RNA–Protein interactions for RNA: ENST00000588935.1

CNN1-208, Transcript of calponin 1, human

TSL 5

Gene CNN1, Length 700 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CNN1-208	ENST00000588935	COL11A2	P13942	1736 aa	Predicted RBP	18.33	■□□□□ 0.52
CNN1-208	ENST00000588935	CENPB	P07199	599 aa	Predicted RBP	18.33	■□□□□ 0.52
CNN1-208	ENST00000588935	IRX6	P78412	446 aa	Predicted RBP	18.33	■□□□□ 0.52
CNN1-208	ENST00000588935	MVP	Q14764	893 aa	Known RBP	18.33	■□□□□ 0.52
CNN1-208	ENST00000588935	SF3B3	Q15393	1217 aa	Known RBP	18.33	■□□□□ 0.52
CNN1-208	ENST00000588935	LMBR1L	Q6UX01	489 aa		18.33	■□□□□ 0.52
CNN1-208	ENST00000588935	DDX46	Q7L014	1031 aa	Known RBP	18.33	■□□□□ 0.52
CNN1-208	ENST00000588935	TTLL11	Q8NHH1	800 aa		18.33	■□□□□ 0.52
CNN1-208	ENST00000588935	KAZALD1	Q96I82	304 aa		18.33	■□□□□ 0.52
CNN1-208	ENST00000588935	C1orf115	Q9H7X2	142 aa		18.33	■□□□□ 0.52
CNN1-208	ENST00000588935	SEC31B	Q9NQW1	1179 aa		18.33	■□□□□ 0.52
CNN1-208	ENST00000588935	LRRFIP2	Q9Y608	721 aa	Known RBP	18.33	■□□□□ 0.52
CNN1-208	ENST00000588935	MYH3	P11055	1940 aa		18.32	■□□□□ 0.52
CNN1-208	ENST00000588935	ZBTB7B	O15156	539 aa	Predicted RBP	18.32	■□□□□ 0.52
CNN1-208	ENST00000588935	GNAI3	P08754	354 aa		18.32	■□□□□ 0.52
CNN1-208	ENST00000588935	CRY2	Q49AN0	593 aa		18.32	■□□□□ 0.52
CNN1-208	ENST00000588935	CCDC152	Q4G0S7	254 aa		18.32	■□□□□ 0.52
CNN1-208	ENST00000588935	STYK1	Q6J9G0	422 aa		18.32	■□□□□ 0.52
CNN1-208	ENST00000588935	TTLL6	Q8N841	843 aa		18.32	■□□□□ 0.52
CNN1-208	ENST00000588935	PLA2G12B	Q9BX93	195 aa		18.32	■□□□□ 0.52
CNN1-208	ENST00000588935	BICC1	Q9H694	974 aa	Known RBP	18.32	■□□□□ 0.52
CNN1-208	ENST00000588935	GREM2	Q9H772	168 aa		18.32	■□□□□ 0.52
CNN1-208	ENST00000588935	PDZRN3	Q9UPQ7	1066 aa		18.32	■□□□□ 0.52
CNN1-208	ENST00000588935	KIAA1551	Q9HCM1	1747 aa		18.32	■□□□□ 0.52
CNN1-208	ENST00000588935	DALRD3	Q5D0E6	543 aa	Known RBP	18.31	■□□□□ 0.52
CNN1-208	ENST00000588935	CNKSR1	Q969H4	720 aa		18.31	■□□□□ 0.52
CNN1-208	ENST00000588935	CRBN	Q96SW2	442 aa		18.31	■□□□□ 0.52
CNN1-208	ENST00000588935	ALDH1B1	P30837	517 aa		18.3	■□□□□ 0.52
CNN1-208	ENST00000588935	GPR162	Q16538	588 aa		18.3	■□□□□ 0.52
CNN1-208	ENST00000588935	FAM161A	Q3B820	660 aa		18.3	■□□□□ 0.52
CNN1-208	ENST00000588935	RIC1	Q4ADV7	1423 aa		18.3	■□□□□ 0.52
CNN1-208	ENST00000588935	SLX4	Q8IY92	1834 aa		18.29	■□□□□ 0.52
CNN1-208	ENST00000588935	GNAI2	P04899	355 aa		18.29	■□□□□ 0.52
CNN1-208	ENST00000588935	CSF1R	P07333	972 aa		18.29	■□□□□ 0.52
CNN1-208	ENST00000588935	HOXA10	P31260	410 aa	Predicted RBP	18.29	■□□□□ 0.52
CNN1-208	ENST00000588935	ANKRD44	Q8N8A2	993 aa		18.29	■□□□□ 0.52
CNN1-208	ENST00000588935	CELF1	Q92879	486 aa	Known RBP	18.29	■□□□□ 0.52
CNN1-208	ENST00000588935	CRAMP1	Q96RY5	1269 aa		18.29	■□□□□ 0.52
CNN1-208	ENST00000588935	DDX19B	Q9UMR2	479 aa		18.29	■□□□□ 0.52
CNN1-208	ENST00000588935	C21orf2	O43822	256 aa		18.28	■□□□□ 0.52
CNN1-208	ENST00000588935	ITGA6	P23229	1130 aa		18.28	■□□□□ 0.52
CNN1-208	ENST00000588935	PRPF40B	Q6NWY9	871 aa	Known RBP	18.28	■□□□□ 0.52
CNN1-208	ENST00000588935	OLFM4	Q6UX06	510 aa		18.28	■□□□□ 0.52
CNN1-208	ENST00000588935	SLC51A	Q86UW1	340 aa		18.28	■□□□□ 0.52
CNN1-208	ENST00000588935	ZNF594	Q96JF6	807 aa	Predicted RBP	18.28	■□□□□ 0.52
CNN1-208	ENST00000588935	HDAC5	Q9UQL6	1122 aa		18.28	■□□□□ 0.52
CNN1-208	ENST00000588935	ANKRD18B	A2A2Z9	1011 aa		18.27	■□□□□ 0.52
CNN1-208	ENST00000588935	YBX3	P16989	372 aa	Known RBP eCLIP	18.27	■□□□□ 0.52
CNN1-208	ENST00000588935	IFIT5	Q13325	482 aa	Known RBP	18.27	■□□□□ 0.52
CNN1-208	ENST00000588935	GRAP	Q13588	217 aa		18.27	■□□□□ 0.52
CNN1-208	ENST00000588935	GRAPL	Q8TC17	118 aa	Predicted RBP	18.27	■□□□□ 0.52
CNN1-208	ENST00000588935	DLEC1	Q9Y238	1755 aa		18.27	■□□□□ 0.51
CNN1-208	ENST00000588935	PPEF1	O14829	653 aa	Predicted RBP	18.26	■□□□□ 0.51
CNN1-208	ENST00000588935	RPS8	P62241	208 aa	Known RBP	18.26	■□□□□ 0.51
CNN1-208	ENST00000588935	CCDC57	Q2TAC2	916 aa		18.26	■□□□□ 0.51
CNN1-208	ENST00000588935	TAF7L	Q5H9L4	462 aa		18.26	■□□□□ 0.51
CNN1-208	ENST00000588935	ANKRD18A	Q8IVF6	992 aa		18.26	■□□□□ 0.51
CNN1-208	ENST00000588935	BRCA1	P38398	1863 aa	Known RBP	18.25	■□□□□ 0.51
CNN1-208	ENST00000588935	KLHDC4	Q8TBB5	520 aa		18.25	■□□□□ 0.51
CNN1-208	ENST00000588935	COL4A1	P02462	1669 aa		18.25	■□□□□ 0.51
CNN1-208	ENST00000588935	SPEF2	Q9C093	1822 aa		18.24	■□□□□ 0.51
CNN1-208	ENST00000588935	DCAF8L1	A6NGE4	600 aa		18.24	■□□□□ 0.51
CNN1-208	ENST00000588935	BBOX1	O75936	387 aa		18.24	■□□□□ 0.51
CNN1-208	ENST00000588935	RABL6	Q3YEC7	729 aa	Predicted RBP	18.24	■□□□□ 0.51
CNN1-208	ENST00000588935	ARHGAP27	Q6ZUM4	889 aa		18.24	■□□□□ 0.51
CNN1-208	ENST00000588935	CDC5L	Q99459	802 aa	Known RBP	18.24	■□□□□ 0.51
CNN1-208	ENST00000588935	IGHMBP2	P38935	993 aa	Known RBP	18.23	■□□□□ 0.51
CNN1-208	ENST00000588935	EXOC6	Q8TAG9	804 aa		18.23	■□□□□ 0.51
CNN1-208	ENST00000588935	MPHOSPH8	Q99549	860 aa		18.23	■□□□□ 0.51
CNN1-208	ENST00000588935	TMX4	Q9H1E5	349 aa	Predicted RBP	18.23	■□□□□ 0.51
CNN1-208	ENST00000588935	CHMP4B	Q9H444	224 aa	Known RBP	18.23	■□□□□ 0.51
CNN1-208	ENST00000588935	ZBTB40	Q9NUA8	1239 aa		18.23	■□□□□ 0.51
CNN1-208	ENST00000588935	SRGAP3	O43295	1099 aa		18.22	■□□□□ 0.51
CNN1-208	ENST00000588935	PNMA6E	A0A0J9YXQ4	647 aa		18.21	■□□□□ 0.51
CNN1-208	ENST00000588935	ATP8B2	P98198	1209 aa		18.21	■□□□□ 0.51
CNN1-208	ENST00000588935	C7orf43	Q8WVR3	580 aa		18.21	■□□□□ 0.51
CNN1-208	ENST00000588935	PUS3	Q9BZE2	481 aa	Known RBP	18.21	■□□□□ 0.51
CNN1-208	ENST00000588935	SIL1	Q9H173	461 aa		18.21	■□□□□ 0.51
CNN1-208	ENST00000588935	CNNM1	Q9NRU3	951 aa		18.21	■□□□□ 0.51
CNN1-208	ENST00000588935	PA2G4	Q9UQ80	394 aa	Known RBP	18.21	■□□□□ 0.51
CNN1-208	ENST00000588935	RTL9	Q8NET4	1388 aa		18.2	■□□□□ 0.5
CNN1-208	ENST00000588935	LDHAL6A	Q6ZMR3	332 aa		18.2	■□□□□ 0.5
CNN1-208	ENST00000588935	SP8	Q8IXZ3	490 aa		18.2	■□□□□ 0.5
CNN1-208	ENST00000588935	ATP6V0A2	Q9Y487	856 aa		18.2	■□□□□ 0.5
CNN1-208	ENST00000588935	RFX5	P48382	616 aa	Predicted RBP	18.19	■□□□□ 0.5
CNN1-208	ENST00000588935	HELB	Q8NG08	1087 aa	Predicted RBP	18.19	■□□□□ 0.5
CNN1-208	ENST00000588935	NSFL1C	Q9UNZ2	370 aa	Known RBP	18.19	■□□□□ 0.5
CNN1-208	ENST00000588935	GPSM2	P81274	684 aa		18.18	■□□□□ 0.5
CNN1-208	ENST00000588935	LRRC24	Q50LG9	513 aa		18.18	■□□□□ 0.5
CNN1-208	ENST00000588935	CCDC93	Q567U6	631 aa		18.18	■□□□□ 0.5
CNN1-208	ENST00000588935	CEP85	Q6P2H3	762 aa		18.18	■□□□□ 0.5
CNN1-208	ENST00000588935	BSDC1	Q9NW68	430 aa	Predicted RBP	18.18	■□□□□ 0.5
CNN1-208	ENST00000588935	ARFGEF1	Q9Y6D6	1849 aa		18.18	■□□□□ 0.5
CNN1-208	ENST00000588935	GRIN3B	O60391	1043 aa		18.17	■□□□□ 0.5
CNN1-208	ENST00000588935	RASSF7	Q02833	373 aa		18.17	■□□□□ 0.5
CNN1-208	ENST00000588935	PTPN12	Q05209	780 aa	Known RBP	18.17	■□□□□ 0.5
CNN1-208	ENST00000588935	MPND	Q8N594	471 aa		18.17	■□□□□ 0.5
CNN1-208	ENST00000588935	ANKIB1	Q9P2G1	1089 aa		18.17	■□□□□ 0.5
CNN1-208	ENST00000588935	MINPP1	Q9UNW1	487 aa		18.17	■□□□□ 0.5
CNN1-208	ENST00000588935	TAF5L	O75529	589 aa		18.16	■□□□□ 0.5

Retrieved 100 of 20,778 RNA–protein pairs in 45.2 ms