RNA–Protein interactions for RNA: ENST00000594104.1

VRK3-208, Transcript of vaccinia related kinase 3, humanhuman

Gene VRK3, Length 2,197 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-208ENST00000594104 RBM26Q5T8P6 1007 aaKnown RBP13.98□□□□□ -0.17
VRK3-208ENST00000594104 BRINP3Q76B58 766 aa13.98□□□□□ -0.17
VRK3-208ENST00000594104 RASEFQ8IZ41 740 aa13.98□□□□□ -0.17
VRK3-208ENST00000594104 DDX17Q92841 729 aaKnown RBP13.98□□□□□ -0.17
VRK3-208ENST00000594104 SYAP1Q96A49 352 aaPredicted RBP13.98□□□□□ -0.17
VRK3-208ENST00000594104 PPP1R9BQ96SB3 815 aa13.98□□□□□ -0.17
VRK3-208ENST00000594104 CARD10Q9BWT7 1032 aa13.98□□□□□ -0.17
VRK3-208ENST00000594104 PANK2Q9BZ23 570 aa13.98□□□□□ -0.17
VRK3-208ENST00000594104 ATP6V1DQ9Y5K8 247 aa13.98□□□□□ -0.17
VRK3-208ENST00000594104 H7C1W4 665 aa13.97□□□□□ -0.17
VRK3-208ENST00000594104 TMEM87AQ8NBN3 555 aa13.97□□□□□ -0.17
VRK3-208ENST00000594104 GPR108Q9NPR9 543 aa13.97□□□□□ -0.17
VRK3-208ENST00000594104 HMG20BQ9P0W2 317 aa13.97□□□□□ -0.17
VRK3-208ENST00000594104 NCLP19338 710 aaKnown RBP13.96□□□□□ -0.17
VRK3-208ENST00000594104 AK2P54819 239 aa13.96□□□□□ -0.17
VRK3-208ENST00000594104 CASP7P55210 303 aa13.96□□□□□ -0.17
VRK3-208ENST00000594104 ANKRD1Q15327 319 aa13.96□□□□□ -0.17
VRK3-208ENST00000594104 RUFY3Q7L099 469 aa13.96□□□□□ -0.17
VRK3-208ENST00000594104 PDRG1Q9NUG6 133 aa13.96□□□□□ -0.17
VRK3-208ENST00000594104 CHRM1P11229 460 aaPredicted RBP13.96□□□□□ -0.18
VRK3-208ENST00000594104 PTH1RQ03431 593 aa13.96□□□□□ -0.18
VRK3-208ENST00000594104 PTPN12Q05209 780 aaKnown RBP13.96□□□□□ -0.18
VRK3-208ENST00000594104 CAVIN1Q6NZI2 390 aaKnown RBP13.96□□□□□ -0.18
VRK3-208ENST00000594104 PRDM11Q9NQV5 511 aa13.96□□□□□ -0.18
VRK3-208ENST00000594104 ATG3Q9NT62 314 aa13.96□□□□□ -0.18
VRK3-208ENST00000594104 JCADQ9P266 1359 aa13.95□□□□□ -0.18
VRK3-208ENST00000594104 CASTP20810 708 aaKnown RBP13.95□□□□□ -0.18
VRK3-208ENST00000594104 NASPP49321 788 aaPredicted RBP13.95□□□□□ -0.18
VRK3-208ENST00000594104 EPHA10Q5JZY3 1008 aa13.95□□□□□ -0.18
VRK3-208ENST00000594104 GPIHBP1Q8IV16 184 aa13.95□□□□□ -0.18
VRK3-208ENST00000594104 GPT2Q8TD30 523 aa13.95□□□□□ -0.18
VRK3-208ENST00000594104 CCDC8Q9H0W5 538 aaPredicted RBP13.95□□□□□ -0.18
VRK3-208ENST00000594104 LAMB4A4D0S4 1761 aa13.95□□□□□ -0.18
VRK3-208ENST00000594104 A0A087WZG4 1122 aa13.95□□□□□ -0.18
VRK3-208ENST00000594104 PHF14O94880 888 aa13.95□□□□□ -0.18
VRK3-208ENST00000594104 NMIQ13287 307 aaPredicted RBP13.95□□□□□ -0.18
VRK3-208ENST00000594104 CSPP1Q1MSJ5 1256 aa13.95□□□□□ -0.18
VRK3-208ENST00000594104 TNNI3KQ59H18 835 aa13.95□□□□□ -0.18
VRK3-208ENST00000594104 CREB3L3Q68CJ9 461 aa13.95□□□□□ -0.18
VRK3-208ENST00000594104 PRPF40BQ6NWY9 871 aaKnown RBP13.95□□□□□ -0.18
VRK3-208ENST00000594104 FSD1Q9BTV5 496 aa13.95□□□□□ -0.18
VRK3-208ENST00000594104 SMC3Q9UQE7 1217 aa13.95□□□□□ -0.18
VRK3-208ENST00000594104 RBM8AQ9Y5S9 174 aaKnown RBP13.95□□□□□ -0.18
VRK3-208ENST00000594104 FPGT-TNNI3KV9GXZ4 949 aa13.95□□□□□ -0.18
VRK3-208ENST00000594104 CAPN15O75808 1086 aa13.94□□□□□ -0.18
VRK3-208ENST00000594104 ZSCAN22P10073 491 aaPredicted RBP13.94□□□□□ -0.18
VRK3-208ENST00000594104 KRT32Q14532 448 aa13.94□□□□□ -0.18
VRK3-208ENST00000594104 UBE3BQ7Z3V4 1068 aa13.94□□□□□ -0.18
VRK3-208ENST00000594104 CCDC191Q8NCU4 936 aa13.94□□□□□ -0.18
VRK3-208ENST00000594104 FAM212AQ96EL1 285 aa13.94□□□□□ -0.18
VRK3-208ENST00000594104 JAKMIP1Q96N16 626 aaKnown RBP13.94□□□□□ -0.18
VRK3-208ENST00000594104 MED23Q9ULK4 1368 aa13.94□□□□□ -0.18
VRK3-208ENST00000594104 IL2RBP14784 551 aa13.93□□□□□ -0.18
VRK3-208ENST00000594104 USPL1Q5W0Q7 1092 aa13.93□□□□□ -0.18
VRK3-208ENST00000594104 TOM1L2Q6ZVM7 507 aa13.93□□□□□ -0.18
VRK3-208ENST00000594104 TEX13AQ9BXU3 409 aaPredicted RBP13.93□□□□□ -0.18
VRK3-208ENST00000594104 CWC25Q9NXE8 425 aaPredicted RBP13.93□□□□□ -0.18
VRK3-208ENST00000594104 SLAIN2Q9P270 581 aa13.93□□□□□ -0.18
VRK3-208ENST00000594104 RPAP1Q9BWH6 1393 aaPredicted RBP13.93□□□□□ -0.18
VRK3-208ENST00000594104 KCNJ4P48050 445 aa13.93□□□□□ -0.18
VRK3-208ENST00000594104 HS1BP3Q53T59 392 aa13.93□□□□□ -0.18
VRK3-208ENST00000594104 LRSAM1Q6UWE0 723 aa13.93□□□□□ -0.18
VRK3-208ENST00000594104 TRIM44Q96DX7 344 aaPredicted RBP13.93□□□□□ -0.18
VRK3-208ENST00000594104 SIL1Q9H173 461 aa13.93□□□□□ -0.18
VRK3-208ENST00000594104 COL5A2P05997 1499 aaPredicted RBP13.92□□□□□ -0.18
VRK3-208ENST00000594104 SLC27A2O14975 620 aa13.92□□□□□ -0.18
VRK3-208ENST00000594104 ABCB7O75027 752 aa13.92□□□□□ -0.18
VRK3-208ENST00000594104 LETM1O95202 739 aaPredicted RBP13.92□□□□□ -0.18
VRK3-208ENST00000594104 CLCN1P35523 988 aa13.92□□□□□ -0.18
VRK3-208ENST00000594104 HAUS7Q99871 368 aa13.92□□□□□ -0.18
VRK3-208ENST00000594104 BOLA2Q9H3K6 86 aa13.92□□□□□ -0.18
VRK3-208ENST00000594104 TNS2Q63HR2 1409 aa13.92□□□□□ -0.18
VRK3-208ENST00000594104 GLI3P10071 1580 aa13.92□□□□□ -0.18
VRK3-208ENST00000594104 NBPF26B4DH59 902 aa13.92□□□□□ -0.18
VRK3-208ENST00000594104 STX6O43752 255 aa13.92□□□□□ -0.18
VRK3-208ENST00000594104 FOXO4P98177 505 aa13.92□□□□□ -0.18
VRK3-208ENST00000594104 NBPF14Q5TI25 921 aa13.92□□□□□ -0.18
VRK3-208ENST00000594104 NBPF10Q6P3W6 841 aaKnown RBP13.92□□□□□ -0.18
VRK3-208ENST00000594104 NOL8Q76FK4 1167 aaKnown RBP13.92□□□□□ -0.18
VRK3-208ENST00000594104 NBPF15Q8N660 670 aa13.92□□□□□ -0.18
VRK3-208ENST00000594104 CIAO1O76071 339 aa13.91□□□□□ -0.18
VRK3-208ENST00000594104 TFCP2Q12800 502 aa13.91□□□□□ -0.18
VRK3-208ENST00000594104 TRIM28Q13263 835 aaKnown RBP13.91□□□□□ -0.18
VRK3-208ENST00000594104 FAM227BQ96M60 508 aa13.91□□□□□ -0.18
VRK3-208ENST00000594104 TLR7Q9NYK1 1049 aaKnown RBP13.91□□□□□ -0.18
VRK3-208ENST00000594104 DBNLQ9UJU6 430 aaKnown RBP13.91□□□□□ -0.18
VRK3-208ENST00000594104 PDCP20941 246 aa13.9□□□□□ -0.18
VRK3-208ENST00000594104 IL15P40933 162 aaPredicted RBP13.9□□□□□ -0.18
VRK3-208ENST00000594104 BLOC1S2Q6QNY1 142 aa13.9□□□□□ -0.18
VRK3-208ENST00000594104 ARFGEF2Q9Y6D5 1785 aa13.9□□□□□ -0.18
VRK3-208ENST00000594104 TAF5LO75529 589 aa13.9□□□□□ -0.18
VRK3-208ENST00000594104 SYT1P21579 422 aa13.9□□□□□ -0.18
VRK3-208ENST00000594104 LMBR1LQ6UX01 489 aa13.9□□□□□ -0.18
VRK3-208ENST00000594104 RETREG2Q8NC44 543 aa13.9□□□□□ -0.18
VRK3-208ENST00000594104 RRAGDQ9NQL2 400 aaPredicted RBP13.9□□□□□ -0.18
VRK3-208ENST00000594104 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP13.9□□□□□ -0.18
VRK3-208ENST00000594104 UBR2Q8IWV8 1755 aa13.9□□□□□ -0.18
VRK3-208ENST00000594104 KCPQ6ZWJ8 1503 aa13.89□□□□□ -0.19
VRK3-208ENST00000594104 A0A0D9SFI3 127 aa13.89□□□□□ -0.19
VRK3-208ENST00000594104 ESPNB1AK53 854 aa13.89□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms