RNA–Protein interactions for RNA: ENST00000589941.1

SMAD4-209, Transcript of SMAD family member 4, humanhuman

TSL 3

Gene SMAD4, Length 582 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-209ENST00000589941 RAD21O60216 631 aa11.65□□□□□ -0.54
SMAD4-209ENST00000589941 SLC10A4Q96EP9 437 aa11.65□□□□□ -0.54
SMAD4-209ENST00000589941 PRAM1Q96QH2 718 aa11.65□□□□□ -0.54
SMAD4-209ENST00000589941 CRB1P82279 1406 aa11.65□□□□□ -0.54
SMAD4-209ENST00000589941 PIK3C2AO00443 1686 aa11.65□□□□□ -0.55
SMAD4-209ENST00000589941 ADGRB1O14514 1584 aa11.64□□□□□ -0.55
SMAD4-209ENST00000589941 ADH1CP00326 375 aa11.64□□□□□ -0.55
SMAD4-209ENST00000589941 ITGAEP38570 1179 aa11.64□□□□□ -0.55
SMAD4-209ENST00000589941 VASH1Q7L8A9 365 aaPredicted RBP11.64□□□□□ -0.55
SMAD4-209ENST00000589941 DNAJC5GQ8N7S2 189 aa11.64□□□□□ -0.55
SMAD4-209ENST00000589941 HPS1Q92902 700 aa11.64□□□□□ -0.55
SMAD4-209ENST00000589941 HIRIP3Q9BW71 556 aaPredicted RBP11.64□□□□□ -0.55
SMAD4-209ENST00000589941 MAP4K5Q9Y4K4 846 aa11.64□□□□□ -0.55
SMAD4-209ENST00000589941 PCDHB9Q9Y5E1 797 aa11.64□□□□□ -0.55
SMAD4-209ENST00000589941 WASF2Q9Y6W5 498 aa11.64□□□□□ -0.55
SMAD4-209ENST00000589941 BCL9O00512 1426 aa11.63□□□□□ -0.55
SMAD4-209ENST00000589941 LOC105371045A0A1W2PR82 267 aa11.63□□□□□ -0.55
SMAD4-209ENST00000589941 LCE2BO14633 110 aa11.63□□□□□ -0.55
SMAD4-209ENST00000589941 DGAT1O75907 488 aa11.63□□□□□ -0.55
SMAD4-209ENST00000589941 PRELPP51888 382 aa11.63□□□□□ -0.55
SMAD4-209ENST00000589941 PKDCCQ504Y2 493 aa11.63□□□□□ -0.55
SMAD4-209ENST00000589941 DZIP3Q86Y13 1208 aaKnown RBP11.63□□□□□ -0.55
SMAD4-209ENST00000589941 MARCH10Q8NA82 808 aaPredicted RBP11.63□□□□□ -0.55
SMAD4-209ENST00000589941 EVA1CP58658 441 aa11.62□□□□□ -0.55
SMAD4-209ENST00000589941 CPDO75976 1380 aa11.62□□□□□ -0.55
SMAD4-209ENST00000589941 NR3C2P08235 984 aa11.61□□□□□ -0.55
SMAD4-209ENST00000589941 FSHRP23945 695 aa11.61□□□□□ -0.55
SMAD4-209ENST00000589941 NNTQ13423 1086 aa11.61□□□□□ -0.55
SMAD4-209ENST00000589941 Q6ZNB5 142 aa11.61□□□□□ -0.55
SMAD4-209ENST00000589941 KCTD15Q96SI1 283 aaPredicted RBP11.61□□□□□ -0.55
SMAD4-209ENST00000589941 QRICH2Q9H0J4 1663 aa11.61□□□□□ -0.55
SMAD4-209ENST00000589941 TRPM1Q7Z4N2 1603 aa11.6□□□□□ -0.55
SMAD4-209ENST00000589941 ANKRD30BQ9BXX2 1392 aa11.6□□□□□ -0.55
SMAD4-209ENST00000589941 TNS4Q8IZW8 715 aa11.6□□□□□ -0.55
SMAD4-209ENST00000589941 SIRT1Q96EB6 747 aa11.6□□□□□ -0.55
SMAD4-209ENST00000589941 THRAP3Q9Y2W1 955 aaKnown RBP11.6□□□□□ -0.55
SMAD4-209ENST00000589941 LY75O60449 1722 aa11.6□□□□□ -0.55
SMAD4-209ENST00000589941 AVPP01185 164 aa11.59□□□□□ -0.55
SMAD4-209ENST00000589941 DDB1Q16531 1140 aa11.59□□□□□ -0.55
SMAD4-209ENST00000589941 WASHC4Q2M389 1173 aa11.59□□□□□ -0.55
SMAD4-209ENST00000589941 RGL3Q3MIN7 710 aa11.59□□□□□ -0.55
SMAD4-209ENST00000589941 USP19O94966 1318 aa11.59□□□□□ -0.55
SMAD4-209ENST00000589941 KAT6BQ8WYB5 2073 aa11.58□□□□□ -0.56
SMAD4-209ENST00000589941 CICQ96RK0 1608 aaPredicted RBP11.58□□□□□ -0.56
SMAD4-209ENST00000589941 POM121CA8CG34 1229 aa11.58□□□□□ -0.56
SMAD4-209ENST00000589941 HTRA3P83110 453 aa11.58□□□□□ -0.56
SMAD4-209ENST00000589941 NR5A1Q13285 461 aa11.58□□□□□ -0.56
SMAD4-209ENST00000589941 CDV3Q9UKY7 258 aaKnown RBP11.58□□□□□ -0.56
SMAD4-209ENST00000589941 ABCC6O95255 1503 aa11.58□□□□□ -0.56
SMAD4-209ENST00000589941 SLIT3O75094 1523 aa11.57□□□□□ -0.56
SMAD4-209ENST00000589941 A6NJR5 290 aa11.57□□□□□ -0.56
SMAD4-209ENST00000589941 C11orf95C9JLR9 678 aaPredicted RBP11.57□□□□□ -0.56
SMAD4-209ENST00000589941 INTS6LQ5JSJ4 861 aaKnown RBP11.57□□□□□ -0.56
SMAD4-209ENST00000589941 NGDNQ8NEJ9 315 aaKnown RBP11.57□□□□□ -0.56
SMAD4-209ENST00000589941 ZNF330Q9Y3S2 320 aaPredicted RBP11.57□□□□□ -0.56
SMAD4-209ENST00000589941 TNS2Q63HR2 1409 aa11.57□□□□□ -0.56
SMAD4-209ENST00000589941 DOT1LQ8TEK3 1739 aa11.57□□□□□ -0.56
SMAD4-209ENST00000589941 ESPNB1AK53 854 aa11.56□□□□□ -0.56
SMAD4-209ENST00000589941 CFAP70Q5T0N1 1121 aa11.56□□□□□ -0.56
SMAD4-209ENST00000589941 PNPLA7Q6ZV29 1317 aa11.56□□□□□ -0.56
SMAD4-209ENST00000589941 EIF3AQ14152 1382 aaKnown RBP11.55□□□□□ -0.56
SMAD4-209ENST00000589941 KIAA1551Q9HCM1 1747 aa11.55□□□□□ -0.56
SMAD4-209ENST00000589941 ST8SIA5O15466 376 aa11.55□□□□□ -0.56
SMAD4-209ENST00000589941 RAB15P59190 212 aa11.55□□□□□ -0.56
SMAD4-209ENST00000589941 EIF4G2P78344 907 aaKnown RBP eCLIP11.55□□□□□ -0.56
SMAD4-209ENST00000589941 NBPF20Q3BBV1 942 aa11.55□□□□□ -0.56
