RNA–Protein interactions for RNA: ENST00000600689.1

UPF1-210, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,084 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-210ENST00000600689 ZSCAN31Q96LW9 406 aaPredicted RBP21.68■■□□□ 1.06
UPF1-210ENST00000600689 FTOQ9C0B1 505 aaKnown RBP eCLIP21.68■■□□□ 1.06
UPF1-210ENST00000600689 SH2B1Q9NRF2 756 aaPredicted RBP21.68■■□□□ 1.06
UPF1-210ENST00000600689 HSP90B1P14625 803 aaKnown RBP21.68■■□□□ 1.06
UPF1-210ENST00000600689 KRT28Q7Z3Y7 464 aa21.68■■□□□ 1.06
UPF1-210ENST00000600689 BLOC1S2Q6QNY1 142 aa21.67■■□□□ 1.06
UPF1-210ENST00000600689 KLHDC4Q8TBB5 520 aa21.67■■□□□ 1.06
UPF1-210ENST00000600689 ANKRD24Q8TF21 1146 aa21.67■■□□□ 1.06
UPF1-210ENST00000600689 AOX1Q06278 1338 aa21.67■■□□□ 1.06
UPF1-210ENST00000600689 GOLGA6L19H0YKK7 550 aa21.67■■□□□ 1.06
UPF1-210ENST00000600689 EIF4A1P60842 406 aaKnown RBP21.67■■□□□ 1.06
UPF1-210ENST00000600689 CWF19L2Q2TBE0 894 aaKnown RBP21.67■■□□□ 1.06
UPF1-210ENST00000600689 LEO1Q8WVC0 666 aaPredicted RBP21.67■■□□□ 1.06
UPF1-210ENST00000600689 ECHDC1Q9NTX5 307 aa21.67■■□□□ 1.06
UPF1-210ENST00000600689 CCDC171Q6TFL3 1326 aa21.67■■□□□ 1.06
UPF1-210ENST00000600689 CHGBP05060 677 aa21.66■■□□□ 1.06
UPF1-210ENST00000600689 ZC3H6P61129 1189 aaKnown RBP21.66■■□□□ 1.06
UPF1-210ENST00000600689 POLA2Q14181 598 aa21.66■■□□□ 1.06
UPF1-210ENST00000600689 CEP135Q66GS9 1140 aa21.66■■□□□ 1.06
UPF1-210ENST00000600689 DNAAF4Q8WXU2 420 aa21.66■■□□□ 1.06
UPF1-210ENST00000600689 FSD1Q9BTV5 496 aa21.66■■□□□ 1.06
UPF1-210ENST00000600689 SMTNL1A8MU46 457 aa21.66■■□□□ 1.06
UPF1-210ENST00000600689 PGBD1Q96JS3 809 aa21.66■■□□□ 1.06
UPF1-210ENST00000600689 ST7Q9NRC1 585 aa21.66■■□□□ 1.06
UPF1-210ENST00000600689 TLR7Q9NYK1 1049 aaKnown RBP21.66■■□□□ 1.06
UPF1-210ENST00000600689 CTNNA3Q9UI47 895 aa21.66■■□□□ 1.06
UPF1-210ENST00000600689 PXDNQ92626 1479 aa21.66■■□□□ 1.06
UPF1-210ENST00000600689 H3BQV1 296 aa21.65■■□□□ 1.06
UPF1-210ENST00000600689 KIF20AO95235 890 aa21.65■■□□□ 1.06
UPF1-210ENST00000600689 TEFQ10587 303 aa21.65■■□□□ 1.06
UPF1-210ENST00000600689 AIMP1Q12904 312 aaKnown RBP21.65■■□□□ 1.06
UPF1-210ENST00000600689 IFFO2Q5TF58 517 aa21.65■■□□□ 1.06
UPF1-210ENST00000600689 ZNF215Q9UL58 517 aaPredicted RBP21.65■■□□□ 1.06
UPF1-210ENST00000600689 A0A0D9SFI3 127 aa21.65■■□□□ 1.06
UPF1-210ENST00000600689 BTBD11A6QL63 1104 aa21.65■■□□□ 1.06
UPF1-210ENST00000600689 SLC27A2O14975 620 aa21.65■■□□□ 1.06
UPF1-210ENST00000600689 FGD1P98174 961 aa21.65■■□□□ 1.06
UPF1-210ENST00000600689 OGFRQ9NZT2 677 aa21.65■■□□□ 1.06
UPF1-210ENST00000600689 NECTIN1Q15223 517 aa21.64■■□□□ 1.05
UPF1-210ENST00000600689 C11orf57Q6ZUT1 292 aaPredicted RBP21.64■■□□□ 1.05
UPF1-210ENST00000600689 GUCY1B3Q02153 619 aa21.64■■□□□ 1.05
UPF1-210ENST00000600689 BABAM1Q9NWV8 329 aa21.64■■□□□ 1.05
UPF1-210ENST00000600689 BECN2A8MW95 431 aa21.63■■□□□ 1.05
UPF1-210ENST00000600689 AKAP4Q5JQC9 854 aa21.63■■□□□ 1.05
UPF1-210ENST00000600689 PRAMEF22A3QJZ6 481 aa21.63■■□□□ 1.05
UPF1-210ENST00000600689 IL17RAQ96F46 866 aa21.63■■□□□ 1.05
UPF1-210ENST00000600689 PLEKHO1Q53GL0 409 aaPredicted RBP21.62■■□□□ 1.05
UPF1-210ENST00000600689 BRF1Q92994 677 aa21.62■■□□□ 1.05
UPF1-210ENST00000600689 TRERF1Q96PN7 1200 aa21.62■■□□□ 1.05
UPF1-210ENST00000600689 SKILP12757 684 aa21.62■■□□□ 1.05
UPF1-210ENST00000600689 ELF2Q15723 593 aa21.62■■□□□ 1.05
UPF1-210ENST00000600689 CLSTN2Q9H4D0 955 aa21.62■■□□□ 1.05
UPF1-210ENST00000600689 BEND3Q5T5X7 828 aa21.61■■□□□ 1.05
UPF1-210ENST00000600689 GPATCH3Q96I76 525 aa21.61■■□□□ 1.05
UPF1-210ENST00000600689 SCAND2PQ9GZW5 306 aaPredicted RBP21.61■■□□□ 1.05
UPF1-210ENST00000600689 ZNF589Q86UQ0 364 aaPredicted RBP21.61■■□□□ 1.05
UPF1-210ENST00000600689 PLA2G4DQ86XP0 818 aa21.61■■□□□ 1.05
UPF1-210ENST00000600689 FMNL2Q96PY5 1086 aa21.61■■□□□ 1.05
UPF1-210ENST00000600689 C1orf167Q5SNV9 1468 aa21.61■■□□□ 1.05
UPF1-210ENST00000600689 PDCP20941 246 aa21.6■■□□□ 1.05
UPF1-210ENST00000600689 PTPN14Q15678 1187 aa21.6■■□□□ 1.05
UPF1-210ENST00000600689 GORABQ5T7V8 394 aa21.6■■□□□ 1.05
UPF1-210ENST00000600689 FEZ1Q99689 392 aa21.6■■□□□ 1.05
UPF1-210ENST00000600689 RNMTO43148 476 aaKnown RBP21.6■■□□□ 1.05
UPF1-210ENST00000600689 C1orf141Q5JVX7 400 aa21.6■■□□□ 1.05
UPF1-210ENST00000600689 C19orf44Q9H6X5 657 aa21.6■■□□□ 1.05
UPF1-210ENST00000600689 DDX19AQ9NUU7 478 aaKnown RBP21.6■■□□□ 1.05
UPF1-210ENST00000600689 CCDC129Q6ZRS4 1044 aa21.59■■□□□ 1.05
UPF1-210ENST00000600689 EAF2Q96CJ1 260 aaPredicted RBP21.59■■□□□ 1.05
UPF1-210ENST00000600689 MAP3K2Q9Y2U5 619 aa21.59■■□□□ 1.05
UPF1-210ENST00000600689 NPHP3Q7Z494 1330 aa21.59■■□□□ 1.05
UPF1-210ENST00000600689 HSP90AB4PQ58FF6 505 aa21.59■■□□□ 1.05
UPF1-210ENST00000600689 MED1Q15648 1581 aaPredicted RBP21.59■■□□□ 1.05
UPF1-210ENST00000600689 RGPD5Q99666 1765 aa21.59■■□□□ 1.05
UPF1-210ENST00000600689 PROSER3Q2NL68 480 aa21.59■■□□□ 1.05
UPF1-210ENST00000600689 KMT5BQ4FZB7 885 aa21.59■■□□□ 1.05
UPF1-210ENST00000600689 CABLES1Q8TDN4 633 aa21.59■■□□□ 1.05
UPF1-210ENST00000600689 ZBTB9Q96C00 473 aa21.59■■□□□ 1.05
UPF1-210ENST00000600689 EVI5LQ96CN4 794 aa21.59■■□□□ 1.05
UPF1-210ENST00000600689 CACNA1FO60840 1977 aa21.59■■□□□ 1.05
UPF1-210ENST00000600689 SLIT3O75094 1523 aa21.58■■□□□ 1.05
UPF1-210ENST00000600689 PSMA5P28066 241 aa21.58■■□□□ 1.05
UPF1-210ENST00000600689 TOB2Q14106 344 aaPredicted RBP21.58■■□□□ 1.05
UPF1-210ENST00000600689 BBXQ8WY36 941 aaPredicted RBP21.58■■□□□ 1.05
UPF1-210ENST00000600689 CCDC69A6NI79 296 aa21.58■■□□□ 1.04
UPF1-210ENST00000600689 LRRC8AQ8IWT6 810 aa21.58■■□□□ 1.04
UPF1-210ENST00000600689 TDRD7Q8NHU6 1098 aaKnown RBP21.57■■□□□ 1.04
UPF1-210ENST00000600689 KIF18AQ8NI77 898 aa21.57■■□□□ 1.04
UPF1-210ENST00000600689 DDX41Q9UJV9 622 aaKnown RBP21.57■■□□□ 1.04
UPF1-210ENST00000600689 TRPM3Q9HCF6 1732 aaPredicted RBP21.57■■□□□ 1.04
UPF1-210ENST00000600689 PHRF1Q9P1Y6 1649 aaKnown RBP21.57■■□□□ 1.04
UPF1-210ENST00000600689 TTC41PQ6P2S7 1318 aa21.57■■□□□ 1.04
UPF1-210ENST00000600689 EPB41L2O43491 1005 aaKnown RBP21.57■■□□□ 1.04
UPF1-210ENST00000600689 G3BP1Q13283 466 aaKnown RBP eCLIP21.57■■□□□ 1.047e-7■■□□□ 11.8
UPF1-210ENST00000600689 AMOTQ4VCS5 1084 aa21.57■■□□□ 1.04
UPF1-210ENST00000600689 PAXBP1Q9Y5B6 917 aa21.57■■□□□ 1.04
UPF1-210ENST00000600689 VGLL3A8MV65 326 aa21.56■■□□□ 1.04
UPF1-210ENST00000600689 RPS6KB1P23443 525 aa21.56■■□□□ 1.04
UPF1-210ENST00000600689 CCT2P78371 535 aaKnown RBP21.56■■□□□ 1.04
UPF1-210ENST00000600689 MAP4K1Q92918 833 aa21.56■■□□□ 1.04
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms