RNA–Protein interactions for RNA: ENST00000586119.1

LIG3-207, Transcript of DNA ligase 3, humanhuman

TSL 3

Gene LIG3, Length 565 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-207ENST00000586119 RTFDC1Q9BY42 306 aaPredicted RBP15.23■□□□□ 0.03
LIG3-207ENST00000586119 BABAM1Q9NWV8 329 aa15.23■□□□□ 0.03
LIG3-207ENST00000586119 GPRC5DQ9NZD1 345 aa15.23■□□□□ 0.03
LIG3-207ENST00000586119 CHPF2Q9P2E5 772 aa15.23■□□□□ 0.03
LIG3-207ENST00000586119 ZNRF3Q9ULT6 936 aa15.23■□□□□ 0.03
LIG3-207ENST00000586119 COL4A1P02462 1669 aa15.22■□□□□ 0.03
LIG3-207ENST00000586119 YDJCA8MPS7 323 aa15.22■□□□□ 0.03
LIG3-207ENST00000586119 ATP5J2-PTCD1G3V325 749 aa15.22■□□□□ 0.03
LIG3-207ENST00000586119 DLK2Q6UY11 383 aa15.22■□□□□ 0.03
LIG3-207ENST00000586119 POLR2AP24928 1970 aaKnown RBP15.22■□□□□ 0.03
LIG3-207ENST00000586119 SH3TC1Q8TE82 1336 aa15.21■□□□□ 0.03
LIG3-207ENST00000586119 GRAPQ13588 217 aa15.21■□□□□ 0.03
LIG3-207ENST00000586119 HSP90AB3PQ58FF7 597 aa15.21■□□□□ 0.03
LIG3-207ENST00000586119 RTL5Q5HYW3 569 aaPredicted RBP15.21■□□□□ 0.03
LIG3-207ENST00000586119 PAXIP1Q6ZW49 1069 aaPredicted RBP15.21■□□□□ 0.03
LIG3-207ENST00000586119 DDX46Q7L014 1031 aaKnown RBP15.21■□□□□ 0.03
LIG3-207ENST00000586119 GRAPLQ8TC17 118 aaPredicted RBP15.21■□□□□ 0.03
LIG3-207ENST00000586119 FAM89AQ96GI7 184 aa15.21■□□□□ 0.03
LIG3-207ENST00000586119 CAPNS2Q96L46 248 aa15.21■□□□□ 0.03
LIG3-207ENST00000586119 GLIS2Q9BZE0 524 aaPredicted RBP15.21■□□□□ 0.03
LIG3-207ENST00000586119 TMX4Q9H1E5 349 aaPredicted RBP15.21■□□□□ 0.03
LIG3-207ENST00000586119 ADARB2Q9NS39 739 aaKnown RBP15.21■□□□□ 0.03
LIG3-207ENST00000586119 ADAMTS8Q9UP79 889 aa15.21■□□□□ 0.03
LIG3-207ENST00000586119 AOC2O75106 756 aa15.2■□□□□ 0.02
LIG3-207ENST00000586119 LMOD3Q0VAK6 560 aa15.2■□□□□ 0.02
LIG3-207ENST00000586119 KIAA2012Q0VF49 1180 aa15.2■□□□□ 0.02
LIG3-207ENST00000586119 CIAPIN1Q6FI81 312 aa15.2■□□□□ 0.02
LIG3-207ENST00000586119 SUPT20HQ8NEM7 779 aa15.2■□□□□ 0.02
LIG3-207ENST00000586119 TRPM4Q8TD43 1214 aa15.2■□□□□ 0.02
LIG3-207ENST00000586119 CELF1Q92879 486 aaKnown RBP15.2■□□□□ 0.02
LIG3-207ENST00000586119 DDX60Q8IY21 1712 aaKnown RBP15.2■□□□□ 0.02
LIG3-207ENST00000586119 HDGFL1Q5TGJ6 251 aa15.19■□□□□ 0.02
LIG3-207ENST00000586119 RUNDC1Q96C34 613 aa15.19■□□□□ 0.02
LIG3-207ENST00000586119 GPR101Q96P66 508 aaPredicted RBP15.19■□□□□ 0.02
LIG3-207ENST00000586119 ISCA1Q9BUE6 129 aa15.19■□□□□ 0.02
LIG3-207ENST00000586119 VPS33BQ9H267 617 aa15.19■□□□□ 0.02
LIG3-207ENST00000586119 KCNQ5Q9NR82 932 aa15.19■□□□□ 0.02
LIG3-207ENST00000586119 TSKSQ9UJT2 592 aa15.19■□□□□ 0.02
LIG3-207ENST00000586119 ZBTB12Q9Y330 459 aaPredicted RBP15.19■□□□□ 0.02
LIG3-207ENST00000586119 TLL2Q9Y6L7 1015 aa15.19■□□□□ 0.02
LIG3-207ENST00000586119 RIMBP2O15034 1052 aa15.18■□□□□ 0.02
LIG3-207ENST00000586119 CELF2O95319 508 aaKnown RBP15.18■□□□□ 0.02
LIG3-207ENST00000586119 ANKRD13DQ6ZTN6 518 aa15.18■□□□□ 0.02
LIG3-207ENST00000586119 PLBD2Q8NHP8 589 aa15.18■□□□□ 0.02
LIG3-207ENST00000586119 BCL2L13Q9BXK5 485 aa15.18■□□□□ 0.02
LIG3-207ENST00000586119 CNOT7Q9UIV1 285 aaKnown RBP15.18■□□□□ 0.02
LIG3-207ENST00000586119 DUOX1Q9NRD9 1551 aa15.18■□□□□ 0.02
LIG3-207ENST00000586119 MYBBP1AQ9BQG0 1328 aaKnown RBP15.17■□□□□ 0.02
LIG3-207ENST00000586119 MAP2K1Q02750 393 aaPredicted RBP15.17■□□□□ 0.02
LIG3-207ENST00000586119 DUSP27Q5VZP5 1158 aa15.17■□□□□ 0.02
LIG3-207ENST00000586119 JARID2Q92833 1246 aaPredicted RBP15.17■□□□□ 0.02
LIG3-207ENST00000586119 ZNF408Q9H9D4 720 aa15.17■□□□□ 0.02
LIG3-207ENST00000586119 DBNDD1Q9H9R9 158 aa15.17■□□□□ 0.02
LIG3-207ENST00000586119 POLLQ9UGP5 575 aa15.17■□□□□ 0.02
LIG3-207ENST00000586119 PGAP2Q9UHJ9 254 aa15.17■□□□□ 0.02
LIG3-207ENST00000586119 ELL2O00472 640 aaPredicted RBP15.16■□□□□ 0.02
LIG3-207ENST00000586119 EGFRP00533 1210 aa15.16■□□□□ 0.02
LIG3-207ENST00000586119 GPSM2P81274 684 aa15.16■□□□□ 0.02
LIG3-207ENST00000586119 SAMD7Q7Z3H4 446 aa15.16■□□□□ 0.02
LIG3-207ENST00000586119 PHAXQ9H814 394 aaKnown RBP15.16■□□□□ 0.02
LIG3-207ENST00000586119 MBIPQ9NS73 344 aa15.16■□□□□ 0.02
LIG3-207ENST00000586119 NSFL1CQ9UNZ2 370 aaKnown RBP15.16■□□□□ 0.02
LIG3-207ENST00000586119 CASP8AP2Q9UKL3 1982 aa15.15■□□□□ 0.02
LIG3-207ENST00000586119 PSMD14O00487 310 aa15.15■□□□□ 0.02
LIG3-207ENST00000586119 TNIP1Q15025 636 aa15.15■□□□□ 0.02
LIG3-207ENST00000586119 WDR43Q15061 677 aaKnown RBP eCLIP15.15■□□□□ 0.02
LIG3-207ENST00000586119 SF3B3Q15393 1217 aaKnown RBP15.15■□□□□ 0.02
LIG3-207ENST00000586119 DOK7Q18PE1 504 aa15.15■□□□□ 0.02
LIG3-207ENST00000586119 SAPCD2Q86UD0 394 aa15.15■□□□□ 0.02
LIG3-207ENST00000586119 USP48Q86UV5 1035 aa15.15■□□□□ 0.02
LIG3-207ENST00000586119 ZIC5Q96T25 663 aa15.15■□□□□ 0.02
LIG3-207ENST00000586119 ECE1P42892 770 aa15.14■□□□□ 0.01
LIG3-207ENST00000586119 WASHC4Q2M389 1173 aa15.14■□□□□ 0.01
LIG3-207ENST00000586119 MICALL2Q8IY33 904 aa15.14■□□□□ 0.01
LIG3-207ENST00000586119 ABHD8Q96I13 439 aa15.14■□□□□ 0.01
LIG3-207ENST00000586119 SEC31BQ9NQW1 1179 aa15.14■□□□□ 0.01
LIG3-207ENST00000586119 DBF4Q9UBU7 674 aaPredicted RBP15.14■□□□□ 0.01
LIG3-207ENST00000586119 LRRC37AA6NMS7 1700 aa15.14■□□□□ 0.01
LIG3-207ENST00000586119 C6orf229H3BNL8 230 aa15.13■□□□□ 0.01
LIG3-207ENST00000586119 IRS4O14654 1257 aaPredicted RBP15.13■□□□□ 0.01
LIG3-207ENST00000586119 TBC1D10BQ4KMP7 808 aaPredicted RBP15.13■□□□□ 0.01
LIG3-207ENST00000586119 RBM26Q5T8P6 1007 aaKnown RBP15.13■□□□□ 0.01
LIG3-207ENST00000586119 CFAP44Q96MT7 982 aa15.13■□□□□ 0.01
LIG3-207ENST00000586119 THSD7BQ9C0I4 1608 aa15.13■□□□□ 0.01
LIG3-207ENST00000586119 SCN9AQ15858 1988 aa15.13■□□□□ 0.01
LIG3-207ENST00000586119 H7C1D1 291 aa15.12■□□□□ 0.01
LIG3-207ENST00000586119 ZNF853P0CG23 659 aa15.12■□□□□ 0.01
LIG3-207ENST00000586119 CDC37L1Q7L3B6 337 aa15.12■□□□□ 0.01
LIG3-207ENST00000586119 CCDC85AQ96PX6 553 aaPredicted RBP15.12■□□□□ 0.01
LIG3-207ENST00000586119 HYPKQ9NX55 129 aa15.12■□□□□ 0.01
LIG3-207ENST00000586119 RTL9Q8NET4 1388 aa15.11■□□□□ 0.01
LIG3-207ENST00000586119 APAF1O14727 1248 aa15.11■□□□□ 0.01
LIG3-207ENST00000586119 ECE2O60344 883 aa15.11■□□□□ 0.01
LIG3-207ENST00000586119 HOXB7P09629 217 aa15.11■□□□□ 0.01
LIG3-207ENST00000586119 RPS8P62241 208 aaKnown RBP15.11■□□□□ 0.01
LIG3-207ENST00000586119 RIC3Q7Z5B4 369 aa15.11■□□□□ 0.01
LIG3-207ENST00000586119 TBC1D16Q8TBP0 767 aa15.11■□□□□ 0.01
LIG3-207ENST00000586119 ZC3H15Q8WU90 426 aaKnown RBP15.11■□□□□ 0.01
LIG3-207ENST00000586119 MYD88Q99836 296 aa15.11■□□□□ 0.01
LIG3-207ENST00000586119 MAP2K2P36507 400 aa15.1■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms