RNA–Protein interactions for RNA: ENST00000587988.5

SMARCA4-213, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4, humanhuman

TSL 2

Gene SMARCA4, Length 552 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA4-213ENST00000587988 BICC1Q9H694 974 aaKnown RBP13.46□□□□□ -0.25
SMARCA4-213ENST00000587988 DDX19BQ9UMR2 479 aa13.46□□□□□ -0.25
SMARCA4-213ENST00000587988 LRRFIP2Q9Y608 721 aaKnown RBP13.46□□□□□ -0.25
SMARCA4-213ENST00000587988 TAF1P21675 1872 aa13.45□□□□□ -0.26
SMARCA4-213ENST00000587988 COL4A1P02462 1669 aa13.45□□□□□ -0.26
SMARCA4-213ENST00000587988 CSF1RP07333 972 aa13.45□□□□□ -0.26
SMARCA4-213ENST00000587988 HSP90B1P14625 803 aaKnown RBP13.45□□□□□ -0.26
SMARCA4-213ENST00000587988 IRX6P78412 446 aaPredicted RBP13.45□□□□□ -0.26
SMARCA4-213ENST00000587988 ANKRD44Q8N8A2 993 aa13.45□□□□□ -0.26
SMARCA4-213ENST00000587988 ZNF622Q969S3 477 aaKnown RBP eCLIP13.45□□□□□ -0.26
SMARCA4-213ENST00000587988 MASTLQ96GX5 879 aa13.45□□□□□ -0.26
SMARCA4-213ENST00000587988 C1orf115Q9H7X2 142 aa13.45□□□□□ -0.26
SMARCA4-213ENST00000587988 WWC3Q9ULE0 1092 aa13.45□□□□□ -0.26
SMARCA4-213ENST00000587988 DLEC1Q9Y238 1755 aa13.45□□□□□ -0.26
SMARCA4-213ENST00000587988 NPR1P16066 1061 aa13.44□□□□□ -0.26
SMARCA4-213ENST00000587988 LMBR1LQ6UX01 489 aa13.44□□□□□ -0.26
SMARCA4-213ENST00000587988 GREM2Q9H772 168 aa13.44□□□□□ -0.26
SMARCA4-213ENST00000587988 SEC31BQ9NQW1 1179 aa13.44□□□□□ -0.26
SMARCA4-213ENST00000587988 ZBTB40Q9NUA8 1239 aa13.44□□□□□ -0.26
SMARCA4-213ENST00000587988 PDZRN3Q9UPQ7 1066 aa13.44□□□□□ -0.26
SMARCA4-213ENST00000587988 GNAI2P04899 355 aa13.43□□□□□ -0.26
SMARCA4-213ENST00000587988 HOXA10P31260 410 aaPredicted RBP13.43□□□□□ -0.26
SMARCA4-213ENST00000587988 BRCA1P38398 1863 aaKnown RBP13.43□□□□□ -0.26
SMARCA4-213ENST00000587988 FAM161AQ3B820 660 aa13.43□□□□□ -0.26
SMARCA4-213ENST00000587988 RABL6Q3YEC7 729 aaPredicted RBP13.43□□□□□ -0.26
SMARCA4-213ENST00000587988 CCDC152Q4G0S7 254 aa13.43□□□□□ -0.26
SMARCA4-213ENST00000587988 STYK1Q6J9G0 422 aa13.43□□□□□ -0.26
SMARCA4-213ENST00000587988 RPGRQ92834 1020 aaKnown RBP13.43□□□□□ -0.26
SMARCA4-213ENST00000587988 RBM17Q96I25 401 aaKnown RBP13.43□□□□□ -0.26
SMARCA4-213ENST00000587988 CACNA1SQ13698 1873 aa13.42□□□□□ -0.26
SMARCA4-213ENST00000587988 DDX46Q7L014 1031 aaKnown RBP13.42□□□□□ -0.26
SMARCA4-213ENST00000587988 SLC51AQ86UW1 340 aa13.42□□□□□ -0.26
SMARCA4-213ENST00000587988 EXOC6Q8TAG9 804 aa13.42□□□□□ -0.26
SMARCA4-213ENST00000587988 CELF1Q92879 486 aaKnown RBP13.42□□□□□ -0.26
SMARCA4-213ENST00000587988 CRAMP1Q96RY5 1269 aa13.42□□□□□ -0.26
SMARCA4-213ENST00000587988 PIM2Q9P1W9 311 aa13.42□□□□□ -0.26
SMARCA4-213ENST00000587988 CHMP3Q9Y3E7 222 aa13.42□□□□□ -0.26
SMARCA4-213ENST00000587988 SLX4Q8IY92 1834 aa13.41□□□□□ -0.26
SMARCA4-213ENST00000587988 ITGA6P23229 1130 aa13.41□□□□□ -0.26
SMARCA4-213ENST00000587988 TTLL6Q8N841 843 aa13.41□□□□□ -0.26
SMARCA4-213ENST00000587988 RTL9Q8NET4 1388 aa13.41□□□□□ -0.26
SMARCA4-213ENST00000587988 ALDH1B1P30837 517 aa13.4□□□□□ -0.26
SMARCA4-213ENST00000587988 GRAPQ13588 217 aa13.4□□□□□ -0.26
SMARCA4-213ENST00000587988 PRPF40BQ6NWY9 871 aaKnown RBP13.4□□□□□ -0.26
SMARCA4-213ENST00000587988 GRAPLQ8TC17 118 aaPredicted RBP13.4□□□□□ -0.26
SMARCA4-213ENST00000587988 CNKSR1Q969H4 720 aa13.4□□□□□ -0.26
SMARCA4-213ENST00000587988 ZNF594Q96JF6 807 aaPredicted RBP13.4□□□□□ -0.26
SMARCA4-213ENST00000587988 HDAC5Q9UQL6 1122 aa13.4□□□□□ -0.26
SMARCA4-213ENST00000587988 SRCAPQ6ZRS2 3230 aa13.4□□□□□ -0.26
SMARCA4-213ENST00000587988 PNMA6EA0A0J9YXQ4 647 aa13.39□□□□□ -0.27
SMARCA4-213ENST00000587988 ANKRD18BA2A2Z9 1011 aa13.39□□□□□ -0.27
SMARCA4-213ENST00000587988 RFX5P48382 616 aaPredicted RBP13.39□□□□□ -0.27
SMARCA4-213ENST00000587988 IFIT5Q13325 482 aaKnown RBP13.39□□□□□ -0.27
SMARCA4-213ENST00000587988 DALRD3Q5D0E6 543 aaKnown RBP13.39□□□□□ -0.27
SMARCA4-213ENST00000587988 OLFM4Q6UX06 510 aa13.39□□□□□ -0.27
SMARCA4-213ENST00000587988 KLHDC4Q8TBB5 520 aa13.39□□□□□ -0.27
SMARCA4-213ENST00000587988 CHMP4BQ9H444 224 aaKnown RBP13.39□□□□□ -0.27
SMARCA4-213ENST00000587988 ZNF219Q9P2Y4 722 aaPredicted RBP13.39□□□□□ -0.27
SMARCA4-213ENST00000587988 BCS1LQ9Y276 419 aa13.39□□□□□ -0.27
SMARCA4-213ENST00000587988 RPS8P62241 208 aaKnown RBP13.38□□□□□ -0.27
SMARCA4-213ENST00000587988 ATP8B2P98198 1209 aa13.38□□□□□ -0.27
SMARCA4-213ENST00000587988 MTX1Q13505 466 aa13.38□□□□□ -0.27
SMARCA4-213ENST00000587988 CCDC57Q2TAC2 916 aa13.38□□□□□ -0.27
SMARCA4-213ENST00000587988 CEP85Q6P2H3 762 aa13.38□□□□□ -0.27
SMARCA4-213ENST00000587988 SPEF2Q9C093 1822 aa13.38□□□□□ -0.27
SMARCA4-213ENST00000587988 PPEF1O14829 653 aaPredicted RBP13.37□□□□□ -0.27
SMARCA4-213ENST00000587988 SRGAP3O43295 1099 aa13.37□□□□□ -0.27
SMARCA4-213ENST00000587988 C21orf2O43822 256 aa13.37□□□□□ -0.27
SMARCA4-213ENST00000587988 BBOX1O75936 387 aa13.37□□□□□ -0.27
SMARCA4-213ENST00000587988 YBX3P16989 372 aaKnown RBP eCLIP13.37□□□□□ -0.274e-7■□□□□ 11.1
SMARCA4-213ENST00000587988 PTPN12Q05209 780 aaKnown RBP13.37□□□□□ -0.27
SMARCA4-213ENST00000587988 ANKRD18AQ8IVF6 992 aa13.37□□□□□ -0.27
SMARCA4-213ENST00000587988 SIRT2Q8IXJ6 389 aa13.37□□□□□ -0.27
SMARCA4-213ENST00000587988 PELP1Q8IZL8 1130 aaKnown RBP13.37□□□□□ -0.27
SMARCA4-213ENST00000587988 C7orf43Q8WVR3 580 aa13.37□□□□□ -0.27
SMARCA4-213ENST00000587988 CDC5LQ99459 802 aaKnown RBP13.37□□□□□ -0.27
SMARCA4-213ENST00000587988 PA2G4Q9UQ80 394 aaKnown RBP13.37□□□□□ -0.27
SMARCA4-213ENST00000587988 POLA2Q14181 598 aa13.36□□□□□ -0.27
SMARCA4-213ENST00000587988 PUS3Q9BZE2 481 aaKnown RBP13.36□□□□□ -0.27
SMARCA4-213ENST00000587988 PCDHB15Q9Y5E8 787 aa13.36□□□□□ -0.27
SMARCA4-213ENST00000587988 ARFGEF1Q9Y6D6 1849 aa13.35□□□□□ -0.27
SMARCA4-213ENST00000587988 IGHMBP2P38935 993 aaKnown RBP13.35□□□□□ -0.27
SMARCA4-213ENST00000587988 LRRC24Q50LG9 513 aa13.35□□□□□ -0.27
SMARCA4-213ENST00000587988 TAF7LQ5H9L4 462 aa13.35□□□□□ -0.27
SMARCA4-213ENST00000587988 RPAP2Q8IXW5 612 aaPredicted RBP13.35□□□□□ -0.27
SMARCA4-213ENST00000587988 SP8Q8IXZ3 490 aa13.35□□□□□ -0.27
SMARCA4-213ENST00000587988 SSH3Q8TE77 659 aa13.35□□□□□ -0.27
SMARCA4-213ENST00000587988 MPHOSPH8Q99549 860 aa13.35□□□□□ -0.27
SMARCA4-213ENST00000587988 BSDC1Q9NW68 430 aaPredicted RBP13.35□□□□□ -0.27
SMARCA4-213ENST00000587988 ATP6V0A2Q9Y487 856 aa13.35□□□□□ -0.27
SMARCA4-213ENST00000587988 LDHAL6AQ6ZMR3 332 aa13.34□□□□□ -0.27
SMARCA4-213ENST00000587988 SIL1Q9H173 461 aa13.34□□□□□ -0.27
SMARCA4-213ENST00000587988 MINPP1Q9UNW1 487 aa13.34□□□□□ -0.27
SMARCA4-213ENST00000587988 LRRC37AA6NMS7 1700 aa13.33□□□□□ -0.27
SMARCA4-213ENST00000587988 SNED1Q8TER0 1413 aa13.33□□□□□ -0.28
SMARCA4-213ENST00000587988 GPSM2P81274 684 aa13.33□□□□□ -0.28
SMARCA4-213ENST00000587988 GPR162Q16538 588 aa13.33□□□□□ -0.28
SMARCA4-213ENST00000587988 TMC4Q7Z404 712 aa13.33□□□□□ -0.28
SMARCA4-213ENST00000587988 COPRSQ9NQ92 184 aa13.33□□□□□ -0.28
SMARCA4-213ENST00000587988 CNNM1Q9NRU3 951 aa13.33□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms