RNA–Protein interactions for RNA: ENST00000589318.5

DDX39A-209, Transcript of DExD-box helicase 39A, human

TSL 1 (best)

Gene DDX39A, Length 1,903 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDX39A-209	ENST00000589318	ZNF594	Q96JF6	807 aa	Predicted RBP	18.76	■□□□□ 0.59
DDX39A-209	ENST00000589318	CCDC8	Q9H0W5	538 aa	Predicted RBP	18.76	■□□□□ 0.59
DDX39A-209	ENST00000589318	IRS4	O14654	1257 aa	Predicted RBP	18.75	■□□□□ 0.59
DDX39A-209	ENST00000589318	SMIM5	Q71RC9	77 aa		18.75	■□□□□ 0.59
DDX39A-209	ENST00000589318	TTLL11	Q8NHH1	800 aa		18.75	■□□□□ 0.59
DDX39A-209	ENST00000589318	RPS6KA4	O75676	772 aa		18.74	■□□□□ 0.59
DDX39A-209	ENST00000589318	GLRX3	O76003	335 aa	Known RBP	18.74	■□□□□ 0.59
DDX39A-209	ENST00000589318	TNNI3K	Q59H18	835 aa		18.74	■□□□□ 0.59
DDX39A-209	ENST00000589318	FPGT-TNNI3K	V9GXZ4	949 aa		18.74	■□□□□ 0.59
DDX39A-209	ENST00000589318	TRIM6-TRIM34	B2RNG4	842 aa		18.74	■□□□□ 0.59
DDX39A-209	ENST00000589318	EYA2	O00167	538 aa		18.74	■□□□□ 0.59
DDX39A-209	ENST00000589318	CIAO1	O76071	339 aa		18.74	■□□□□ 0.59
DDX39A-209	ENST00000589318	CTSW	P56202	376 aa		18.74	■□□□□ 0.59
DDX39A-209	ENST00000589318	LRRC24	Q50LG9	513 aa		18.74	■□□□□ 0.59
DDX39A-209	ENST00000589318	ZNF772	Q68DY9	489 aa	Predicted RBP	18.74	■□□□□ 0.59
DDX39A-209	ENST00000589318	CLEC4G	Q6UXB4	293 aa		18.74	■□□□□ 0.59
DDX39A-209	ENST00000589318	FAM196A	Q6ZSG2	479 aa		18.74	■□□□□ 0.59
DDX39A-209	ENST00000589318	AMIGO3	Q86WK7	504 aa		18.74	■□□□□ 0.59
DDX39A-209	ENST00000589318	RILPL2	Q969X0	211 aa		18.74	■□□□□ 0.59
DDX39A-209	ENST00000589318	NAP1L5	Q96NT1	182 aa	Predicted RBP	18.74	■□□□□ 0.59
DDX39A-209	ENST00000589318	C4A	P0C0L4	1744 aa		18.74	■□□□□ 0.59
DDX39A-209	ENST00000589318	ERC2	O15083	957 aa		18.73	■□□□□ 0.59
DDX39A-209	ENST00000589318	MAP4K4	O95819	1239 aa	Predicted RBP	18.73	■□□□□ 0.59
DDX39A-209	ENST00000589318	CHML	P26374	656 aa		18.73	■□□□□ 0.59
DDX39A-209	ENST00000589318	RBM6	P78332	1123 aa	Known RBP	18.73	■□□□□ 0.59
DDX39A-209	ENST00000589318	PARP10	Q53GL7	1025 aa		18.73	■□□□□ 0.59
DDX39A-209	ENST00000589318	PUS3	Q9BZE2	481 aa	Known RBP	18.73	■□□□□ 0.59
DDX39A-209	ENST00000589318	ISY1	Q9ULR0	285 aa	Known RBP	18.73	■□□□□ 0.59
DDX39A-209	ENST00000589318	RGL2	O15211	777 aa		18.72	■□□□□ 0.59
DDX39A-209	ENST00000589318	PDE8A	O60658	829 aa		18.72	■□□□□ 0.59
DDX39A-209	ENST00000589318	NTSR2	O95665	410 aa		18.72	■□□□□ 0.59
DDX39A-209	ENST00000589318	IL15	P40933	162 aa	Predicted RBP	18.72	■□□□□ 0.59
DDX39A-209	ENST00000589318	CCDC57	Q2TAC2	916 aa		18.72	■□□□□ 0.59
DDX39A-209	ENST00000589318	CASC1	Q6TDU7	716 aa		18.72	■□□□□ 0.59
DDX39A-209	ENST00000589318	GPATCH3	Q96I76	525 aa		18.72	■□□□□ 0.59
DDX39A-209	ENST00000589318	CCDC85A	Q96PX6	553 aa	Predicted RBP	18.72	■□□□□ 0.59
DDX39A-209	ENST00000589318	BCL2L12	Q9HB09	334 aa		18.72	■□□□□ 0.59
DDX39A-209	ENST00000589318	LRRC4B	Q9NT99	713 aa		18.72	■□□□□ 0.59
DDX39A-209	ENST00000589318	DBNL	Q9UJU6	430 aa	Known RBP	18.72	■□□□□ 0.59
DDX39A-209	ENST00000589318	NIP7	Q9Y221	180 aa	Known RBP eCLIP	18.72	■□□□□ 0.59
DDX39A-209	ENST00000589318	SH3TC1	Q8TE82	1336 aa		18.72	■□□□□ 0.59
DDX39A-209	ENST00000589318	UTP14A	Q9BVJ6	771 aa	Known RBP	18.72	■□□□□ 0.59
DDX39A-209	ENST00000589318	GREM2	Q9H772	168 aa		18.72	■□□□□ 0.59
DDX39A-209	ENST00000589318	ZNF652	Q9Y2D9	606 aa		18.72	■□□□□ 0.59
DDX39A-209	ENST00000589318	LRP5	O75197	1615 aa		18.71	■□□□□ 0.59
DDX39A-209	ENST00000589318	GOLGA6L3	A6NEY3	463 aa		18.71	■□□□□ 0.59
DDX39A-209	ENST00000589318	GNPAT	O15228	680 aa		18.71	■□□□□ 0.59
DDX39A-209	ENST00000589318	GPR108	Q9NPR9	543 aa		18.71	■□□□□ 0.59
DDX39A-209	ENST00000589318	FBXO3	Q9UK99	471 aa		18.71	■□□□□ 0.59
DDX39A-209	ENST00000589318	CASZ1	Q86V15	1759 aa		18.71	■□□□□ 0.59
DDX39A-209	ENST00000589318	COL24A1	Q17RW2	1714 aa		18.71	■□□□□ 0.59
DDX39A-209	ENST00000589318	IFIT5	Q13325	482 aa	Known RBP	18.7	■□□□□ 0.58
DDX39A-209	ENST00000589318	AK7	Q96M32	723 aa		18.7	■□□□□ 0.58
DDX39A-209	ENST00000589318	KIF2C	Q99661	725 aa		18.7	■□□□□ 0.58
DDX39A-209	ENST00000589318	USP26	Q9BXU7	913 aa		18.7	■□□□□ 0.58
DDX39A-209	ENST00000589318	ZNF609	O15014	1411 aa		18.7	■□□□□ 0.58
DDX39A-209	ENST00000589318	UBR3	Q6ZT12	1888 aa		18.7	■□□□□ 0.58
DDX39A-209	ENST00000589318	FSD2	A1L4K1	749 aa		18.7	■□□□□ 0.58
DDX39A-209	ENST00000589318	ITGA6	P23229	1130 aa		18.7	■□□□□ 0.58
DDX39A-209	ENST00000589318	CNTROB	Q8N137	903 aa		18.7	■□□□□ 0.58
DDX39A-209	ENST00000589318	ESYT1	Q9BSJ8	1104 aa		18.7	■□□□□ 0.58
DDX39A-209	ENST00000589318	NARF	Q9UHQ1	456 aa		18.7	■□□□□ 0.58
DDX39A-209	ENST00000589318	RIC1	Q4ADV7	1423 aa		18.69	■□□□□ 0.58
DDX39A-209	ENST00000589318	FAM177B	A6PVY3	158 aa		18.68	■□□□□ 0.58
DDX39A-209	ENST00000589318	TRIM37	O94972	964 aa		18.68	■□□□□ 0.58
DDX39A-209	ENST00000589318	HCLS1	P14317	486 aa	Predicted RBP	18.68	■□□□□ 0.58
DDX39A-209	ENST00000589318	DBNDD2	Q9BQY9	259 aa		18.68	■□□□□ 0.58
DDX39A-209	ENST00000589318	IL25	Q9H293	177 aa		18.68	■□□□□ 0.58
DDX39A-209	ENST00000589318	SRP68	Q9UHB9	627 aa	Known RBP	18.68	■□□□□ 0.58
DDX39A-209	ENST00000589318	RTCB	Q9Y3I0	505 aa	Known RBP	18.68	■□□□□ 0.58
DDX39A-209	ENST00000589318	USPL1	Q5W0Q7	1092 aa		18.68	■□□□□ 0.58
DDX39A-209	ENST00000589318	ARHGEF1	Q92888	912 aa	Known RBP	18.67	■□□□□ 0.58
DDX39A-209	ENST00000589318	TPM2	P07951	284 aa		18.66	■□□□□ 0.58
DDX39A-209	ENST00000589318	ATP5J	P18859	108 aa		18.66	■□□□□ 0.58
DDX39A-209	ENST00000589318	TBC1D9B	Q66K14	1250 aa		18.66	■□□□□ 0.58
DDX39A-209	ENST00000589318	BOLA2	Q9H3K6	86 aa		18.66	■□□□□ 0.58
DDX39A-209	ENST00000589318	RIPOR2	Q9Y4F9	1068 aa		18.66	■□□□□ 0.58
DDX39A-209	ENST00000589318	ANKRD18B	A2A2Z9	1011 aa		18.66	■□□□□ 0.58
DDX39A-209	ENST00000589318	REC8	O95072	547 aa		18.66	■□□□□ 0.58
DDX39A-209	ENST00000589318	TIMM10	P62072	90 aa		18.65	■□□□□ 0.58
DDX39A-209	ENST00000589318	TAF7L	Q5H9L4	462 aa		18.65	■□□□□ 0.58
DDX39A-209	ENST00000589318	EVI5L	Q96CN4	794 aa		18.65	■□□□□ 0.58
DDX39A-209	ENST00000589318	CEP126	Q9P2H0	1117 aa		18.64	■□□□□ 0.58
DDX39A-209	ENST00000589318	SPEF2	Q9C093	1822 aa		18.64	■□□□□ 0.58
DDX39A-209	ENST00000589318	RTL9	Q8NET4	1388 aa		18.64	■□□□□ 0.57
DDX39A-209	ENST00000589318	COL4A1	P02462	1669 aa		18.64	■□□□□ 0.57
DDX39A-209	ENST00000589318		A0A1B0GUL7	405 aa		18.64	■□□□□ 0.57
DDX39A-209	ENST00000589318	MRE11	P49959	708 aa		18.64	■□□□□ 0.57
DDX39A-209	ENST00000589318	SLC27A3	Q5K4L6	730 aa		18.64	■□□□□ 0.57
DDX39A-209	ENST00000589318	TBC1D2	Q9BYX2	928 aa		18.64	■□□□□ 0.57
DDX39A-209	ENST00000589318	RGS17	Q9UGC6	210 aa	Predicted RBP	18.64	■□□□□ 0.57
DDX39A-209	ENST00000589318	LDHAL6A	Q6ZMR3	332 aa		18.63	■□□□□ 0.57
DDX39A-209	ENST00000589318	VGLL2	Q8N8G2	317 aa		18.63	■□□□□ 0.57
DDX39A-209	ENST00000589318	SGSM2	O43147	1006 aa		18.62	■□□□□ 0.57
DDX39A-209	ENST00000589318	ZPR1	O75312	459 aa		18.62	■□□□□ 0.57
DDX39A-209	ENST00000589318	XRCC6	P12956	609 aa	Known RBP eCLIP	18.62	■□□□□ 0.57
DDX39A-209	ENST00000589318	ERFE	Q4G0M1	354 aa		18.62	■□□□□ 0.57
DDX39A-209	ENST00000589318	PROM2	Q8N271	834 aa		18.62	■□□□□ 0.57
DDX39A-209	ENST00000589318	RXRB	P28702	533 aa		18.62	■□□□□ 0.57
DDX39A-209	ENST00000589318	BICDL1	Q6ZP65	573 aa		18.62	■□□□□ 0.57

Retrieved 100 of 20,778 RNA–protein pairs in 71.1 ms