SMAD4-209ENST00000589941 KLF16Q9BXK1 252 aaPredicted RBP11.55□□□□□ -0.56
SMAD4-209ENST00000589941 LRRC4BQ9NT99 713 aa11.55□□□□□ -0.56
SMAD4-209ENST00000589941 USP54Q70EL1 1684 aa11.55□□□□□ -0.56
SMAD4-209ENST00000589941 PKD1L3Q7Z443 1732 aa11.55□□□□□ -0.56
SMAD4-209ENST00000589941 GRIN3BO60391 1043 aa11.54□□□□□ -0.56
SMAD4-209ENST00000589941 C14orf93Q9H972 538 aaKnown RBP11.54□□□□□ -0.56
SMAD4-209ENST00000589941 TOGARAM1Q9Y4F4 1720 aa11.53□□□□□ -0.56
SMAD4-209ENST00000589941 TIMP2P16035 220 aa11.53□□□□□ -0.56
SMAD4-209ENST00000589941 WWC1Q8IX03 1113 aa11.53□□□□□ -0.56
SMAD4-209ENST00000589941 CCDC116Q8IYX3 515 aa11.53□□□□□ -0.56
SMAD4-209ENST00000589941 POGKQ9P215 609 aa11.53□□□□□ -0.56
SMAD4-209ENST00000589941 CEP126Q9P2H0 1117 aa11.53□□□□□ -0.56
SMAD4-209ENST00000589941 POLR3AO14802 1390 aaPredicted RBP11.53□□□□□ -0.56
SMAD4-209ENST00000589941 C5P01031 1676 aa11.52□□□□□ -0.56
SMAD4-209ENST00000589941 ZBTB7CA1YPR0 619 aa11.52□□□□□ -0.57
SMAD4-209ENST00000589941 WASLO00401 505 aaPredicted RBP11.52□□□□□ -0.57
SMAD4-209ENST00000589941 POLD1P28340 1107 aa11.52□□□□□ -0.57
SMAD4-209ENST00000589941 WDR4P57081 412 aaKnown RBP11.52□□□□□ -0.57
SMAD4-209ENST00000589941 MCCD1P59942 119 aaPredicted RBP11.52□□□□□ -0.57
SMAD4-209ENST00000589941 PPP1R26Q5T8A7 1209 aaPredicted RBP11.52□□□□□ -0.57
SMAD4-209ENST00000589941 TRAF7Q6Q0C0 670 aa11.52□□□□□ -0.57
SMAD4-209ENST00000589941 ADAMTS19Q8TE59 1207 aa11.52□□□□□ -0.57
SMAD4-209ENST00000589941 ITPKCQ96DU7 683 aa11.52□□□□□ -0.57
SMAD4-209ENST00000589941 ACSBG1Q96GR2 724 aa11.52□□□□□ -0.57
SMAD4-209ENST00000589941 ZFAND3Q9H8U3 227 aa11.52□□□□□ -0.57
SMAD4-209ENST00000589941 AAASQ9NRG9 546 aa11.52□□□□□ -0.57
SMAD4-209ENST00000589941 BRD4O60885 1362 aaPredicted RBP11.52□□□□□ -0.57
SMAD4-209ENST00000589941 TAF1LQ8IZX4 1826 aa11.51□□□□□ -0.57
SMAD4-209ENST00000589941 JMYQ8N9B5 988 aa11.51□□□□□ -0.57
SMAD4-209ENST00000589941 ALG2Q9H553 416 aa11.51□□□□□ -0.57
SMAD4-209ENST00000589941 TMPRSS4Q9NRS4 437 aa11.51□□□□□ -0.57
SMAD4-209ENST00000589941 DACH1Q9UI36 760 aa11.51□□□□□ -0.57
SMAD4-209ENST00000589941 WWC3Q9ULE0 1092 aa11.51□□□□□ -0.57
SMAD4-209ENST00000589941 N4BP2Q86UW6 1770 aaPredicted RBP11.5□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms