RNA–Protein interactions for RNA: ENST00000589857.1

ZNF540-208, Transcript of zinc finger protein 540, humanhuman

TSL 4

Gene ZNF540, Length 575 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540-208ENST00000589857 ANKRD13DQ6ZTN6 518 aa12.8□□□□□ -0.36
ZNF540-208ENST00000589857 TICAM2Q86XR7 235 aa12.8□□□□□ -0.36
ZNF540-208ENST00000589857 NFATC2IPQ8NCF5 419 aa12.8□□□□□ -0.36
ZNF540-208ENST00000589857 XAGE3Q8WTP9 111 aa12.8□□□□□ -0.36
ZNF540-208ENST00000589857 NEURL1BA8MQ27 555 aa12.79□□□□□ -0.36
ZNF540-208ENST00000589857 KIF3CO14782 793 aa12.79□□□□□ -0.36
ZNF540-208ENST00000589857 AIMP1Q12904 312 aaKnown RBP12.79□□□□□ -0.36
ZNF540-208ENST00000589857 CUL4AQ13619 759 aa12.79□□□□□ -0.36
ZNF540-208ENST00000589857 GCKRQ14397 625 aa12.79□□□□□ -0.36
ZNF540-208ENST00000589857 PKD1L3Q7Z443 1732 aa12.79□□□□□ -0.36
ZNF540-208ENST00000589857 CEP350Q5VT06 3117 aa12.79□□□□□ -0.36
ZNF540-208ENST00000589857 RGPD2P0DJD1 1756 aa12.79□□□□□ -0.36
ZNF540-208ENST00000589857 FSD2A1L4K1 749 aa12.78□□□□□ -0.36
ZNF540-208ENST00000589857 GNPATO15228 680 aa12.78□□□□□ -0.36
ZNF540-208ENST00000589857 BAG4O95429 457 aaKnown RBP12.78□□□□□ -0.36
ZNF540-208ENST00000589857 CYP2E1P05181 493 aaPredicted RBP12.78□□□□□ -0.36
ZNF540-208ENST00000589857 ATP6V1AP38606 617 aa12.78□□□□□ -0.36
ZNF540-208ENST00000589857 NKX1-1Q15270 411 aaPredicted RBP12.78□□□□□ -0.36
ZNF540-208ENST00000589857 KLHL40Q2TBA0 621 aa12.78□□□□□ -0.36
ZNF540-208ENST00000589857 TRAPPC3LQ5T215 181 aa12.78□□□□□ -0.36
ZNF540-208ENST00000589857 TSHZ3Q63HK5 1081 aa12.78□□□□□ -0.36
ZNF540-208ENST00000589857 COPS6Q7L5N1 327 aa12.78□□□□□ -0.36
ZNF540-208ENST00000589857 AACSQ86V21 672 aa12.78□□□□□ -0.36
ZNF540-208ENST00000589857 PLBD2Q8NHP8 589 aa12.78□□□□□ -0.36
ZNF540-208ENST00000589857 PIGBQ92521 554 aa12.78□□□□□ -0.36
ZNF540-208ENST00000589857 SUCLG2Q96I99 432 aa12.78□□□□□ -0.36
ZNF540-208ENST00000589857 ZNF496Q96IT1 587 aaPredicted RBP12.78□□□□□ -0.36
ZNF540-208ENST00000589857 FOXD4L1Q9NU39 408 aa12.78□□□□□ -0.36
ZNF540-208ENST00000589857 CCDC87Q9NVE4 849 aa12.78□□□□□ -0.36
ZNF540-208ENST00000589857 RTCBQ9Y3I0 505 aaKnown RBP12.78□□□□□ -0.36
ZNF540-208ENST00000589857 RFX7Q2KHR2 1363 aa12.78□□□□□ -0.36
ZNF540-208ENST00000589857 CYP27B1O15528 508 aa12.77□□□□□ -0.37
ZNF540-208ENST00000589857 MMP10P09238 476 aa12.77□□□□□ -0.37
ZNF540-208ENST00000589857 ZKSCAN1P17029 563 aaPredicted RBP12.77□□□□□ -0.37
ZNF540-208ENST00000589857 CWF19L2Q2TBE0 894 aaKnown RBP12.77□□□□□ -0.37
ZNF540-208ENST00000589857 ARHGAP27Q6ZUM4 889 aa12.77□□□□□ -0.37
ZNF540-208ENST00000589857 TMX3Q96JJ7 454 aa12.77□□□□□ -0.37
ZNF540-208ENST00000589857 MYD88Q99836 296 aa12.77□□□□□ -0.37
ZNF540-208ENST00000589857 BICC1Q9H694 974 aaKnown RBP12.77□□□□□ -0.37
ZNF540-208ENST00000589857 BCS1LQ9Y276 419 aa12.77□□□□□ -0.37
ZNF540-208ENST00000589857 SCN11AQ9UI33 1791 aa12.76□□□□□ -0.37
ZNF540-208ENST00000589857 IGKV5-2P06315 115 aa12.76□□□□□ -0.37
ZNF540-208ENST00000589857 MYL6BP14649 208 aa12.76□□□□□ -0.37
ZNF540-208ENST00000589857 SLC39A6Q13433 755 aa12.76□□□□□ -0.37
ZNF540-208ENST00000589857 RNF20Q5VTR2 975 aa12.76□□□□□ -0.37
ZNF540-208ENST00000589857 RBM46Q8TBY0 533 aaKnown RBP12.76□□□□□ -0.37
ZNF540-208ENST00000589857 ANP32BQ92688 251 aaKnown RBP12.76□□□□□ -0.37
ZNF540-208ENST00000589857 ZSCAN31Q96LW9 406 aaPredicted RBP12.76□□□□□ -0.37
ZNF540-208ENST00000589857 TEX13AQ9BXU3 409 aaPredicted RBP12.76□□□□□ -0.37
ZNF540-208ENST00000589857 TM6SF1Q9BZW5 370 aa12.76□□□□□ -0.37
ZNF540-208ENST00000589857 COPRSQ9NQ92 184 aa12.76□□□□□ -0.37
ZNF540-208ENST00000589857 WWC3Q9ULE0 1092 aa12.76□□□□□ -0.37
ZNF540-208ENST00000589857 ZSCAN21Q9Y5A6 473 aaPredicted RBP12.76□□□□□ -0.37
ZNF540-208ENST00000589857 C5P01031 1676 aa12.76□□□□□ -0.37
ZNF540-208ENST00000589857 TUBGCP6Q96RT7 1819 aa12.76□□□□□ -0.37
ZNF540-208ENST00000589857 MBD3O95983 291 aa12.75□□□□□ -0.37
ZNF540-208ENST00000589857 PSMA5P28066 241 aa12.75□□□□□ -0.37
ZNF540-208ENST00000589857 FSTL1Q12841 308 aa12.75□□□□□ -0.37
ZNF540-208ENST00000589857 LSG1Q9H089 658 aaKnown RBP12.75□□□□□ -0.37
ZNF540-208ENST00000589857 PARP3Q9Y6F1 533 aa12.75□□□□□ -0.37
ZNF540-208ENST00000589857 DDX49Q9Y6V7 483 aaKnown RBP12.75□□□□□ -0.37
ZNF540-208ENST00000589857 WDR33Q9C0J8 1336 aaKnown RBP12.74□□□□□ -0.37
ZNF540-208ENST00000589857 PRAMEF22A3QJZ6 481 aa12.74□□□□□ -0.37
ZNF540-208ENST00000589857 NCLP19338 710 aaKnown RBP12.74□□□□□ -0.37
ZNF540-208ENST00000589857 RFC4P35249 363 aa12.74□□□□□ -0.37
ZNF540-208ENST00000589857 RABL6Q3YEC7 729 aaPredicted RBP12.74□□□□□ -0.37
ZNF540-208ENST00000589857 SH2B1Q9NRF2 756 aaPredicted RBP12.74□□□□□ -0.37
ZNF540-208ENST00000589857 ATP6V1DQ9Y5K8 247 aa12.74□□□□□ -0.37
ZNF540-208ENST00000589857 C4BP0C0L5 1744 aa12.74□□□□□ -0.37
ZNF540-208ENST00000589857 CSPP1Q1MSJ5 1256 aa12.73□□□□□ -0.37
ZNF540-208ENST00000589857 LINC00116Q8NCU8 138 aa12.73□□□□□ -0.37
ZNF540-208ENST00000589857 SYAP1Q96A49 352 aaPredicted RBP12.73□□□□□ -0.37
ZNF540-208ENST00000589857 GZF1Q9H116 711 aaPredicted RBP12.73□□□□□ -0.37
ZNF540-208ENST00000589857 SNRKQ9NRH2 765 aa12.73□□□□□ -0.37
ZNF540-208ENST00000589857 HMG20BQ9P0W2 317 aa12.73□□□□□ -0.37
ZNF540-208ENST00000589857 LIMCH1Q9UPQ0 1083 aa12.73□□□□□ -0.37
ZNF540-208ENST00000589857 KCNJ4P48050 445 aa12.72□□□□□ -0.37
ZNF540-208ENST00000589857 ANKRD1Q15327 319 aa12.72□□□□□ -0.37
ZNF540-208ENST00000589857 LRRFIP1Q32MZ4 808 aaKnown RBP12.72□□□□□ -0.37
ZNF540-208ENST00000589857 RC3H1Q5TC82 1133 aaKnown RBP12.72□□□□□ -0.37
ZNF540-208ENST00000589857 VPS53Q5VIR6 699 aa12.72□□□□□ -0.37
ZNF540-208ENST00000589857 MCTP1Q6DN14 999 aa12.72□□□□□ -0.37
ZNF540-208ENST00000589857 CWC27Q6UX04 472 aaKnown RBP12.72□□□□□ -0.37
ZNF540-208ENST00000589857 LRP10Q7Z4F1 713 aa12.72□□□□□ -0.37
ZNF540-208ENST00000589857 FAM43AQ8N2R8 423 aa12.72□□□□□ -0.37
ZNF540-208ENST00000589857 KCNB2Q92953 911 aa12.72□□□□□ -0.37
ZNF540-208ENST00000589857 GRPEL1Q9HAV7 217 aa12.72□□□□□ -0.37
ZNF540-208ENST00000589857 GPR108Q9NPR9 543 aa12.72□□□□□ -0.37
ZNF540-208ENST00000589857 CWC25Q9NXE8 425 aaPredicted RBP12.72□□□□□ -0.37
ZNF540-208ENST00000589857 PIM2Q9P1W9 311 aa12.72□□□□□ -0.37
ZNF540-208ENST00000589857 PA2G4Q9UQ80 394 aaKnown RBP12.72□□□□□ -0.37
ZNF540-208ENST00000589857 USP16Q9Y5T5 823 aa12.72□□□□□ -0.37
ZNF540-208ENST00000589857 SNX14Q9Y5W7 946 aa12.72□□□□□ -0.37
ZNF540-208ENST00000589857 CYP46A1Q9Y6A2 500 aa12.72□□□□□ -0.37
ZNF540-208ENST00000589857 LAMB4A4D0S4 1761 aa12.71□□□□□ -0.37
ZNF540-208ENST00000589857 CCDC171Q6TFL3 1326 aa12.71□□□□□ -0.37
ZNF540-208ENST00000589857 A0A087WZG4 1122 aa12.71□□□□□ -0.37
ZNF540-208ENST00000589857 A0A0G2JLW4 131 aa12.71□□□□□ -0.37
ZNF540-208ENST00000589857 SASH1O94885 1247 aa12.71□□□□□ -0.37
ZNF540-208ENST00000589857 BRD1O95696 1058 aa12.71□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms