RNA–Protein interactions for RNA: ENST00000596457.1

LIG1-211, Transcript of DNA ligase 1, humanhuman

TSL 5

Gene LIG1, Length 792 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-211ENST00000596457 SBF1O95248 1867 aa14.06□□□□□ -0.16
LIG1-211ENST00000596457 PPEF1O14829 653 aaPredicted RBP14.05□□□□□ -0.16
LIG1-211ENST00000596457 PDE8AO60658 829 aa14.05□□□□□ -0.16
LIG1-211ENST00000596457 HSP90B1P14625 803 aaKnown RBP14.05□□□□□ -0.16
LIG1-211ENST00000596457 HOXA10P31260 410 aaPredicted RBP14.05□□□□□ -0.16
LIG1-211ENST00000596457 HTRA3P83110 453 aa14.05□□□□□ -0.16
LIG1-211ENST00000596457 JMYQ8N9B5 988 aa14.05□□□□□ -0.16
LIG1-211ENST00000596457 FRAT1Q92837 279 aaPredicted RBP14.05□□□□□ -0.16
LIG1-211ENST00000596457 CRAMP1Q96RY5 1269 aa14.05□□□□□ -0.16
LIG1-211ENST00000596457 SRCIN1Q9C0H9 1055 aa14.05□□□□□ -0.16
LIG1-211ENST00000596457 ABCC4O15439 1325 aa14.05□□□□□ -0.16
LIG1-211ENST00000596457 ZC3H4Q9UPT8 1303 aaKnown RBP14.05□□□□□ -0.16
LIG1-211ENST00000596457 MYH3P11055 1940 aa14.04□□□□□ -0.16
LIG1-211ENST00000596457 H7C1W4 665 aa14.04□□□□□ -0.16
LIG1-211ENST00000596457 BCAR3O75815 825 aa14.04□□□□□ -0.16
LIG1-211ENST00000596457 C9orf131Q5VYM1 1079 aa14.04□□□□□ -0.16
LIG1-211ENST00000596457 TMX4Q9H1E5 349 aaPredicted RBP14.04□□□□□ -0.16
LIG1-211ENST00000596457 C9orf78Q9NZ63 289 aaPredicted RBP14.04□□□□□ -0.16
LIG1-211ENST00000596457 SF3B3Q15393 1217 aaKnown RBP14.03□□□□□ -0.16
LIG1-211ENST00000596457 CCDC93Q567U6 631 aa14.03□□□□□ -0.16
LIG1-211ENST00000596457 SOGA3Q5TF21 947 aa14.03□□□□□ -0.16
LIG1-211ENST00000596457 SLC51AQ86UW1 340 aa14.03□□□□□ -0.16
LIG1-211ENST00000596457 RNF181Q9P0P0 153 aa14.03□□□□□ -0.16
LIG1-211ENST00000596457 CDHR2Q9BYE9 1310 aa14.03□□□□□ -0.16
LIG1-211ENST00000596457 FER1L6Q2WGJ9 1857 aa14.03□□□□□ -0.16
LIG1-211ENST00000596457 SPEF2Q9C093 1822 aa14.02□□□□□ -0.16
LIG1-211ENST00000596457 KDM2BQ8NHM5 1336 aa14.02□□□□□ -0.17
LIG1-211ENST00000596457 ALDH1L1O75891 902 aa14.02□□□□□ -0.17
LIG1-211ENST00000596457 GRAPQ13588 217 aa14.02□□□□□ -0.17
LIG1-211ENST00000596457 CCDC152Q4G0S7 254 aa14.02□□□□□ -0.17
LIG1-211ENST00000596457 GRAPLQ8TC17 118 aaPredicted RBP14.02□□□□□ -0.17
LIG1-211ENST00000596457 C7orf43Q8WVR3 580 aa14.02□□□□□ -0.17
LIG1-211ENST00000596457 SEC31BQ9NQW1 1179 aa14.02□□□□□ -0.17
LIG1-211ENST00000596457 NFKBIEO00221 500 aa14.01□□□□□ -0.17
LIG1-211ENST00000596457 BBOX1O75936 387 aa14.01□□□□□ -0.17
LIG1-211ENST00000596457 LMNB1P20700 586 aa14.01□□□□□ -0.17
LIG1-211ENST00000596457 CTSWP56202 376 aa14.01□□□□□ -0.17
LIG1-211ENST00000596457 CELF1Q92879 486 aaKnown RBP14.01□□□□□ -0.17
LIG1-211ENST00000596457 API5Q9BZZ5 524 aaKnown RBP14.01□□□□□ -0.17
LIG1-211ENST00000596457 TAOK3Q9H2K8 898 aa14.01□□□□□ -0.17
LIG1-211ENST00000596457 CHMP3Q9Y3E7 222 aa14.01□□□□□ -0.17
LIG1-211ENST00000596457 KIF16BQ96L93 1317 aa14□□□□□ -0.17
LIG1-211ENST00000596457 GRM8O00222 908 aa14□□□□□ -0.17
LIG1-211ENST00000596457 CASP7P55210 303 aa14□□□□□ -0.17
LIG1-211ENST00000596457 RTKN2Q8IZC4 609 aa14□□□□□ -0.17
LIG1-211ENST00000596457 TTLL11Q8NHH1 800 aa14□□□□□ -0.17
LIG1-211ENST00000596457 IPO8O15397 1037 aaKnown RBP13.99□□□□□ -0.17
LIG1-211ENST00000596457 TOMM70O94826 608 aa13.99□□□□□ -0.17
LIG1-211ENST00000596457 RPS8P62241 208 aaKnown RBP13.99□□□□□ -0.17
LIG1-211ENST00000596457 FKBP4Q02790 459 aaKnown RBP eCLIP13.99□□□□□ -0.17
LIG1-211ENST00000596457 SP8Q8IXZ3 490 aa13.99□□□□□ -0.17
LIG1-211ENST00000596457 CLUAP1Q96AJ1 413 aa13.99□□□□□ -0.17
LIG1-211ENST00000596457 GREM2Q9H772 168 aa13.99□□□□□ -0.17
LIG1-211ENST00000596457 ZNF277Q9NRM2 450 aaPredicted RBP13.99□□□□□ -0.17
LIG1-211ENST00000596457 TNNQ9UQP3 1299 aa13.99□□□□□ -0.17
LIG1-211ENST00000596457 ATP6V0A2Q9Y487 856 aa13.99□□□□□ -0.17
LIG1-211ENST00000596457 COL4A1P02462 1669 aa13.98□□□□□ -0.17
LIG1-211ENST00000596457 LTBP3Q9NS15 1303 aa13.98□□□□□ -0.17
LIG1-211ENST00000596457 NBPF7P0C2Y1 421 aaPredicted RBP13.98□□□□□ -0.17
LIG1-211ENST00000596457 BRPF1P55201 1214 aaPredicted RBP13.98□□□□□ -0.17
LIG1-211ENST00000596457 CC2D2BQ6DHV5 1058 aa13.98□□□□□ -0.17
LIG1-211ENST00000596457 ANKRD18AQ8IVF6 992 aa13.98□□□□□ -0.17
LIG1-211ENST00000596457 DICER1Q9UPY3 1922 aaKnown RBP13.98□□□□□ -0.17
LIG1-211ENST00000596457 CCT4P50991 539 aaKnown RBP13.97□□□□□ -0.17
LIG1-211ENST00000596457 FOXO4P98177 505 aa13.97□□□□□ -0.17
LIG1-211ENST00000596457 ZKSCAN2Q63HK3 967 aa13.97□□□□□ -0.17
LIG1-211ENST00000596457 DPP8Q6V1X1 898 aaPredicted RBP13.97□□□□□ -0.17
LIG1-211ENST00000596457 MPNDQ8N594 471 aa13.97□□□□□ -0.17
LIG1-211ENST00000596457 SUCLG2Q96I99 432 aa13.97□□□□□ -0.17
LIG1-211ENST00000596457 PLA2G12BQ9BX93 195 aa13.97□□□□□ -0.17
LIG1-211ENST00000596457 TIAM2Q8IVF5 1701 aa13.97□□□□□ -0.17
LIG1-211ENST00000596457 ITGA6P23229 1130 aa13.96□□□□□ -0.17
LIG1-211ENST00000596457 FAM161AQ3B820 660 aa13.96□□□□□ -0.17
LIG1-211ENST00000596457 EPHA10Q5JZY3 1008 aa13.96□□□□□ -0.17
LIG1-211ENST00000596457 DPY19L2Q6NUT2 758 aa13.96□□□□□ -0.17
LIG1-211ENST00000596457 LMBR1LQ6UX01 489 aa13.96□□□□□ -0.17
LIG1-211ENST00000596457 C16orf71Q8IYS4 520 aaPredicted RBP13.96□□□□□ -0.17
LIG1-211ENST00000596457 ARHGAP45Q92619 1136 aa13.96□□□□□ -0.17
LIG1-211ENST00000596457 CDC5LQ99459 802 aaKnown RBP13.96□□□□□ -0.17
LIG1-211ENST00000596457 NSFL1CQ9UNZ2 370 aaKnown RBP13.96□□□□□ -0.17
LIG1-211ENST00000596457 ANKRD18BA2A2Z9 1011 aa13.95□□□□□ -0.18
LIG1-211ENST00000596457 GLTPD2A6NH11 291 aa13.95□□□□□ -0.18
LIG1-211ENST00000596457 CSF1RP07333 972 aa13.95□□□□□ -0.18
LIG1-211ENST00000596457 HSPA1AP0DMV8 641 aaKnown RBP13.95□□□□□ -0.18
LIG1-211ENST00000596457 HSPA1BP0DMV9 641 aaKnown RBP13.95□□□□□ -0.18
LIG1-211ENST00000596457 TRIM27P14373 513 aa13.95□□□□□ -0.18
LIG1-211ENST00000596457 IGHMBP2P38935 993 aaKnown RBP13.95□□□□□ -0.18
LIG1-211ENST00000596457 IARSP41252 1262 aaKnown RBP13.95□□□□□ -0.18
LIG1-211ENST00000596457 ATF7IPQ6VMQ6 1270 aa13.95□□□□□ -0.18
LIG1-211ENST00000596457 TMC4Q7Z404 712 aa13.95□□□□□ -0.18
LIG1-211ENST00000596457 RBM46Q8TBY0 533 aaKnown RBP13.95□□□□□ -0.18
LIG1-211ENST00000596457 USP44Q9H0E7 712 aa13.95□□□□□ -0.18
LIG1-211ENST00000596457 C6orf229H3BNL8 230 aa13.94□□□□□ -0.18
LIG1-211ENST00000596457 GPSM2P81274 684 aa13.94□□□□□ -0.18
LIG1-211ENST00000596457 IFIT5Q13325 482 aaKnown RBP13.94□□□□□ -0.18
LIG1-211ENST00000596457 GRIPAP1Q4V328 841 aa13.94□□□□□ -0.18
LIG1-211ENST00000596457 TAF7LQ5H9L4 462 aa13.94□□□□□ -0.18
LIG1-211ENST00000596457 SUPT20HQ8NEM7 779 aa13.94□□□□□ -0.18
LIG1-211ENST00000596457 PSMD1Q99460 953 aa13.94□□□□□ -0.18
LIG1-211ENST00000596457 MPHOSPH8Q99549 860 aa13.94□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms