RNA–Protein interactions for RNA: ENST00000599538.5

VRK3-217, Transcript of vaccinia related kinase 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene VRK3, Length 2,126 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-217ENST00000599538 DDX46Q7L014 1031 aaKnown RBP17.46■□□□□ 0.39
VRK3-217ENST00000599538 CDCA7Q9BWT1 371 aaPredicted RBP17.46■□□□□ 0.39
VRK3-217ENST00000599538 CWC22Q9HCG8 908 aaKnown RBP17.46■□□□□ 0.39
VRK3-217ENST00000599538 RBM8AQ9Y5S9 174 aaKnown RBP17.46■□□□□ 0.39
VRK3-217ENST00000599538 DDX11L8A8MPP1 907 aa17.45■□□□□ 0.38
VRK3-217ENST00000599538 CHAMP1Q96JM3 812 aa17.45■□□□□ 0.38
VRK3-217ENST00000599538 GBP4Q96PP9 640 aa17.45■□□□□ 0.38
VRK3-217ENST00000599538 HAUS7Q99871 368 aa17.45■□□□□ 0.38
VRK3-217ENST00000599538 SNRKQ9NRH2 765 aa17.45■□□□□ 0.38
VRK3-217ENST00000599538 SLIT2O94813 1529 aa17.45■□□□□ 0.38
VRK3-217ENST00000599538 HIP1O00291 1037 aa17.45■□□□□ 0.38
VRK3-217ENST00000599538 CCDC57Q2TAC2 916 aa17.45■□□□□ 0.38
VRK3-217ENST00000599538 SLFNL1Q499Z3 407 aa17.45■□□□□ 0.38
VRK3-217ENST00000599538 DZIP3Q86Y13 1208 aaKnown RBP17.45■□□□□ 0.38
VRK3-217ENST00000599538 MAP4K1Q92918 833 aa17.45■□□□□ 0.38
VRK3-217ENST00000599538 TAF6LQ9Y6J9 622 aa17.45■□□□□ 0.38
VRK3-217ENST00000599538 MED23Q9ULK4 1368 aa17.45■□□□□ 0.38
VRK3-217ENST00000599538 KCNQ2O43526 872 aa17.44■□□□□ 0.38
VRK3-217ENST00000599538 BAG4O95429 457 aaKnown RBP17.44■□□□□ 0.38
VRK3-217ENST00000599538 CSF1RP07333 972 aa17.44■□□□□ 0.38
VRK3-217ENST00000599538 CASTP20810 708 aaKnown RBP17.44■□□□□ 0.38
VRK3-217ENST00000599538 AK2P54819 239 aa17.44■□□□□ 0.38
VRK3-217ENST00000599538 SEC62Q99442 399 aaKnown RBP17.44■□□□□ 0.38
VRK3-217ENST00000599538 NUP98P52948 1817 aa17.44■□□□□ 0.38
VRK3-217ENST00000599538 ZNF609O15014 1411 aa17.44■□□□□ 0.38
VRK3-217ENST00000599538 UBN2Q6ZU65 1347 aa17.44■□□□□ 0.38
VRK3-217ENST00000599538 A0A1B0GUL7 405 aa17.44■□□□□ 0.38
VRK3-217ENST00000599538 NUCB2P80303 420 aa17.44■□□□□ 0.38
VRK3-217ENST00000599538 INTS5Q6P9B9 1019 aaKnown RBP17.44■□□□□ 0.38
VRK3-217ENST00000599538 CLEC17AQ6ZS10 378 aa17.44■□□□□ 0.38
VRK3-217ENST00000599538 KCNB2Q92953 911 aa17.44■□□□□ 0.38
VRK3-217ENST00000599538 PLA2G12BQ9BX93 195 aa17.44■□□□□ 0.38
VRK3-217ENST00000599538 CIAO1O76071 339 aa17.43■□□□□ 0.38
VRK3-217ENST00000599538 IL6STP40189 918 aaPredicted RBP17.43■□□□□ 0.38
VRK3-217ENST00000599538 ITPK1Q13572 414 aa17.43■□□□□ 0.38
VRK3-217ENST00000599538 CREB3L3Q68CJ9 461 aa17.43■□□□□ 0.38
VRK3-217ENST00000599538 CCDC129Q6ZRS4 1044 aa17.43■□□□□ 0.38
VRK3-217ENST00000599538 RUFY3Q7L099 469 aa17.43■□□□□ 0.38
VRK3-217ENST00000599538 GPR108Q9NPR9 543 aa17.43■□□□□ 0.38
VRK3-217ENST00000599538 ATP6V1AP38606 617 aa17.42■□□□□ 0.38
VRK3-217ENST00000599538 FOXD4L5Q5VV16 416 aaPredicted RBP17.42■□□□□ 0.38
VRK3-217ENST00000599538 FOXD4L4Q8WXT5 416 aaPredicted RBP17.42■□□□□ 0.38
VRK3-217ENST00000599538 JAKMIP1Q96N16 626 aaKnown RBP17.42■□□□□ 0.38
VRK3-217ENST00000599538 LOC102724428A0A0B4J2F2 783 aa17.42■□□□□ 0.38
VRK3-217ENST00000599538 DTNBO60941 627 aa17.42■□□□□ 0.38
VRK3-217ENST00000599538 SIK1P57059 783 aa17.42■□□□□ 0.38
VRK3-217ENST00000599538 FAM98CQ17RN3 349 aaKnown RBP17.42■□□□□ 0.38
VRK3-217ENST00000599538 TTLL11Q8NHH1 800 aa17.42■□□□□ 0.38
VRK3-217ENST00000599538 GREM2Q9H772 168 aa17.42■□□□□ 0.38
VRK3-217ENST00000599538 UBAP1LF5GYI3 381 aa17.41■□□□□ 0.38
VRK3-217ENST00000599538 GOLIM4O00461 696 aa17.41■□□□□ 0.38
VRK3-217ENST00000599538 SLC27A2O14975 620 aa17.41■□□□□ 0.38
VRK3-217ENST00000599538 ADORA1P30542 326 aa17.41■□□□□ 0.38
VRK3-217ENST00000599538 CRKLP46109 303 aaKnown RBP17.41■□□□□ 0.38
VRK3-217ENST00000599538 KCNJ4P48050 445 aa17.41■□□□□ 0.38
VRK3-217ENST00000599538 EIF5P55010 431 aaKnown RBP17.41■□□□□ 0.38
VRK3-217ENST00000599538 BARGINQ6ZT62 677 aa17.41■□□□□ 0.38
VRK3-217ENST00000599538 ANKRD36CQ5JPF3 1778 aa17.41■□□□□ 0.38
VRK3-217ENST00000599538 CDHR2Q9BYE9 1310 aa17.41■□□□□ 0.38
VRK3-217ENST00000599538 MYH14Q7Z406 1995 aaKnown RBP17.41■□□□□ 0.38
VRK3-217ENST00000599538 NWD2Q9ULI1 1742 aa17.41■□□□□ 0.38
VRK3-217ENST00000599538 TAF5LO75529 589 aa17.41■□□□□ 0.38
VRK3-217ENST00000599538 LARGE1O95461 756 aa17.41■□□□□ 0.38
VRK3-217ENST00000599538 IFIT5Q13325 482 aaKnown RBP17.41■□□□□ 0.38
VRK3-217ENST00000599538 C8orf37Q96NL8 207 aa17.41■□□□□ 0.38
VRK3-217ENST00000599538 CEP126Q9P2H0 1117 aa17.41■□□□□ 0.38
VRK3-217ENST00000599538 TRMT112Q9UI30 125 aaKnown RBP17.41■□□□□ 0.38
VRK3-217ENST00000599538 IRS4O14654 1257 aaPredicted RBP17.4■□□□□ 0.38
VRK3-217ENST00000599538 HSP90AB3PQ58FF7 597 aa17.4■□□□□ 0.38
VRK3-217ENST00000599538 KBTBD3Q8NAB2 608 aa17.4■□□□□ 0.38
VRK3-217ENST00000599538 ZSWIM6Q9HCJ5 1215 aa17.4■□□□□ 0.38
VRK3-217ENST00000599538 ERVV-1B6SEH8 477 aa17.39■□□□□ 0.38
VRK3-217ENST00000599538 ITGA6P23229 1130 aa17.39■□□□□ 0.38
VRK3-217ENST00000599538 MCTP1Q6DN14 999 aa17.39■□□□□ 0.38
VRK3-217ENST00000599538 ZNF34Q8IZ26 560 aa17.39■□□□□ 0.38
VRK3-217ENST00000599538 INTS4Q96HW7 963 aaKnown RBP17.39■□□□□ 0.38
VRK3-217ENST00000599538 CCDC87Q9NVE4 849 aa17.39■□□□□ 0.38
VRK3-217ENST00000599538 PAG1Q9NWQ8 432 aa17.39■□□□□ 0.38
VRK3-217ENST00000599538 JCADQ9P266 1359 aa17.39■□□□□ 0.37
VRK3-217ENST00000599538 CTSWP56202 376 aa17.39■□□□□ 0.37
VRK3-217ENST00000599538 TAF7LQ5H9L4 462 aa17.39■□□□□ 0.37
VRK3-217ENST00000599538 FAM177BA6PVY3 158 aa17.38■□□□□ 0.37
VRK3-217ENST00000599538 PTF1AQ7RTS3 328 aa17.38■□□□□ 0.37
VRK3-217ENST00000599538 TCEANC2Q96MN5 208 aa17.38■□□□□ 0.37
VRK3-217ENST00000599538 PALLDQ8WX93 1383 aa17.38■□□□□ 0.37
VRK3-217ENST00000599538 IFIT1P09914 478 aaKnown RBP17.38■□□□□ 0.37
VRK3-217ENST00000599538 ZKSCAN1P17029 563 aaPredicted RBP17.38■□□□□ 0.37
VRK3-217ENST00000599538 KCNQ4P56696 695 aa17.38■□□□□ 0.37
VRK3-217ENST00000599538 XAGE2Q96GT9 111 aa17.38■□□□□ 0.37
VRK3-217ENST00000599538 NGLY1Q96IV0 654 aa17.38■□□□□ 0.37
VRK3-217ENST00000599538 TM6SF1Q9BZW5 370 aa17.38■□□□□ 0.37
VRK3-217ENST00000599538 PDRG1Q9NUG6 133 aa17.38■□□□□ 0.37
VRK3-217ENST00000599538 LIMCH1Q9UPQ0 1083 aa17.38■□□□□ 0.37
VRK3-217ENST00000599538 RIPOR2Q9Y4F9 1068 aa17.38■□□□□ 0.37
VRK3-217ENST00000599538 BCL9LQ86UU0 1499 aa17.37■□□□□ 0.37
VRK3-217ENST00000599538 RIC1Q4ADV7 1423 aa17.37■□□□□ 0.37
VRK3-217ENST00000599538 SCARF1Q14162 830 aa17.37■□□□□ 0.37
VRK3-217ENST00000599538 SUSD4Q5VX71 490 aa17.37■□□□□ 0.37
VRK3-217ENST00000599538 RPAP1Q9BWH6 1393 aaPredicted RBP17.37■□□□□ 0.37
VRK3-217ENST00000599538 LDHAL6AQ6ZMR3 332 aa17.36■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms