RNA–Protein interactions for RNA: ENST00000589117.5

ZNF540-206, Transcript of zinc finger protein 540, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene ZNF540, Length 2,349 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540-206ENST00000589117 CUL4AQ13619 759 aa8.92□□□□□ -0.98
ZNF540-206ENST00000589117 ANO8Q9HCE9 1232 aaPredicted RBP8.92□□□□□ -0.98
ZNF540-206ENST00000589117 ADCY9O60503 1353 aa8.92□□□□□ -0.98
ZNF540-206ENST00000589117 ERBB3P21860 1342 aa8.92□□□□□ -0.98
ZNF540-206ENST00000589117 GRM8O00222 908 aa8.92□□□□□ -0.98
ZNF540-206ENST00000589117 MBD3O95983 291 aa8.92□□□□□ -0.98
ZNF540-206ENST00000589117 PADI6Q6TGC4 694 aa8.92□□□□□ -0.98
ZNF540-206ENST00000589117 RIC3Q7Z5B4 369 aa8.92□□□□□ -0.98
ZNF540-206ENST00000589117 PI4K2BQ8TCG2 481 aa8.92□□□□□ -0.98
ZNF540-206ENST00000589117 ECHDC1Q9NTX5 307 aa8.92□□□□□ -0.98
ZNF540-206ENST00000589117 NLRP2Q9NX02 1062 aa8.92□□□□□ -0.98
ZNF540-206ENST00000589117 LMTK3Q96Q04 1460 aa8.92□□□□□ -0.98
ZNF540-206ENST00000589117 KDM3BQ7LBC6 1761 aa8.91□□□□□ -0.98
ZNF540-206ENST00000589117 HEG1Q9ULI3 1381 aa8.91□□□□□ -0.98
ZNF540-206ENST00000589117 CARNS1A5YM72 827 aa8.91□□□□□ -0.98
ZNF540-206ENST00000589117 SGSM2O43147 1006 aa8.91□□□□□ -0.98
ZNF540-206ENST00000589117 ZNF790Q6PG37 636 aa8.91□□□□□ -0.98
ZNF540-206ENST00000589117 TTC5Q8N0Z6 440 aa8.91□□□□□ -0.98
ZNF540-206ENST00000589117 ZGPATQ8N5A5 531 aaKnown RBP8.91□□□□□ -0.98
ZNF540-206ENST00000589117 PTCD2Q8WV60 388 aaKnown RBP8.91□□□□□ -0.98
ZNF540-206ENST00000589117 MST1RQ04912 1400 aa8.91□□□□□ -0.98
ZNF540-206ENST00000589117 KIF1AQ12756 1690 aa8.91□□□□□ -0.98
ZNF540-206ENST00000589117 C1orf167Q5SNV9 1468 aa8.91□□□□□ -0.98
ZNF540-206ENST00000589117 CSB-PGBD3P0DP91 1061 aa8.91□□□□□ -0.98
ZNF540-206ENST00000589117 ZC3H6P61129 1189 aaKnown RBP8.91□□□□□ -0.98
ZNF540-206ENST00000589117 IFNL2Q8IZJ0 200 aa8.91□□□□□ -0.98
ZNF540-206ENST00000589117 SYAP1Q96A49 352 aaPredicted RBP8.91□□□□□ -0.98
ZNF540-206ENST00000589117 EVI5LQ96CN4 794 aa8.91□□□□□ -0.98
ZNF540-206ENST00000589117 SLC52A2Q9HAB3 445 aa8.91□□□□□ -0.98
ZNF540-206ENST00000589117 ZSCAN21Q9Y5A6 473 aaPredicted RBP8.91□□□□□ -0.98
ZNF540-206ENST00000589117 RAD50Q92878 1312 aa8.9□□□□□ -0.98
ZNF540-206ENST00000589117 WDR33Q9C0J8 1336 aaKnown RBP8.9□□□□□ -0.98
ZNF540-206ENST00000589117 G3V3G9 751 aa8.9□□□□□ -0.98
ZNF540-206ENST00000589117 ATMINO43313 823 aaPredicted RBP8.9□□□□□ -0.98
ZNF540-206ENST00000589117 PRPF40AO75400 957 aaKnown RBP8.9□□□□□ -0.98
ZNF540-206ENST00000589117 ANXA1P04083 346 aa8.9□□□□□ -0.98
ZNF540-206ENST00000589117 ZKSCAN1P17029 563 aaPredicted RBP8.9□□□□□ -0.98
ZNF540-206ENST00000589117 UNC5CLQ8IV45 518 aa8.9□□□□□ -0.98
ZNF540-206ENST00000589117 PXYLP1Q8TE99 480 aa8.9□□□□□ -0.98
ZNF540-206ENST00000589117 LMBRD1Q9NUN5 540 aa8.9□□□□□ -0.98
ZNF540-206ENST00000589117 AXIN2Q9Y2T1 843 aa8.9□□□□□ -0.98
ZNF540-206ENST00000589117 ATP6V1DQ9Y5K8 247 aa8.9□□□□□ -0.98
ZNF540-206ENST00000589117 ADAMTSL3P82987 1691 aa8.9□□□□□ -0.98
ZNF540-206ENST00000589117 UTYO14607 1347 aa8.9□□□□□ -0.99
ZNF540-206ENST00000589117 NPHP3Q7Z494 1330 aa8.9□□□□□ -0.99
ZNF540-206ENST00000589117 ZNF445P59923 1031 aa8.89□□□□□ -0.99
ZNF540-206ENST00000589117 AIMP1Q12904 312 aaKnown RBP8.89□□□□□ -0.99
ZNF540-206ENST00000589117 DCAF5Q96JK2 942 aa8.89□□□□□ -0.99
ZNF540-206ENST00000589117 COLQQ9Y215 455 aaPredicted RBP8.89□□□□□ -0.99
ZNF540-206ENST00000589117 SNRPA1P09661 255 aaKnown RBP8.89□□□□□ -0.99
ZNF540-206ENST00000589117 NASPP49321 788 aaPredicted RBP8.89□□□□□ -0.99
ZNF540-206ENST00000589117 CCDC173Q0VFZ6 552 aa8.89□□□□□ -0.99
ZNF540-206ENST00000589117 CWC27Q6UX04 472 aaKnown RBP8.89□□□□□ -0.99
ZNF540-206ENST00000589117 LIMCH1Q9UPQ0 1083 aa8.89□□□□□ -0.99
ZNF540-206ENST00000589117 ADGRG1Q9Y653 693 aa8.89□□□□□ -0.99
ZNF540-206ENST00000589117 PHF14O94880 888 aa8.88□□□□□ -0.99
ZNF540-206ENST00000589117 BRD1O95696 1058 aa8.88□□□□□ -0.99
ZNF540-206ENST00000589117 MAP4K4O95819 1239 aaPredicted RBP8.88□□□□□ -0.99
ZNF540-206ENST00000589117 EVX2Q03828 476 aa8.88□□□□□ -0.99
ZNF540-206ENST00000589117 CWF19L2Q2TBE0 894 aaKnown RBP8.88□□□□□ -0.99
ZNF540-206ENST00000589117 CAVIN1Q6NZI2 390 aaKnown RBP8.88□□□□□ -0.99
ZNF540-206ENST00000589117 AACSQ86V21 672 aa8.88□□□□□ -0.99
ZNF540-206ENST00000589117 PANK2Q9BZ23 570 aa8.88□□□□□ -0.99
ZNF540-206ENST00000589117 PALD1Q9ULE6 856 aa8.88□□□□□ -0.99
ZNF540-206ENST00000589117 TBC1D2BQ9UPU7 963 aa8.88□□□□□ -0.99
ZNF540-206ENST00000589117 DCCP43146 1447 aa8.88□□□□□ -0.99
ZNF540-206ENST00000589117 PHKG2P15735 406 aa8.88□□□□□ -0.99
ZNF540-206ENST00000589117 KCNJ4P48050 445 aa8.88□□□□□ -0.99
ZNF540-206ENST00000589117 RNF20Q5VTR2 975 aa8.88□□□□□ -0.99
ZNF540-206ENST00000589117 NFATC2IPQ8NCF5 419 aa8.88□□□□□ -0.99
ZNF540-206ENST00000589117 ZSCAN31Q96LW9 406 aaPredicted RBP8.88□□□□□ -0.99
ZNF540-206ENST00000589117 FMNL2Q96PY5 1086 aa8.88□□□□□ -0.99
ZNF540-206ENST00000589117 UPF3BQ9BZI7 483 aaKnown RBP8.88□□□□□ -0.99
ZNF540-206ENST00000589117 PSMA5P28066 241 aa8.87□□□□□ -0.99
ZNF540-206ENST00000589117 ABL2P42684 1182 aa8.87□□□□□ -0.99
ZNF540-206ENST00000589117 PKP1Q13835 747 aa8.87□□□□□ -0.99
ZNF540-206ENST00000589117 QPCTQ16769 361 aa8.87□□□□□ -0.99
ZNF540-206ENST00000589117 CSPP1Q1MSJ5 1256 aa8.87□□□□□ -0.99
ZNF540-206ENST00000589117 PROSER3Q2NL68 480 aa8.87□□□□□ -0.99
ZNF540-206ENST00000589117 ANKRD13DQ6ZTN6 518 aa8.87□□□□□ -0.99
ZNF540-206ENST00000589117 SLAIN1Q8ND83 568 aa8.87□□□□□ -0.99
ZNF540-206ENST00000589117 GLMNQ92990 594 aa8.87□□□□□ -0.99
ZNF540-206ENST00000589117 METTL22Q9BUU2 404 aaPredicted RBP8.87□□□□□ -0.99
ZNF540-206ENST00000589117 TM6SF1Q9BZW5 370 aa8.87□□□□□ -0.99
ZNF540-206ENST00000589117 LSG1Q9H089 658 aaKnown RBP8.87□□□□□ -0.99
ZNF540-206ENST00000589117 PXDNQ92626 1479 aa8.87□□□□□ -0.99
ZNF540-206ENST00000589117 ZSCAN23Q3MJ62 389 aa8.87□□□□□ -0.99
ZNF540-206ENST00000589117 TMCO4Q5TGY1 634 aa8.87□□□□□ -0.99
ZNF540-206ENST00000589117 NOL8Q76FK4 1167 aaKnown RBP8.87□□□□□ -0.99
ZNF540-206ENST00000589117 BICC1Q9H694 974 aaKnown RBP8.87□□□□□ -0.99
ZNF540-206ENST00000589117 SH2B1Q9NRF2 756 aaPredicted RBP8.87□□□□□ -0.99
ZNF540-206ENST00000589117 ZDHHC9Q9Y397 364 aa8.87□□□□□ -0.99
ZNF540-206ENST00000589117 SNX14Q9Y5W7 946 aa8.87□□□□□ -0.99
ZNF540-206ENST00000589117 CYP46A1Q9Y6A2 500 aa8.87□□□□□ -0.99
ZNF540-206ENST00000589117 MYL6BP14649 208 aa8.86□□□□□ -0.99
ZNF540-206ENST00000589117 CABP4P57796 275 aa8.86□□□□□ -0.99
ZNF540-206ENST00000589117 COPS6Q7L5N1 327 aa8.86□□□□□ -0.99
ZNF540-206ENST00000589117 GAS2L3Q86XJ1 694 aa8.86□□□□□ -0.99
ZNF540-206ENST00000589117 RGPD2P0DJD1 1756 aa8.86□□□□□ -0.99
ZNF540-206ENST00000589117 CAMTA1Q9Y6Y1 1673 aa8.86□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 61.6 ms