RNA–Protein interactions for RNA: ENST00000596624.1

PNKP-208, Transcript of polynucleotide kinase 3'-phosphatase, human

TSL 4

Gene PNKP, Length 548 nt, Biotype processed transcript, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PNKP-208	ENST00000596624	CST9	Q5W186	159 aa		13.84	□□□□□ -0.19
PNKP-208	ENST00000596624	MPND	Q8N594	471 aa		13.84	□□□□□ -0.19
PNKP-208	ENST00000596624	TMX4	Q9H1E5	349 aa	Predicted RBP	13.84	□□□□□ -0.19
PNKP-208	ENST00000596624	ADARB2	Q9NS39	739 aa	Known RBP	13.84	□□□□□ -0.19
PNKP-208	ENST00000596624	CHPF2	Q9P2E5	772 aa		13.84	□□□□□ -0.19
PNKP-208	ENST00000596624	TRMT112	Q9UI30	125 aa	Known RBP	13.84	□□□□□ -0.19
PNKP-208	ENST00000596624	ADAMTS8	Q9UP79	889 aa		13.84	□□□□□ -0.19
PNKP-208	ENST00000596624	TAF1	P21675	1872 aa		13.83	□□□□□ -0.2
PNKP-208	ENST00000596624	AIMP1	Q12904	312 aa	Known RBP	13.83	□□□□□ -0.2
PNKP-208	ENST00000596624	DDX10	Q13206	875 aa	Known RBP	13.83	□□□□□ -0.2
PNKP-208	ENST00000596624	DPP8	Q6V1X1	898 aa	Predicted RBP	13.83	□□□□□ -0.2
PNKP-208	ENST00000596624	ANKRD13D	Q6ZTN6	518 aa		13.83	□□□□□ -0.2
PNKP-208	ENST00000596624	DDX46	Q7L014	1031 aa	Known RBP	13.83	□□□□□ -0.2
PNKP-208	ENST00000596624	ZC3H15	Q8WU90	426 aa	Known RBP	13.83	□□□□□ -0.2
PNKP-208	ENST00000596624	DBF4	Q9UBU7	674 aa	Predicted RBP	13.83	□□□□□ -0.2
PNKP-208	ENST00000596624	WDR33	Q9C0J8	1336 aa	Known RBP	13.83	□□□□□ -0.2
PNKP-208	ENST00000596624	TCERG1	O14776	1098 aa	Known RBP	13.82	□□□□□ -0.2
PNKP-208	ENST00000596624	MAP2K1	Q02750	393 aa	Predicted RBP	13.82	□□□□□ -0.2
PNKP-208	ENST00000596624	HDGFL1	Q5TGJ6	251 aa		13.82	□□□□□ -0.2
PNKP-208	ENST00000596624	CCDC146	Q8IYE0	955 aa		13.82	□□□□□ -0.2
PNKP-208	ENST00000596624	HYPK	Q9NX55	129 aa		13.82	□□□□□ -0.2
PNKP-208	ENST00000596624	TLL2	Q9Y6L7	1015 aa		13.82	□□□□□ -0.2
PNKP-208	ENST00000596624	YDJC	A8MPS7	323 aa		13.81	□□□□□ -0.2
PNKP-208	ENST00000596624	FMR1	Q06787	632 aa	Known RBP eCLIP	13.81	□□□□□ -0.2
PNKP-208	ENST00000596624	TNIP1	Q15025	636 aa		13.81	□□□□□ -0.2
PNKP-208	ENST00000596624	CIAPIN1	Q6FI81	312 aa		13.81	□□□□□ -0.2
PNKP-208	ENST00000596624	NECTIN2	Q92692	538 aa		13.81	□□□□□ -0.2
PNKP-208	ENST00000596624	HHIPL1	Q96JK4	782 aa		13.81	□□□□□ -0.2
PNKP-208	ENST00000596624	GMPS	P49915	693 aa	Predicted RBP	13.8	□□□□□ -0.2
PNKP-208	ENST00000596624	HIRA	P54198	1017 aa	Predicted RBP	13.8	□□□□□ -0.2
PNKP-208	ENST00000596624	NEUROD2	Q15784	382 aa		13.8	□□□□□ -0.2
PNKP-208	ENST00000596624	DUSP27	Q5VZP5	1158 aa		13.8	□□□□□ -0.2
PNKP-208	ENST00000596624	DPF2	Q92785	391 aa		13.8	□□□□□ -0.2
PNKP-208	ENST00000596624	AIDA	Q96BJ3	306 aa		13.8	□□□□□ -0.2
PNKP-208	ENST00000596624	PRKRIP1	Q9H875	184 aa	Predicted RBP	13.8	□□□□□ -0.2
PNKP-208	ENST00000596624	COL4A1	P02462	1669 aa		13.79	□□□□□ -0.2
PNKP-208	ENST00000596624	TRAF5	O00463	557 aa		13.79	□□□□□ -0.2
PNKP-208	ENST00000596624	HSPA8	P11142	646 aa	Known RBP	13.79	□□□□□ -0.2
PNKP-208	ENST00000596624	ECE1	P42892	770 aa		13.79	□□□□□ -0.2
PNKP-208	ENST00000596624	WDR43	Q15061	677 aa	Known RBP eCLIP	13.79	□□□□□ -0.2
PNKP-208	ENST00000596624	SAPCD2	Q86UD0	394 aa		13.79	□□□□□ -0.2
PNKP-208	ENST00000596624	CELF1	Q92879	486 aa	Known RBP	13.79	□□□□□ -0.2
PNKP-208	ENST00000596624	FAM89A	Q96GI7	184 aa		13.79	□□□□□ -0.2
PNKP-208	ENST00000596624	CAPNS2	Q96L46	248 aa		13.79	□□□□□ -0.2
PNKP-208	ENST00000596624	MBIP	Q9NS73	344 aa		13.79	□□□□□ -0.2
PNKP-208	ENST00000596624	ABT1	Q9ULW3	272 aa	Known RBP	13.79	□□□□□ -0.2
PNKP-208	ENST00000596624	MAP2K2	P36507	400 aa		13.78	□□□□□ -0.2
PNKP-208	ENST00000596624	IFT57	Q9NWB7	429 aa		13.78	□□□□□ -0.2
PNKP-208	ENST00000596624	PODXL2	Q9NZ53	605 aa		13.78	□□□□□ -0.2
PNKP-208	ENST00000596624	ZNF609	O15014	1411 aa		13.77	□□□□□ -0.21
PNKP-208	ENST00000596624	RAD17	O75943	681 aa		13.77	□□□□□ -0.21
PNKP-208	ENST00000596624	LBX1	P52954	281 aa		13.77	□□□□□ -0.21
PNKP-208	ENST00000596624	ZBTB38	Q8NAP3	1195 aa	Predicted RBP	13.77	□□□□□ -0.21
PNKP-208	ENST00000596624	POLL	Q9UGP5	575 aa		13.77	□□□□□ -0.21
PNKP-208	ENST00000596624	CNOT7	Q9UIV1	285 aa	Known RBP	13.77	□□□□□ -0.21
PNKP-208	ENST00000596624	ATP5J2-PTCD1	G3V325	749 aa		13.76	□□□□□ -0.21
PNKP-208	ENST00000596624	IRS4	O14654	1257 aa	Predicted RBP	13.76	□□□□□ -0.21
PNKP-208	ENST00000596624	CAPN15	O75808	1086 aa		13.76	□□□□□ -0.21
PNKP-208	ENST00000596624	RPS12	P25398	132 aa	Known RBP	13.76	□□□□□ -0.21
PNKP-208	ENST00000596624	RPS8	P62241	208 aa	Known RBP	13.76	□□□□□ -0.21
PNKP-208	ENST00000596624	WASHC4	Q2M389	1173 aa		13.76	□□□□□ -0.21
PNKP-208	ENST00000596624	CDC37L1	Q7L3B6	337 aa		13.76	□□□□□ -0.21
PNKP-208	ENST00000596624	TRPM4	Q8TD43	1214 aa		13.76	□□□□□ -0.21
PNKP-208	ENST00000596624	GPR101	Q96P66	508 aa	Predicted RBP	13.76	□□□□□ -0.21
PNKP-208	ENST00000596624	LAS1L	Q9Y4W2	734 aa	Known RBP	13.76	□□□□□ -0.21
PNKP-208	ENST00000596624	HSP90B1	P14625	803 aa	Known RBP	13.75	□□□□□ -0.21
PNKP-208	ENST00000596624	GNAI1	P63096	354 aa		13.75	□□□□□ -0.21
PNKP-208	ENST00000596624	CALD1	Q05682	793 aa	Known RBP	13.75	□□□□□ -0.21
PNKP-208	ENST00000596624	CYP4F22	Q6NT55	531 aa		13.75	□□□□□ -0.21
PNKP-208	ENST00000596624	CCDC191	Q8NCU4	936 aa		13.75	□□□□□ -0.21
PNKP-208	ENST00000596624	GLIS2	Q9BZE0	524 aa	Predicted RBP	13.75	□□□□□ -0.21
PNKP-208	ENST00000596624	SCN9A	Q15858	1988 aa		13.74	□□□□□ -0.21
PNKP-208	ENST00000596624	RTL9	Q8NET4	1388 aa		13.74	□□□□□ -0.21
PNKP-208	ENST00000596624	SHTN1	A0MZ66	631 aa		13.74	□□□□□ -0.21
PNKP-208	ENST00000596624		H7C1D1	291 aa		13.74	□□□□□ -0.21
PNKP-208	ENST00000596624	PSMD14	O00487	310 aa		13.74	□□□□□ -0.21
PNKP-208	ENST00000596624	APAF1	O14727	1248 aa		13.74	□□□□□ -0.21
PNKP-208	ENST00000596624	CELF2	O95319	508 aa	Known RBP	13.74	□□□□□ -0.21
PNKP-208	ENST00000596624	PCCA	P05165	728 aa	Predicted RBP	13.74	□□□□□ -0.21
PNKP-208	ENST00000596624	GPSM2	P81274	684 aa		13.74	□□□□□ -0.21
PNKP-208	ENST00000596624	TBC1D16	Q8TBP0	767 aa		13.74	□□□□□ -0.21
PNKP-208	ENST00000596624	BCL2L13	Q9BXK5	485 aa		13.74	□□□□□ -0.21
PNKP-208	ENST00000596624	CHMP4A	Q9BY43	222 aa		13.74	□□□□□ -0.21
PNKP-208	ENST00000596624	PHAX	Q9H814	394 aa	Known RBP	13.74	□□□□□ -0.21
PNKP-208	ENST00000596624	NSFL1C	Q9UNZ2	370 aa	Known RBP	13.74	□□□□□ -0.21
PNKP-208	ENST00000596624	POLR2A	P24928	1970 aa	Known RBP	13.74	□□□□□ -0.21
PNKP-208	ENST00000596624	VIL1	P09327	827 aa	Known RBP	13.73	□□□□□ -0.21
PNKP-208	ENST00000596624	NCBP3	Q53F19	620 aa	Known RBP	13.73	□□□□□ -0.21
PNKP-208	ENST00000596624	MICALL2	Q8IY33	904 aa		13.73	□□□□□ -0.21
PNKP-208	ENST00000596624	EYA3	Q99504	573 aa		13.73	□□□□□ -0.21
PNKP-208	ENST00000596624	PSME4	Q14997	1843 aa		13.72	□□□□□ -0.21
PNKP-208	ENST00000596624	CA12	O43570	354 aa		13.72	□□□□□ -0.21
PNKP-208	ENST00000596624	PDE8A	O60658	829 aa		13.72	□□□□□ -0.21
PNKP-208	ENST00000596624	BRPF1	P55201	1214 aa	Predicted RBP	13.72	□□□□□ -0.21
PNKP-208	ENST00000596624	GOLGA2	Q08379	1002 aa		13.72	□□□□□ -0.21
PNKP-208	ENST00000596624	RIC3	Q7Z5B4	369 aa		13.72	□□□□□ -0.21
PNKP-208	ENST00000596624	C8orf58	Q8NAV2	365 aa		13.72	□□□□□ -0.21
PNKP-208	ENST00000596624	METTL22	Q9BUU2	404 aa	Predicted RBP	13.72	□□□□□ -0.21
PNKP-208	ENST00000596624	DBNDD1	Q9H9R9	158 aa		13.72	□□□□□ -0.21
PNKP-208	ENST00000596624	ZBTB12	Q9Y330	459 aa	Predicted RBP	13.72	□□□□□ -0.21

Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms