VRK3-224ENST00000601849 CCDC102AQ96A19 550 aa12.38□□□□□ -0.43
VRK3-224ENST00000601849 TRPM7Q96QT4 1865 aa12.38□□□□□ -0.43
VRK3-224ENST00000601849 GPSM2P81274 684 aa12.37□□□□□ -0.43
VRK3-224ENST00000601849 DOK7Q18PE1 504 aa12.37□□□□□ -0.43
VRK3-224ENST00000601849 TBC1D10BQ4KMP7 808 aaPredicted RBP12.37□□□□□ -0.43
VRK3-224ENST00000601849 SAMD7Q7Z3H4 446 aa12.37□□□□□ -0.43
VRK3-224ENST00000601849 SULF1Q8IWU6 871 aa12.37□□□□□ -0.43
VRK3-224ENST00000601849 CCDC191Q8NCU4 936 aa12.37□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms