RNA–Protein interactions for RNA: ENST00000585941.5

LIG3-205, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,699 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-205ENST00000585941 ILDR1Q86SU0 546 aaPredicted RBP17.18■□□□□ 0.34
LIG3-205ENST00000585941 TRMT112Q9UI30 125 aaKnown RBP17.18■□□□□ 0.34
LIG3-205ENST00000585941 AKAP2Q9Y2D5 859 aa17.18■□□□□ 0.34
LIG3-205ENST00000585941 NHSQ6T4R5 1651 aa17.17■□□□□ 0.34
LIG3-205ENST00000585941 HSP90AA1P07900 732 aaKnown RBP17.17■□□□□ 0.34
LIG3-205ENST00000585941 HSPA4P34932 840 aa17.17■□□□□ 0.34
LIG3-205ENST00000585941 TAF7LQ5H9L4 462 aa17.17■□□□□ 0.34
LIG3-205ENST00000585941 CWC27Q6UX04 472 aaKnown RBP17.17■□□□□ 0.34
LIG3-205ENST00000585941 BOLA2Q9H3K6 86 aa17.17■□□□□ 0.34
LIG3-205ENST00000585941 CEP126Q9P2H0 1117 aa17.17■□□□□ 0.34
LIG3-205ENST00000585941 IRS4O14654 1257 aaPredicted RBP17.16■□□□□ 0.34
LIG3-205ENST00000585941 KCNQ2O43526 872 aa17.16■□□□□ 0.34
LIG3-205ENST00000585941 PDE8AO60658 829 aa17.16■□□□□ 0.34
LIG3-205ENST00000585941 CTSWP56202 376 aa17.16■□□□□ 0.34
LIG3-205ENST00000585941 ZNF652Q9Y2D9 606 aa17.16■□□□□ 0.34
LIG3-205ENST00000585941 DBNDD2Q9BQY9 259 aa17.16■□□□□ 0.34
LIG3-205ENST00000585941 FSD1Q9BTV5 496 aa17.16■□□□□ 0.34
LIG3-205ENST00000585941 LSG1Q9H089 658 aaKnown RBP17.16■□□□□ 0.34
LIG3-205ENST00000585941 SNRKQ9NRH2 765 aa17.16■□□□□ 0.34
LIG3-205ENST00000585941 ZNF609O15014 1411 aa17.16■□□□□ 0.34
LIG3-205ENST00000585941 SPEF2Q9C093 1822 aa17.15■□□□□ 0.34
LIG3-205ENST00000585941 CAMTA2O94983 1202 aa17.15■□□□□ 0.34
LIG3-205ENST00000585941 CD2BP2O95400 341 aaKnown RBP17.15■□□□□ 0.34
LIG3-205ENST00000585941 TTLL11Q8NHH1 800 aa17.15■□□□□ 0.34
LIG3-205ENST00000585941 GJD4Q96KN9 370 aaPredicted RBP17.15■□□□□ 0.34
LIG3-205ENST00000585941 HAUS7Q99871 368 aa17.15■□□□□ 0.34
LIG3-205ENST00000585941 CNTNAP4Q9C0A0 1308 aa17.15■□□□□ 0.34
LIG3-205ENST00000585941 BCORQ6W2J9 1755 aa17.15■□□□□ 0.34
LIG3-205ENST00000585941 BTAF1O14981 1849 aa17.15■□□□□ 0.34
LIG3-205ENST00000585941 ANKRD18BA2A2Z9 1011 aa17.14■□□□□ 0.33
LIG3-205ENST00000585941 DDIT3P35638 169 aa17.14■□□□□ 0.33
LIG3-205ENST00000585941 LRRC24Q50LG9 513 aa17.14■□□□□ 0.33
LIG3-205ENST00000585941 CLEC4GQ6UXB4 293 aa17.14■□□□□ 0.33
LIG3-205ENST00000585941 PPIL4Q8WUA2 492 aaKnown RBP eCLIP17.14■□□□□ 0.33
LIG3-205ENST00000585941 ZNF594Q96JF6 807 aaPredicted RBP17.14■□□□□ 0.33
LIG3-205ENST00000585941 HSPA1LP34931 641 aa17.13■□□□□ 0.33
LIG3-205ENST00000585941 SPRYD3Q8NCJ5 442 aa17.13■□□□□ 0.33
LIG3-205ENST00000585941 NEUROD6Q96NK8 337 aa17.13■□□□□ 0.33
LIG3-205ENST00000585941 IL25Q9H293 177 aa17.13■□□□□ 0.33
LIG3-205ENST00000585941 UBN2Q6ZU65 1347 aa17.13■□□□□ 0.33
LIG3-205ENST00000585941 SH3TC1Q8TE82 1336 aa17.13■□□□□ 0.33
LIG3-205ENST00000585941 ONECUT3O60422 494 aaPredicted RBP17.13■□□□□ 0.33
LIG3-205ENST00000585941 NEK4P51957 841 aa17.13■□□□□ 0.33
LIG3-205ENST00000585941 RC3H1Q5TC82 1133 aaKnown RBP17.13■□□□□ 0.33
LIG3-205ENST00000585941 UTP14AQ9BVJ6 771 aaKnown RBP17.13■□□□□ 0.33
LIG3-205ENST00000585941 TRPC5Q9UL62 973 aaPredicted RBP17.13■□□□□ 0.33
LIG3-205ENST00000585941 AFF2P51816 1311 aa17.13■□□□□ 0.33
LIG3-205ENST00000585941 LAMB2P55268 1798 aa17.12■□□□□ 0.33
LIG3-205ENST00000585941 ATRNO75882 1429 aa17.12■□□□□ 0.33
LIG3-205ENST00000585941 A0A1B0GUL7 405 aa17.12■□□□□ 0.33
LIG3-205ENST00000585941 ITGA6P23229 1130 aa17.12■□□□□ 0.33
LIG3-205ENST00000585941 NMIQ13287 307 aaPredicted RBP17.11■□□□□ 0.33
LIG3-205ENST00000585941 PUS3Q9BZE2 481 aaKnown RBP17.11■□□□□ 0.33
LIG3-205ENST00000585941 PALD1Q9ULE6 856 aa17.11■□□□□ 0.33
LIG3-205ENST00000585941 CCDC171Q6TFL3 1326 aa17.11■□□□□ 0.33
LIG3-205ENST00000585941 TIMM10P62072 90 aa17.1■□□□□ 0.33
LIG3-205ENST00000585941 CCDC158Q5M9N0 1113 aa17.1■□□□□ 0.33
LIG3-205ENST00000585941 LDHAL6AQ6ZMR3 332 aa17.1■□□□□ 0.33
LIG3-205ENST00000585941 LINC00116Q8NCU8 138 aa17.1■□□□□ 0.33
LIG3-205ENST00000585941 GREM2Q9H772 168 aa17.1■□□□□ 0.33
LIG3-205ENST00000585941 CWC22Q9HCG8 908 aaKnown RBP17.1■□□□□ 0.33
LIG3-205ENST00000585941 SBF2Q86WG5 1849 aa17.1■□□□□ 0.33
LIG3-205ENST00000585941 ABCC12Q96J65 1359 aa17.1■□□□□ 0.33
LIG3-205ENST00000585941 SUSD4Q5VX71 490 aa17.1■□□□□ 0.33
LIG3-205ENST00000585941 SYNE4Q8N205 404 aa17.1■□□□□ 0.33
LIG3-205ENST00000585941 KBTBD3Q8NAB2 608 aa17.1■□□□□ 0.33
LIG3-205ENST00000585941 RIPOR2Q9Y4F9 1068 aa17.1■□□□□ 0.33
LIG3-205ENST00000585941 LRRFIP1Q32MZ4 808 aaKnown RBP17.09■□□□□ 0.33
LIG3-205ENST00000585941 KCNB2Q92953 911 aa17.09■□□□□ 0.33
LIG3-205ENST00000585941 DNAJC2Q99543 621 aaKnown RBP17.09■□□□□ 0.33
LIG3-205ENST00000585941 NIP7Q9Y221 180 aaKnown RBP eCLIP17.09■□□□□ 0.33
LIG3-205ENST00000585941 SNX14Q9Y5W7 946 aa17.09■□□□□ 0.33
LIG3-205ENST00000585941 RTL9Q8NET4 1388 aa17.09■□□□□ 0.33
LIG3-205ENST00000585941 MED23Q9ULK4 1368 aa17.09■□□□□ 0.33
LIG3-205ENST00000585941 LY75O60449 1722 aa17.09■□□□□ 0.33
LIG3-205ENST00000585941 LRP5O75197 1615 aa17.08■□□□□ 0.32
LIG3-205ENST00000585941 FRAT2O75474 233 aaPredicted RBP17.08■□□□□ 0.32
LIG3-205ENST00000585941 IFIT1P09914 478 aaKnown RBP17.08■□□□□ 0.32
LIG3-205ENST00000585941 METTL24Q5JXM2 366 aa17.08■□□□□ 0.32
LIG3-205ENST00000585941 GORABQ5T7V8 394 aa17.08■□□□□ 0.32
LIG3-205ENST00000585941 MAP4K1Q92918 833 aa17.08■□□□□ 0.32
LIG3-205ENST00000585941 FAM227BQ96M60 508 aa17.08■□□□□ 0.32
LIG3-205ENST00000585941 TM6SF1Q9BZW5 370 aa17.08■□□□□ 0.32
LIG3-205ENST00000585941 CNNM1Q9NRU3 951 aa17.08■□□□□ 0.32
LIG3-205ENST00000585941 PAG1Q9NWQ8 432 aa17.08■□□□□ 0.32
LIG3-205ENST00000585941 DDX60Q8IY21 1712 aaKnown RBP17.08■□□□□ 0.32
LIG3-205ENST00000585941 SCN7AQ01118 1682 aa17.08■□□□□ 0.32
LIG3-205ENST00000585941 ZKSCAN1P17029 563 aaPredicted RBP17.07■□□□□ 0.32
LIG3-205ENST00000585941 RNF20Q5VTR2 975 aa17.07■□□□□ 0.32
LIG3-205ENST00000585941 CCDC85AQ96PX6 553 aaPredicted RBP17.07■□□□□ 0.32
LIG3-205ENST00000585941 RIC1Q4ADV7 1423 aa17.07■□□□□ 0.32
LIG3-205ENST00000585941 MROH5Q6ZUA9 1318 aa17.07■□□□□ 0.32
LIG3-205ENST00000585941 A0A0D9SFI3 127 aa17.07■□□□□ 0.32
LIG3-205ENST00000585941 RPS6KA4O75676 772 aa17.07■□□□□ 0.32
LIG3-205ENST00000585941 NTSR2O95665 410 aa17.07■□□□□ 0.32
LIG3-205ENST00000585941 ATP2B3Q16720 1220 aa17.07■□□□□ 0.32
LIG3-205ENST00000585941 CCDC152Q4G0S7 254 aa17.07■□□□□ 0.32
LIG3-205ENST00000585941 KCNJ4P48050 445 aa17.06■□□□□ 0.32
LIG3-205ENST00000585941 PTH1RQ03431 593 aa17.06■□□□□ 0.32
LIG3-205ENST00000585941 NECTIN1Q15223 517 aa17.06■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 41.9 ms