RNA–Protein interactions for RNA: ENST00000593008.1

DDX39A-220, Transcript of DExD-box helicase 39A, humanhuman

TSL 3

Gene DDX39A, Length 538 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX39A-220ENST00000593008 CASP7P55210 303 aa12.18□□□□□ -0.46
DDX39A-220ENST00000593008 MVPQ14764 893 aaKnown RBP12.18□□□□□ -0.46
DDX39A-220ENST00000593008 CRY2Q49AN0 593 aa12.18□□□□□ -0.46
DDX39A-220ENST00000593008 EPHA10Q5JZY3 1008 aa12.18□□□□□ -0.46
DDX39A-220ENST00000593008 UBE3BQ7Z3V4 1068 aa12.18□□□□□ -0.46
DDX39A-220ENST00000593008 SLC51AQ86UW1 340 aa12.18□□□□□ -0.46
DDX39A-220ENST00000593008 GPBP1L1Q9HC44 474 aaPredicted RBP12.18□□□□□ -0.46
DDX39A-220ENST00000593008 CWC25Q9NXE8 425 aaPredicted RBP12.18□□□□□ -0.46
DDX39A-220ENST00000593008 CCT4P50991 539 aaKnown RBP12.17□□□□□ -0.46
DDX39A-220ENST00000593008 NEXNQ0ZGT2 675 aa12.17□□□□□ -0.46
DDX39A-220ENST00000593008 GOLGA6L2Q8N9W4 650 aaPredicted RBP12.17□□□□□ -0.46
DDX39A-220ENST00000593008 KAZALD1Q96I82 304 aa12.17□□□□□ -0.46
DDX39A-220ENST00000593008 SUCLG2Q96I99 432 aa12.17□□□□□ -0.46
DDX39A-220ENST00000593008 NLRP3Q96P20 1036 aa12.17□□□□□ -0.46
DDX39A-220ENST00000593008 USP44Q9H0E7 712 aa12.17□□□□□ -0.46
DDX39A-220ENST00000593008 SLX4Q8IY92 1834 aa12.16□□□□□ -0.46
DDX39A-220ENST00000593008 SH3TC1Q8TE82 1336 aa12.16□□□□□ -0.46
DDX39A-220ENST00000593008 GRM8O00222 908 aa12.16□□□□□ -0.46
DDX39A-220ENST00000593008 ALDH1L1O75891 902 aa12.16□□□□□ -0.46
DDX39A-220ENST00000593008 LMNB1P20700 586 aa12.16□□□□□ -0.46
DDX39A-220ENST00000593008 ALDH1B1P30837 517 aa12.16□□□□□ -0.46
DDX39A-220ENST00000593008 PDE3AQ14432 1141 aa12.16□□□□□ -0.46
DDX39A-220ENST00000593008 SLC10A5Q5PT55 438 aa12.16□□□□□ -0.46
DDX39A-220ENST00000593008 C7orf43Q8WVR3 580 aa12.16□□□□□ -0.46
DDX39A-220ENST00000593008 CCDC85AQ96PX6 553 aaPredicted RBP12.16□□□□□ -0.46
DDX39A-220ENST00000593008 TAOK3Q9H2K8 898 aa12.16□□□□□ -0.46
DDX39A-220ENST00000593008 LAMB2P55268 1798 aa12.15□□□□□ -0.46
DDX39A-220ENST00000593008 ZBTB7BO15156 539 aaPredicted RBP12.15□□□□□ -0.46
DDX39A-220ENST00000593008 TRIM28Q13263 835 aaKnown RBP12.15□□□□□ -0.46
DDX39A-220ENST00000593008 CCDC93Q567U6 631 aa12.15□□□□□ -0.46
DDX39A-220ENST00000593008 CCDC191Q8NCU4 936 aa12.15□□□□□ -0.46
DDX39A-220ENST00000593008 RBM17Q96I25 401 aaKnown RBP12.15□□□□□ -0.46
DDX39A-220ENST00000593008 LRRFIP2Q9Y608 721 aaKnown RBP12.15□□□□□ -0.46
DDX39A-220ENST00000593008 H7C1W4 665 aa12.14□□□□□ -0.47
DDX39A-220ENST00000593008 HOXA10P31260 410 aaPredicted RBP12.14□□□□□ -0.47
DDX39A-220ENST00000593008 SOGA3Q5TF21 947 aa12.14□□□□□ -0.47
DDX39A-220ENST00000593008 ANKRD44Q8N8A2 993 aa12.14□□□□□ -0.47
DDX39A-220ENST00000593008 C9orf78Q9NZ63 289 aaPredicted RBP12.14□□□□□ -0.47
DDX39A-220ENST00000593008 UTYO14607 1347 aa12.13□□□□□ -0.47
DDX39A-220ENST00000593008 RIC1Q4ADV7 1423 aa12.13□□□□□ -0.47
DDX39A-220ENST00000593008 IRS4O14654 1257 aaPredicted RBP12.13□□□□□ -0.47
DDX39A-220ENST00000593008 PPEF1O14829 653 aaPredicted RBP12.13□□□□□ -0.47
DDX39A-220ENST00000593008 PCCAP05165 728 aaPredicted RBP12.13□□□□□ -0.47
DDX39A-220ENST00000593008 ZBTB38Q8NAP3 1195 aaPredicted RBP12.13□□□□□ -0.47
DDX39A-220ENST00000593008 CRAMP1Q96RY5 1269 aa12.13□□□□□ -0.47
DDX39A-220ENST00000593008 BICC1Q9H694 974 aaKnown RBP12.13□□□□□ -0.47
DDX39A-220ENST00000593008 NMRK2Q9NPI5 230 aa12.13□□□□□ -0.47
DDX39A-220ENST00000593008 ZNF277Q9NRM2 450 aaPredicted RBP12.13□□□□□ -0.47
DDX39A-220ENST00000593008 CACNA1SQ13698 1873 aa12.12□□□□□ -0.47
DDX39A-220ENST00000593008 UBTFL1P0CB47 393 aaPredicted RBP12.12□□□□□ -0.47
DDX39A-220ENST00000593008 C1QTNF8P60827 252 aa12.12□□□□□ -0.47
DDX39A-220ENST00000593008 FOXO4P98177 505 aa12.12□□□□□ -0.47
DDX39A-220ENST00000593008 RTKN2Q8IZC4 609 aa12.12□□□□□ -0.47
DDX39A-220ENST00000593008 ZBTB40Q9NUA8 1239 aa12.12□□□□□ -0.47
DDX39A-220ENST00000593008 DDX19BQ9UMR2 479 aa12.12□□□□□ -0.47
DDX39A-220ENST00000593008 LTBP3Q9NS15 1303 aa12.11□□□□□ -0.47
DDX39A-220ENST00000593008 KIF3CO14782 793 aa12.11□□□□□ -0.47
DDX39A-220ENST00000593008 FKBP4Q02790 459 aaKnown RBP eCLIP12.11□□□□□ -0.47
DDX39A-220ENST00000593008 FAM161AQ3B820 660 aa12.11□□□□□ -0.47
DDX39A-220ENST00000593008 DDX46Q7L014 1031 aaKnown RBP12.11□□□□□ -0.47
DDX39A-220ENST00000593008 PCDHB15Q9Y5E8 787 aa12.11□□□□□ -0.47
DDX39A-220ENST00000593008 CDHR2Q9BYE9 1310 aa12.11□□□□□ -0.47
DDX39A-220ENST00000593008 MS4A1P11836 297 aa12.1□□□□□ -0.47
DDX39A-220ENST00000593008 SIRT2Q8IXJ6 389 aa12.1□□□□□ -0.47
DDX39A-220ENST00000593008 KLHDC4Q8TBB5 520 aa12.1□□□□□ -0.47
DDX39A-220ENST00000593008 RRAGCQ9HB90 399 aa12.1□□□□□ -0.47
DDX39A-220ENST00000593008 TAF1P21675 1872 aa12.1□□□□□ -0.47
DDX39A-220ENST00000593008 KDM2BQ8NHM5 1336 aa12.1□□□□□ -0.47
DDX39A-220ENST00000593008 SBF1O95248 1867 aa12.09□□□□□ -0.47
DDX39A-220ENST00000593008 PNMA6EA0A0J9YXQ4 647 aa12.09□□□□□ -0.47
DDX39A-220ENST00000593008 CTSWP56202 376 aa12.09□□□□□ -0.47
DDX39A-220ENST00000593008 GRAPQ13588 217 aa12.09□□□□□ -0.47
DDX39A-220ENST00000593008 CEP85Q6P2H3 762 aa12.09□□□□□ -0.47
DDX39A-220ENST00000593008 LMBR1LQ6UX01 489 aa12.09□□□□□ -0.47
DDX39A-220ENST00000593008 GRAPLQ8TC17 118 aaPredicted RBP12.09□□□□□ -0.47
DDX39A-220ENST00000593008 TMX4Q9H1E5 349 aaPredicted RBP12.09□□□□□ -0.47
DDX39A-220ENST00000593008 GREM2Q9H772 168 aa12.09□□□□□ -0.47
DDX39A-220ENST00000593008 SEC31BQ9NQW1 1179 aa12.09□□□□□ -0.47
DDX39A-220ENST00000593008 CHMP3Q9Y3E7 222 aa12.09□□□□□ -0.47
DDX39A-220ENST00000593008 ATP6V0A2Q9Y487 856 aa12.09□□□□□ -0.47
DDX39A-220ENST00000593008 FER1L6Q2WGJ9 1857 aa12.08□□□□□ -0.48
DDX39A-220ENST00000593008 GLTPD2A6NH11 291 aa12.08□□□□□ -0.48
DDX39A-220ENST00000593008 BBOX1O75936 387 aa12.08□□□□□ -0.48
DDX39A-220ENST00000593008 GNAI2P04899 355 aa12.08□□□□□ -0.48
DDX39A-220ENST00000593008 IARSP41252 1262 aaKnown RBP12.08□□□□□ -0.48
DDX39A-220ENST00000593008 SF3B3Q15393 1217 aaKnown RBP12.08□□□□□ -0.48
DDX39A-220ENST00000593008 CC2D2BQ6DHV5 1058 aa12.08□□□□□ -0.48
DDX39A-220ENST00000593008 CELF1Q92879 486 aaKnown RBP12.08□□□□□ -0.48
DDX39A-220ENST00000593008 ZNF594Q96JF6 807 aaPredicted RBP12.08□□□□□ -0.48
DDX39A-220ENST00000593008 SPEF2Q9C093 1822 aa12.08□□□□□ -0.48
DDX39A-220ENST00000593008 SNED1Q8TER0 1413 aa12.08□□□□□ -0.48
DDX39A-220ENST00000593008 ZC3H4Q9UPT8 1303 aaKnown RBP12.08□□□□□ -0.48
DDX39A-220ENST00000593008 PDE8AO60658 829 aa12.07□□□□□ -0.48
DDX39A-220ENST00000593008 DDNO94850 711 aaPredicted RBP12.07□□□□□ -0.48
DDX39A-220ENST00000593008 GNAI3P08754 354 aa12.07□□□□□ -0.48
DDX39A-220ENST00000593008 TTLL11Q8NHH1 800 aa12.07□□□□□ -0.48
DDX39A-220ENST00000593008 PSMD1Q99460 953 aa12.07□□□□□ -0.48
DDX39A-220ENST00000593008 PLA2G12BQ9BX93 195 aa12.07□□□□□ -0.48
DDX39A-220ENST00000593008 PA2G4Q9UQ80 394 aaKnown RBP12.07□□□□□ -0.48
DDX39A-220ENST00000593008 MYH3P11055 1940 aa12.07□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms