RNA–Protein interactions for RNA: ENST00000598558.5

SHKBP1-217, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 579 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-217ENST00000598558 GRM8O00222 908 aa18.01■□□□□ 0.47
SHKBP1-217ENST00000598558 TRIM27P14373 513 aa18.01■□□□□ 0.47
SHKBP1-217ENST00000598558 CTSWP56202 376 aa18.01■□□□□ 0.47
SHKBP1-217ENST00000598558 DDX46Q7L014 1031 aaKnown RBP18.01■□□□□ 0.47
SHKBP1-217ENST00000598558 PLA2G12BQ9BX93 195 aa18.01■□□□□ 0.47
SHKBP1-217ENST00000598558 API5Q9BZZ5 524 aaKnown RBP18.01■□□□□ 0.47
SHKBP1-217ENST00000598558 USP44Q9H0E7 712 aa18.01■□□□□ 0.47
SHKBP1-217ENST00000598558 GRAPQ13588 217 aa18■□□□□ 0.47
SHKBP1-217ENST00000598558 GRAPLQ8TC17 118 aaPredicted RBP18■□□□□ 0.47
SHKBP1-217ENST00000598558 SUCLG2Q96I99 432 aa18■□□□□ 0.47
SHKBP1-217ENST00000598558 UTYO14607 1347 aa17.99■□□□□ 0.47
SHKBP1-217ENST00000598558 KIF16BQ96L93 1317 aa17.99■□□□□ 0.47
SHKBP1-217ENST00000598558 SNED1Q8TER0 1413 aa17.99■□□□□ 0.47
SHKBP1-217ENST00000598558 PPEF1O14829 653 aaPredicted RBP17.99■□□□□ 0.47
SHKBP1-217ENST00000598558 CSF1RP07333 972 aa17.99■□□□□ 0.47
SHKBP1-217ENST00000598558 ATF7IPQ6VMQ6 1270 aa17.99■□□□□ 0.47
SHKBP1-217ENST00000598558 GREM2Q9H772 168 aa17.99■□□□□ 0.47
SHKBP1-217ENST00000598558 C9orf78Q9NZ63 289 aaPredicted RBP17.99■□□□□ 0.47
SHKBP1-217ENST00000598558 BBOX1O75936 387 aa17.98■□□□□ 0.47
SHKBP1-217ENST00000598558 CLUAP1Q96AJ1 413 aa17.98■□□□□ 0.47
SHKBP1-217ENST00000598558 ATP6V0A2Q9Y487 856 aa17.98■□□□□ 0.47
SHKBP1-217ENST00000598558 LAMB2P55268 1798 aa17.98■□□□□ 0.47
SHKBP1-217ENST00000598558 CCDC152Q4G0S7 254 aa17.97■□□□□ 0.47
SHKBP1-217ENST00000598558 C9orf131Q5VYM1 1079 aa17.97■□□□□ 0.47
SHKBP1-217ENST00000598558 ARFGEF1Q9Y6D6 1849 aa17.97■□□□□ 0.47
SHKBP1-217ENST00000598558 IPO8O15397 1037 aaKnown RBP17.96■□□□□ 0.47
SHKBP1-217ENST00000598558 RLBP1P12271 317 aa17.96■□□□□ 0.47
SHKBP1-217ENST00000598558 HSP90B1P14625 803 aaKnown RBP17.96■□□□□ 0.47
SHKBP1-217ENST00000598558 YY1P25490 414 aa17.96■□□□□ 0.47
SHKBP1-217ENST00000598558 CCT4P50991 539 aaKnown RBP17.96■□□□□ 0.47
SHKBP1-217ENST00000598558 RPS8P62241 208 aaKnown RBP17.96■□□□□ 0.47
SHKBP1-217ENST00000598558 CCDC93Q567U6 631 aa17.96■□□□□ 0.47
SHKBP1-217ENST00000598558 ZKSCAN2Q63HK3 967 aa17.96■□□□□ 0.47
SHKBP1-217ENST00000598558 INTS3Q68E01 1043 aaKnown RBP17.96■□□□□ 0.47
SHKBP1-217ENST00000598558 SP8Q8IXZ3 490 aa17.96■□□□□ 0.47
SHKBP1-217ENST00000598558 RCAN3Q9UKA8 241 aa17.96■□□□□ 0.47
SHKBP1-217ENST00000598558 FAM161AQ3B820 660 aa17.95■□□□□ 0.46
SHKBP1-217ENST00000598558 LMBR1LQ6UX01 489 aa17.95■□□□□ 0.46
SHKBP1-217ENST00000598558 PLIN1O60240 522 aa17.94■□□□□ 0.46
SHKBP1-217ENST00000598558 TMEM57Q8N5G2 664 aa17.94■□□□□ 0.46
SHKBP1-217ENST00000598558 ANKRD44Q8N8A2 993 aa17.94■□□□□ 0.46
SHKBP1-217ENST00000598558 MEIS3Q99687 375 aa17.94■□□□□ 0.46
SHKBP1-217ENST00000598558 ZNF277Q9NRM2 450 aaPredicted RBP17.94■□□□□ 0.46
SHKBP1-217ENST00000598558 LTBP3Q9NS15 1303 aa17.94■□□□□ 0.46
SHKBP1-217ENST00000598558 RTL9Q8NET4 1388 aa17.93■□□□□ 0.46
SHKBP1-217ENST00000598558 TAF1P21675 1872 aa17.93■□□□□ 0.46
SHKBP1-217ENST00000598558 ITGA6P23229 1130 aa17.93■□□□□ 0.46
SHKBP1-217ENST00000598558 FKBP4Q02790 459 aaKnown RBP eCLIP17.93■□□□□ 0.46
SHKBP1-217ENST00000598558 SOGA3Q5TF21 947 aa17.93■□□□□ 0.46
SHKBP1-217ENST00000598558 RTKN2Q8IZC4 609 aa17.93■□□□□ 0.46
SHKBP1-217ENST00000598558 TAOK3Q9H2K8 898 aa17.93■□□□□ 0.46
SHKBP1-217ENST00000598558 BICC1Q9H694 974 aaKnown RBP17.93■□□□□ 0.46
SHKBP1-217ENST00000598558 RNF181Q9P0P0 153 aa17.93■□□□□ 0.46
SHKBP1-217ENST00000598558 WTIPA6NIX2 430 aaPredicted RBP17.92■□□□□ 0.46
SHKBP1-217ENST00000598558 LMNB1P20700 586 aa17.92■□□□□ 0.46
SHKBP1-217ENST00000598558 GPSM2P81274 684 aa17.92■□□□□ 0.46
SHKBP1-217ENST00000598558 CC2D2BQ6DHV5 1058 aa17.92■□□□□ 0.46
SHKBP1-217ENST00000598558 CACNA1SQ13698 1873 aa17.91■□□□□ 0.46
SHKBP1-217ENST00000598558 RABL6Q3YEC7 729 aaPredicted RBP17.91■□□□□ 0.46
SHKBP1-217ENST00000598558 PANK1Q8TE04 598 aa17.91■□□□□ 0.46
SHKBP1-217ENST00000598558 ZNF594Q96JF6 807 aaPredicted RBP17.91■□□□□ 0.46
SHKBP1-217ENST00000598558 PSMD1Q99460 953 aa17.91■□□□□ 0.46
SHKBP1-217ENST00000598558 ANKRD18AQ8IVF6 992 aa17.9■□□□□ 0.46
SHKBP1-217ENST00000598558 DZIP1LQ8IYY4 767 aaKnown RBP17.9■□□□□ 0.46
SHKBP1-217ENST00000598558 MPNDQ8N594 471 aa17.9■□□□□ 0.46
SHKBP1-217ENST00000598558 RTFDC1Q9BY42 306 aaPredicted RBP17.9■□□□□ 0.46
SHKBP1-217ENST00000598558 CHMP3Q9Y3E7 222 aa17.9■□□□□ 0.46
SHKBP1-217ENST00000598558 TMC4Q7Z404 712 aa17.89■□□□□ 0.45
SHKBP1-217ENST00000598558 POLLQ9UGP5 575 aa17.89■□□□□ 0.45
SHKBP1-217ENST00000598558 MINPP1Q9UNW1 487 aa17.89■□□□□ 0.45
SHKBP1-217ENST00000598558 FER1L6Q2WGJ9 1857 aa17.88■□□□□ 0.45
SHKBP1-217ENST00000598558 COL4A5P29400 1685 aa17.88■□□□□ 0.45
SHKBP1-217ENST00000598558 C20orf194Q5TEA3 1177 aa17.88■□□□□ 0.45
SHKBP1-217ENST00000598558 DPP8Q6V1X1 898 aaPredicted RBP17.88■□□□□ 0.45
SHKBP1-217ENST00000598558 GPR101Q96P66 508 aaPredicted RBP17.88■□□□□ 0.45
SHKBP1-217ENST00000598558 CDC5LQ99459 802 aaKnown RBP17.88■□□□□ 0.45
SHKBP1-217ENST00000598558 BSDC1Q9NW68 430 aaPredicted RBP17.88■□□□□ 0.45
SHKBP1-217ENST00000598558 NSFL1CQ9UNZ2 370 aaKnown RBP17.88■□□□□ 0.45
SHKBP1-217ENST00000598558 LRRFIP2Q9Y608 721 aaKnown RBP17.88■□□□□ 0.45
SHKBP1-217ENST00000598558 ANKRD18BA2A2Z9 1011 aa17.87■□□□□ 0.45
SHKBP1-217ENST00000598558 UBTFL1P0CB47 393 aaPredicted RBP17.87■□□□□ 0.45
SHKBP1-217ENST00000598558 IARSP41252 1262 aaKnown RBP17.87■□□□□ 0.45
SHKBP1-217ENST00000598558 IFIT5Q13325 482 aaKnown RBP17.87■□□□□ 0.45
SHKBP1-217ENST00000598558 ZNF784Q8NCA9 323 aaPredicted RBP17.87■□□□□ 0.45
SHKBP1-217ENST00000598558 PUS3Q9BZE2 481 aaKnown RBP17.87■□□□□ 0.45
SHKBP1-217ENST00000598558 RFX5P48382 616 aaPredicted RBP17.86■□□□□ 0.45
SHKBP1-217ENST00000598558 GRIPAP1Q4V328 841 aa17.86■□□□□ 0.45
SHKBP1-217ENST00000598558 KLHDC4Q8TBB5 520 aa17.86■□□□□ 0.45
SHKBP1-217ENST00000598558 PODXL2Q9NZ53 605 aa17.86■□□□□ 0.45
SHKBP1-217ENST00000598558 DUOX1Q9NRD9 1551 aa17.86■□□□□ 0.45
SHKBP1-217ENST00000598558 SNAP23O00161 211 aa17.85■□□□□ 0.45
SHKBP1-217ENST00000598558 ZBTB7BO15156 539 aaPredicted RBP17.85■□□□□ 0.45
SHKBP1-217ENST00000598558 IGHMBP2P38935 993 aaKnown RBP17.85■□□□□ 0.45
SHKBP1-217ENST00000598558 AOC3Q16853 763 aa17.85■□□□□ 0.45
SHKBP1-217ENST00000598558 CCDC57Q2TAC2 916 aa17.85■□□□□ 0.45
SHKBP1-217ENST00000598558 TBC1D16Q8TBP0 767 aa17.85■□□□□ 0.45
SHKBP1-217ENST00000598558 FTSJ3Q8IY81 847 aaKnown RBP17.84■□□□□ 0.45
SHKBP1-217ENST00000598558 HELBQ8NG08 1087 aaPredicted RBP17.84■□□□□ 0.45
SHKBP1-217ENST00000598558 ZNF526Q8TF50 670 aaPredicted RBP17.84■□□□□ 0.45
SHKBP1-217ENST00000598558 TMX4Q9H1E5 349 aaPredicted RBP17.84■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms