RNA–Protein interactions for RNA: ENST00000588323.1

VPS4B-203, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 3

Gene VPS4B, Length 463 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-203ENST00000588323 SCO2A0A1W2PP80 73 aa7.21□□□□□ -1.26
VPS4B-203ENST00000588323 RFX1P22670 979 aa7.21□□□□□ -1.26
VPS4B-203ENST00000588323 ARID4AP29374 1257 aaPredicted RBP7.21□□□□□ -1.26
VPS4B-203ENST00000588323 SHISA2Q6UWI4 295 aa7.21□□□□□ -1.26
VPS4B-203ENST00000588323 DHX32Q7L7V1 743 aaKnown RBP7.21□□□□□ -1.26
VPS4B-203ENST00000588323 TXNRD3Q86VQ6 643 aa7.21□□□□□ -1.26
VPS4B-203ENST00000588323 MYO19Q96H55 970 aa7.21□□□□□ -1.26
VPS4B-203ENST00000588323 C11orf16Q9NQ32 467 aa7.21□□□□□ -1.26
VPS4B-203ENST00000588323 FRRS1LQ9P0K9 344 aa7.21□□□□□ -1.26
VPS4B-203ENST00000588323 ZFATQ9P243 1243 aa7.21□□□□□ -1.26
VPS4B-203ENST00000588323 SASH3O75995 380 aa7.2□□□□□ -1.26
VPS4B-203ENST00000588323 TARSP26639 723 aaKnown RBP7.2□□□□□ -1.26
VPS4B-203ENST00000588323 MLLT1Q03111 559 aaPredicted RBP7.2□□□□□ -1.26
VPS4B-203ENST00000588323 PERM1Q5SV97 790 aa7.2□□□□□ -1.26
VPS4B-203ENST00000588323 CFAP70Q5T0N1 1121 aa7.2□□□□□ -1.26
VPS4B-203ENST00000588323 MSL1Q68DK7 614 aa7.2□□□□□ -1.26
VPS4B-203ENST00000588323 ELMSAN1Q6PJG2 1045 aa7.2□□□□□ -1.26
VPS4B-203ENST00000588323 IFT43Q96FT9 208 aa7.2□□□□□ -1.26
VPS4B-203ENST00000588323 GPLD1P80108 840 aa7.19□□□□□ -1.26
VPS4B-203ENST00000588323 CDCA8Q53HL2 280 aa7.19□□□□□ -1.26
VPS4B-203ENST00000588323 PRSS36Q5K4E3 855 aa7.19□□□□□ -1.26
VPS4B-203ENST00000588323 DTWD1Q8N5C7 304 aa7.19□□□□□ -1.26
VPS4B-203ENST00000588323 TRPM4Q8TD43 1214 aa7.19□□□□□ -1.26
VPS4B-203ENST00000588323 LPIN3Q9BQK8 851 aa7.19□□□□□ -1.26
VPS4B-203ENST00000588323 ZNF777Q9ULD5 760 aaPredicted RBP7.19□□□□□ -1.26
VPS4B-203ENST00000588323 ZBTB42B2RXF5 422 aa7.18□□□□□ -1.26
VPS4B-203ENST00000588323 H2AFB1P0C5Y9 115 aa7.18□□□□□ -1.26
VPS4B-203ENST00000588323 H2AFB2P0C5Z0 115 aa7.18□□□□□ -1.26
VPS4B-203ENST00000588323 WFDC8Q8IUA0 241 aa7.18□□□□□ -1.26
VPS4B-203ENST00000588323 NOVA2Q9UNW9 492 aaKnown RBP7.18□□□□□ -1.26
VPS4B-203ENST00000588323 RTCBQ9Y3I0 505 aaKnown RBP7.18□□□□□ -1.26
VPS4B-203ENST00000588323 OPLAHO14841 1288 aa7.17□□□□□ -1.26
VPS4B-203ENST00000588323 GRIK5Q16478 980 aa7.17□□□□□ -1.26
VPS4B-203ENST00000588323 ILDR2Q71H61 639 aa7.17□□□□□ -1.26
VPS4B-203ENST00000588323 FBXO11Q86XK2 927 aa7.17□□□□□ -1.26
VPS4B-203ENST00000588323 TTC9Q92623 222 aa7.17□□□□□ -1.26
VPS4B-203ENST00000588323 TP53INP1Q96A56 240 aa7.17□□□□□ -1.26
VPS4B-203ENST00000588323 EIF2AK2P19525 551 aaKnown RBP7.16□□□□□ -1.26
VPS4B-203ENST00000588323 NRLP54845 237 aa7.16□□□□□ -1.26
VPS4B-203ENST00000588323 FOXD4L6Q3SYB3 417 aaPredicted RBP7.16□□□□□ -1.26
VPS4B-203ENST00000588323 FOXD4L3Q6VB84 417 aaPredicted RBP7.16□□□□□ -1.26
VPS4B-203ENST00000588323 HFE2Q6ZVN8 426 aa7.16□□□□□ -1.26
VPS4B-203ENST00000588323 TREML1Q86YW5 311 aa7.16□□□□□ -1.26
VPS4B-203ENST00000588323 RGL4Q8IZJ4 473 aa7.16□□□□□ -1.26
VPS4B-203ENST00000588323 CMTR1Q8N1G2 835 aaKnown RBP7.16□□□□□ -1.26
VPS4B-203ENST00000588323 SMG9Q9H0W8 520 aaKnown RBP7.16□□□□□ -1.26
VPS4B-203ENST00000588323 LRFN2Q9ULH4 789 aa7.16□□□□□ -1.26
VPS4B-203ENST00000588323 USP20Q9Y2K6 914 aa7.16□□□□□ -1.26
VPS4B-203ENST00000588323 XYLBO75191 536 aa7.15□□□□□ -1.26
VPS4B-203ENST00000588323 EGFRP00533 1210 aa7.15□□□□□ -1.26
VPS4B-203ENST00000588323 PLAURQ03405 335 aa7.15□□□□□ -1.26
VPS4B-203ENST00000588323 FKBP5Q13451 457 aaPredicted RBP7.15□□□□□ -1.26
VPS4B-203ENST00000588323 PRIMPOLQ96LW4 560 aa7.15□□□□□ -1.26
VPS4B-203ENST00000588323 TLR7Q9NYK1 1049 aaKnown RBP7.15□□□□□ -1.26
VPS4B-203ENST00000588323 PSAPP07602 524 aa7.14□□□□□ -1.27
VPS4B-203ENST00000588323 SWI5Q1ZZU3 235 aa7.14□□□□□ -1.27
VPS4B-203ENST00000588323 COX20Q5RI15 118 aa7.14□□□□□ -1.27
VPS4B-203ENST00000588323 ZFP64Q9NPA5 681 aa7.14□□□□□ -1.27
VPS4B-203ENST00000588323 ACIN1Q9UKV3 1341 aaKnown RBP7.13□□□□□ -1.27
VPS4B-203ENST00000588323 PRMT3O60678 531 aa7.13□□□□□ -1.27
VPS4B-203ENST00000588323 GHRHP01286 108 aa7.13□□□□□ -1.27
VPS4B-203ENST00000588323 ARTNQ5T4W7 220 aa7.13□□□□□ -1.27
VPS4B-203ENST00000588323 IGF2-ASQ6U949 168 aa7.13□□□□□ -1.27
VPS4B-203ENST00000588323 WFDC12Q8WWY7 111 aa7.13□□□□□ -1.27
VPS4B-203ENST00000588323 SSBP4Q9BWG4 385 aaPredicted RBP7.13□□□□□ -1.27
VPS4B-203ENST00000588323 LOC102724428A0A0B4J2F2 783 aa7.12□□□□□ -1.27
VPS4B-203ENST00000588323 IREB2P48200 963 aaKnown RBP7.12□□□□□ -1.27
VPS4B-203ENST00000588323 SIK1P57059 783 aa7.12□□□□□ -1.27
VPS4B-203ENST00000588323 PLD4Q96BZ4 506 aa7.12□□□□□ -1.27
VPS4B-203ENST00000588323 RBSNQ9H1K0 784 aa7.12□□□□□ -1.27
VPS4B-203ENST00000588323 KCNMB2Q9Y691 235 aa7.12□□□□□ -1.27
VPS4B-203ENST00000588323 J3QW42 95 aa7.11□□□□□ -1.27
VPS4B-203ENST00000588323 MMP20O60882 483 aa7.11□□□□□ -1.27
VPS4B-203ENST00000588323 BRD2P25440 801 aaKnown RBP7.11□□□□□ -1.27
VPS4B-203ENST00000588323 GDF6Q6KF10 455 aaPredicted RBP7.11□□□□□ -1.27
VPS4B-203ENST00000588323 NSUN5Q96P11 429 aaKnown RBP7.11□□□□□ -1.27
VPS4B-203ENST00000588323 DEAF1O75398 565 aaPredicted RBP7.1□□□□□ -1.27
VPS4B-203ENST00000588323 NOS3P29474 1203 aa7.1□□□□□ -1.27
VPS4B-203ENST00000588323 ELOAQ14241 798 aaKnown RBP7.1□□□□□ -1.27
VPS4B-203ENST00000588323 C16orf46Q6P387 395 aa7.1□□□□□ -1.27
VPS4B-203ENST00000588323 NBPF11Q86T75 865 aa7.1□□□□□ -1.27
VPS4B-203ENST00000588323 ETFBKMTQ8IXQ9 262 aa7.1□□□□□ -1.27
VPS4B-203ENST00000588323 ZMIZ1Q9ULJ6 1067 aa7.1□□□□□ -1.27
VPS4B-203ENST00000588323 HOXD8P13378 290 aaPredicted RBP7.09□□□□□ -1.27
VPS4B-203ENST00000588323 SOX18P35713 384 aa7.09□□□□□ -1.27
VPS4B-203ENST00000588323 OCLNQ16625 522 aa7.09□□□□□ -1.27
VPS4B-203ENST00000588323 NLRP13Q86W25 1043 aa7.09□□□□□ -1.27
VPS4B-203ENST00000588323 COL26A1Q96A83 441 aa7.09□□□□□ -1.27
VPS4B-203ENST00000588323 SAP130Q9H0E3 1048 aa7.09□□□□□ -1.27
VPS4B-203ENST00000588323 FAM13BQ9NYF5 915 aa7.09□□□□□ -1.27
VPS4B-203ENST00000588323 DLL1O00548 723 aa7.08□□□□□ -1.28
VPS4B-203ENST00000588323 LRP8Q14114 963 aa7.08□□□□□ -1.28
VPS4B-203ENST00000588323 IL22RA1Q8N6P7 574 aa7.08□□□□□ -1.28
VPS4B-203ENST00000588323 DCAF11Q8TEB1 546 aa7.08□□□□□ -1.28
VPS4B-203ENST00000588323 STK32AQ8WU08 396 aa7.08□□□□□ -1.28
VPS4B-203ENST00000588323 MEGF10Q96KG7 1140 aa7.08□□□□□ -1.28
VPS4B-203ENST00000588323 PSMG3-AS1Q96PY0 264 aa7.08□□□□□ -1.28
VPS4B-203ENST00000588323 MKNK1Q9BUB5 465 aa7.08□□□□□ -1.28
VPS4B-203ENST00000588323 KRTAP4-8Q9BYQ9 185 aa7.08□□□□□ -1.28
VPS4B-203ENST00000588323 AKTIPQ9H8T0 292 aa7.08□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 10.6 ms