RNA–Protein interactions for RNA: ENST00000600733.5

SHKBP1-225, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5 BASIC

Gene SHKBP1, Length 2,284 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-225ENST00000600733 TTC5Q8N0Z6 440 aa24.09■■□□□ 1.45
SHKBP1-225ENST00000600733 FPGT-TNNI3KV9GXZ4 949 aa24.09■■□□□ 1.45
SHKBP1-225ENST00000600733 JCADQ9P266 1359 aa24.09■■□□□ 1.45
SHKBP1-225ENST00000600733 SNRPA1P09661 255 aaKnown RBP24.08■■□□□ 1.45
SHKBP1-225ENST00000600733 TERF1P54274 439 aa24.08■■□□□ 1.45
SHKBP1-225ENST00000600733 STK3Q13188 491 aa24.08■■□□□ 1.45
SHKBP1-225ENST00000600733 TTC6Q86TZ1 520 aa24.08■■□□□ 1.45
SHKBP1-225ENST00000600733 UBE2Q2Q8WVN8 375 aa24.08■■□□□ 1.45
SHKBP1-225ENST00000600733 ZNF830Q96NB3 372 aaPredicted RBP24.08■■□□□ 1.45
SHKBP1-225ENST00000600733 KIF1AQ12756 1690 aa24.08■■□□□ 1.45
SHKBP1-225ENST00000600733 AFDNP55196 1824 aaKnown RBP24.08■■□□□ 1.45
SHKBP1-225ENST00000600733 CSB-PGBD3P0DP91 1061 aa24.08■■□□□ 1.44
SHKBP1-225ENST00000600733 ANKRD1Q15327 319 aa24.08■■□□□ 1.44
SHKBP1-225ENST00000600733 ATP5JP18859 108 aa24.07■■□□□ 1.44
SHKBP1-225ENST00000600733 CABLES1Q8TDN4 633 aa24.07■■□□□ 1.44
SHKBP1-225ENST00000600733 CYP27B1O15528 508 aa24.07■■□□□ 1.44
SHKBP1-225ENST00000600733 C19orf44Q9H6X5 657 aa24.07■■□□□ 1.44
SHKBP1-225ENST00000600733 HMG20BQ9P0W2 317 aa24.07■■□□□ 1.44
SHKBP1-225ENST00000600733 CHMP3Q9Y3E7 222 aa24.07■■□□□ 1.44
SHKBP1-225ENST00000600733 KRT85P78386 507 aa24.06■■□□□ 1.44
SHKBP1-225ENST00000600733 DNAJC2Q99543 621 aaKnown RBP24.06■■□□□ 1.44
SHKBP1-225ENST00000600733 KIAA2012Q0VF49 1180 aa24.05■■□□□ 1.44
SHKBP1-225ENST00000600733 CHRNA2Q15822 529 aa24.05■■□□□ 1.44
SHKBP1-225ENST00000600733 CCDC129Q6ZRS4 1044 aa24.05■■□□□ 1.44
SHKBP1-225ENST00000600733 DBNDD2Q9BQY9 259 aa24.05■■□□□ 1.44
SHKBP1-225ENST00000600733 MST1RQ04912 1400 aa24.05■■□□□ 1.44
SHKBP1-225ENST00000600733 PDCP20941 246 aa24.05■■□□□ 1.44
SHKBP1-225ENST00000600733 TSGA10IPQ3SY00 556 aa24.05■■□□□ 1.44
SHKBP1-225ENST00000600733 SEC62Q99442 399 aaKnown RBP24.05■■□□□ 1.44
SHKBP1-225ENST00000600733 ALDH8A1Q9H2A2 487 aaPredicted RBP24.05■■□□□ 1.44
SHKBP1-225ENST00000600733 A0A087WZG4 1122 aa24.04■■□□□ 1.44
SHKBP1-225ENST00000600733 KDM4AO75164 1064 aa24.04■■□□□ 1.44
SHKBP1-225ENST00000600733 PLCB2Q00722 1185 aa24.04■■□□□ 1.44
SHKBP1-225ENST00000600733 RABL6Q3YEC7 729 aaPredicted RBP24.04■■□□□ 1.44
SHKBP1-225ENST00000600733 USPL1Q5W0Q7 1092 aa24.04■■□□□ 1.44
SHKBP1-225ENST00000600733 DCAF5Q96JK2 942 aa24.04■■□□□ 1.44
SHKBP1-225ENST00000600733 FMNL2Q96PY5 1086 aa24.04■■□□□ 1.44
SHKBP1-225ENST00000600733 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP24.04■■□□□ 1.44
SHKBP1-225ENST00000600733 ZNF609O15014 1411 aa24.03■■□□□ 1.44
SHKBP1-225ENST00000600733 ARFGEF2Q9Y6D5 1785 aa24.03■■□□□ 1.44
SHKBP1-225ENST00000600733 CCDC9Q9Y3X0 531 aaKnown RBP24.03■■□□□ 1.44
SHKBP1-225ENST00000600733 ADAMTSL3P82987 1691 aa24.03■■□□□ 1.44
SHKBP1-225ENST00000600733 TTC12Q9H892 705 aaPredicted RBP24.03■■□□□ 1.44
SHKBP1-225ENST00000600733 LIG1P18858 919 aa24.02■■□□□ 1.44
SHKBP1-225ENST00000600733 DDX46Q7L014 1031 aaKnown RBP24.02■■□□□ 1.44
SHKBP1-225ENST00000600733 UQCRHLA0A096LP55 91 aa24.01■■□□□ 1.43
SHKBP1-225ENST00000600733 AP5Z1O43299 807 aa24.01■■□□□ 1.43
SHKBP1-225ENST00000600733 UQCRHP07919 91 aa24.01■■□□□ 1.43
SHKBP1-225ENST00000600733 TFIP11Q9UBB9 837 aaKnown RBP24.01■■□□□ 1.43
SHKBP1-225ENST00000600733 COL18A1P39060 1754 aa24.01■■□□□ 1.43
SHKBP1-225ENST00000600733 JAK2O60674 1132 aa24.01■■□□□ 1.43
SHKBP1-225ENST00000600733 CAMK4Q16566 473 aa24■■□□□ 1.43
SHKBP1-225ENST00000600733 NEK1Q96PY6 1258 aa24■■□□□ 1.43
SHKBP1-225ENST00000600733 ELP1O95163 1332 aa24■■□□□ 1.43
SHKBP1-225ENST00000600733 PDIA4P13667 645 aaKnown RBP24■■□□□ 1.43
SHKBP1-225ENST00000600733 CASP7P55210 303 aa24■■□□□ 1.43
SHKBP1-225ENST00000600733 RBM10P98175 930 aaKnown RBP24■■□□□ 1.43
SHKBP1-225ENST00000600733 LMBR1LQ6UX01 489 aa24■■□□□ 1.43
SHKBP1-225ENST00000600733 HAUS7Q99871 368 aa24■■□□□ 1.43
SHKBP1-225ENST00000600733 CYP21A2P08686 494 aa23.99■■□□□ 1.43
SHKBP1-225ENST00000600733 CABP4P57796 275 aa23.99■■□□□ 1.43
SHKBP1-225ENST00000600733 KRT32Q14532 448 aa23.99■■□□□ 1.43
SHKBP1-225ENST00000600733 CCDC192P0DO97 292 aa23.99■■□□□ 1.43
SHKBP1-225ENST00000600733 GTF3C6Q969F1 213 aa23.99■■□□□ 1.43
SHKBP1-225ENST00000600733 Q6ZUG5 572 aa23.98■■□□□ 1.43
SHKBP1-225ENST00000600733 C17orf53Q8N3J3 647 aaPredicted RBP23.98■■□□□ 1.43
SHKBP1-225ENST00000600733 PLBD2Q8NHP8 589 aa23.98■■□□□ 1.43
SHKBP1-225ENST00000600733 NUP62CLQ9H1M0 184 aa23.98■■□□□ 1.43
SHKBP1-225ENST00000600733 ATF3P18847 181 aa23.98■■□□□ 1.43
SHKBP1-225ENST00000600733 MCMDC2Q4G0Z9 681 aa23.98■■□□□ 1.43
SHKBP1-225ENST00000600733 SPATA32Q96LK8 384 aa23.98■■□□□ 1.43
SHKBP1-225ENST00000600733 SLFNL1Q499Z3 407 aa23.97■■□□□ 1.43
SHKBP1-225ENST00000600733 PIBF1Q8WXW3 757 aa23.97■■□□□ 1.43
SHKBP1-225ENST00000600733 LRRC2Q9BYS8 371 aa23.97■■□□□ 1.43
SHKBP1-225ENST00000600733 MAP3K11Q16584 847 aa23.96■■□□□ 1.43
SHKBP1-225ENST00000600733 KLHL34Q8N239 644 aa23.96■■□□□ 1.43
SHKBP1-225ENST00000600733 SCAND2PQ9GZW5 306 aaPredicted RBP23.96■■□□□ 1.43
SHKBP1-225ENST00000600733 DACT1Q9NYF0 836 aa23.96■■□□□ 1.43
SHKBP1-225ENST00000600733 U3KPZ7 1027 aaPredicted RBP23.96■■□□□ 1.43
SHKBP1-225ENST00000600733 HSP90B1P14625 803 aaKnown RBP23.96■■□□□ 1.43
SHKBP1-225ENST00000600733 SASS6Q6UVJ0 657 aa23.96■■□□□ 1.43
SHKBP1-225ENST00000600733 LEO1Q8WVC0 666 aaPredicted RBP23.96■■□□□ 1.43
SHKBP1-225ENST00000600733 RFX7Q2KHR2 1363 aa23.96■■□□□ 1.43
SHKBP1-225ENST00000600733 GLI3P10071 1580 aa23.95■■□□□ 1.43
SHKBP1-225ENST00000600733 NBPF26B4DH59 902 aa23.95■■□□□ 1.43
SHKBP1-225ENST00000600733 NBPF14Q5TI25 921 aa23.95■■□□□ 1.43
SHKBP1-225ENST00000600733 NBPF10Q6P3W6 841 aaKnown RBP23.95■■□□□ 1.43
SHKBP1-225ENST00000600733 CKAP2LQ8IYA6 745 aa23.95■■□□□ 1.43
SHKBP1-225ENST00000600733 NBPF15Q8N660 670 aa23.95■■□□□ 1.43
SHKBP1-225ENST00000600733 FOXO4P98177 505 aa23.95■■□□□ 1.42
SHKBP1-225ENST00000600733 KBTBD3Q8NAB2 608 aa23.95■■□□□ 1.42
SHKBP1-225ENST00000600733 BRF1Q92994 677 aa23.95■■□□□ 1.42
SHKBP1-225ENST00000600733 DDX11Q96FC9 970 aa23.95■■□□□ 1.42
SHKBP1-225ENST00000600733 NEUROD6Q96NK8 337 aa23.95■■□□□ 1.42
SHKBP1-225ENST00000600733 PKD1L3Q7Z443 1732 aa23.94■■□□□ 1.42
SHKBP1-225ENST00000600733 GOLGA6L4A6NEF3 574 aa23.94■■□□□ 1.42
SHKBP1-225ENST00000600733 DNTTIP2Q5QJE6 756 aaKnown RBP23.94■■□□□ 1.42
SHKBP1-225ENST00000600733 STOX1Q6ZVD7 989 aa23.94■■□□□ 1.42
SHKBP1-225ENST00000600733 FAM13BQ9NYF5 915 aa23.94■■□□□ 1.42
SHKBP1-225ENST00000600733 NOLC1Q14978 699 aaKnown RBP eCLIP23.94■■□□□ 1.42
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms