RNA–Protein interactions for RNA: ENST00000584897.5

SMCHD1-211, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 2

Gene SMCHD1, Length 4,143 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-211ENST00000584897 CFAP74Q9C0B2 1584 aa3.04□□□□□ -1.92
SMCHD1-211ENST00000584897 ABCA9Q8IUA7 1624 aa3.03□□□□□ -1.92
SMCHD1-211ENST00000584897 MROH2AA6NES4 1674 aa3.03□□□□□ -1.92
SMCHD1-211ENST00000584897 TDRD9Q8NDG6 1382 aaKnown RBP3.03□□□□□ -1.92
SMCHD1-211ENST00000584897 NEURL1BA8MQ27 555 aa3.03□□□□□ -1.92
SMCHD1-211ENST00000584897 CCINQ13939 588 aa3.03□□□□□ -1.92
SMCHD1-211ENST00000584897 WFDC8Q8IUA0 241 aa3.03□□□□□ -1.92
SMCHD1-211ENST00000584897 SLC9A9Q8IVB4 645 aa3.03□□□□□ -1.92
SMCHD1-211ENST00000584897 TPCN2Q8NHX9 752 aa3.03□□□□□ -1.92
SMCHD1-211ENST00000584897 RAB6BQ9NRW1 208 aa3.03□□□□□ -1.92
SMCHD1-211ENST00000584897 BIVM-ERCC5R4GMW8 1640 aa3.03□□□□□ -1.92
SMCHD1-211ENST00000584897 MAPTP10636 758 aaKnown RBP3.03□□□□□ -1.92
SMCHD1-211ENST00000584897 TNP2Q05952 138 aa3.03□□□□□ -1.92
SMCHD1-211ENST00000584897 TTC39BQ5VTQ0 682 aaPredicted RBP3.03□□□□□ -1.92
SMCHD1-211ENST00000584897 GPR161Q8N6U8 529 aaKnown RBP3.03□□□□□ -1.92
SMCHD1-211ENST00000584897 TTC9Q92623 222 aa3.03□□□□□ -1.92
SMCHD1-211ENST00000584897 ETNK1Q9HBU6 452 aa3.03□□□□□ -1.92
SMCHD1-211ENST00000584897 FRRS1LQ9P0K9 344 aa3.03□□□□□ -1.92
SMCHD1-211ENST00000584897 SLAIN2Q9P270 581 aa3.03□□□□□ -1.92
SMCHD1-211ENST00000584897 SIGLEC1Q9BZZ2 1709 aa3.03□□□□□ -1.92
SMCHD1-211ENST00000584897 KIAA0556O60303 1618 aa3.03□□□□□ -1.92
SMCHD1-211ENST00000584897 BAG6P46379 1132 aa3.03□□□□□ -1.93
SMCHD1-211ENST00000584897 PCGF6Q9BYE7 350 aa3.03□□□□□ -1.93
SMCHD1-211ENST00000584897 MKRN1Q9UHC7 482 aaKnown RBP3.03□□□□□ -1.93
SMCHD1-211ENST00000584897 NEO1Q92859 1461 aa3.02□□□□□ -1.93
SMCHD1-211ENST00000584897 CDK12Q9NYV4 1490 aaPredicted RBP3.02□□□□□ -1.93
SMCHD1-211ENST00000584897 ATAD2Q6PL18 1390 aa3.02□□□□□ -1.93
SMCHD1-211ENST00000584897 HIRAP54198 1017 aaPredicted RBP3.02□□□□□ -1.93
SMCHD1-211ENST00000584897 TBC1D8BQ0IIM8 1120 aa3.02□□□□□ -1.93
SMCHD1-211ENST00000584897 ELMSAN1Q6PJG2 1045 aa3.02□□□□□ -1.93
SMCHD1-211ENST00000584897 PROSER2Q86WR7 435 aaPredicted RBP3.02□□□□□ -1.93
SMCHD1-211ENST00000584897 L3MBTL2Q969R5 705 aa3.02□□□□□ -1.93
SMCHD1-211ENST00000584897 OCSTAMPQ9BR26 566 aa3.02□□□□□ -1.93
SMCHD1-211ENST00000584897 PPP4R2Q9NY27 417 aa3.02□□□□□ -1.93
SMCHD1-211ENST00000584897 SCHIP1Q9P0W5 487 aaPredicted RBP3.02□□□□□ -1.93
SMCHD1-211ENST00000584897 SYNMO15061 1565 aa3.02□□□□□ -1.93
SMCHD1-211ENST00000584897 TMEM88BA6NKF7 163 aa3.02□□□□□ -1.93
SMCHD1-211ENST00000584897 CFAP70Q5T0N1 1121 aa3.02□□□□□ -1.93
SMCHD1-211ENST00000584897 HDGFL1Q5TGJ6 251 aa3.02□□□□□ -1.93
SMCHD1-211ENST00000584897 CHSY3Q70JA7 882 aa3.02□□□□□ -1.93
SMCHD1-211ENST00000584897 ZNF358Q9NW07 568 aa3.02□□□□□ -1.93
SMCHD1-211ENST00000584897 EEA1Q15075 1411 aa3.02□□□□□ -1.93
SMCHD1-211ENST00000584897 SFI1A8K8P3 1242 aa3.02□□□□□ -1.93
SMCHD1-211ENST00000584897 MAP3K6O95382 1288 aa3.02□□□□□ -1.93
SMCHD1-211ENST00000584897 BRD2P25440 801 aaKnown RBP3.02□□□□□ -1.93
SMCHD1-211ENST00000584897 SPEM2Q0P670 501 aa3.02□□□□□ -1.93
SMCHD1-211ENST00000584897 C11orf91Q3C1V1 193 aa3.02□□□□□ -1.93
SMCHD1-211ENST00000584897 CCDC82Q8N4S0 544 aa3.02□□□□□ -1.93
SMCHD1-211ENST00000584897 EPS8L1Q8TE68 723 aa3.02□□□□□ -1.93
SMCHD1-211ENST00000584897 ABHD17AQ96GS6 310 aa3.02□□□□□ -1.93
SMCHD1-211ENST00000584897 CCDC88BA6NC98 1476 aa3.02□□□□□ -1.93
SMCHD1-211ENST00000584897 FANCAO15360 1455 aa3.02□□□□□ -1.93
SMCHD1-211ENST00000584897 WDR7Q9Y4E6 1490 aa3.02□□□□□ -1.93
SMCHD1-211ENST00000584897 NCOA1Q15788 1441 aa3.01□□□□□ -1.93
SMCHD1-211ENST00000584897 PLA2R1Q13018 1463 aa3.01□□□□□ -1.93
SMCHD1-211ENST00000584897 GPR25O00155 361 aa3.01□□□□□ -1.93
SMCHD1-211ENST00000584897 SART1O43290 800 aaKnown RBP3.01□□□□□ -1.93
SMCHD1-211ENST00000584897 KCNQ4P56696 695 aa3.01□□□□□ -1.93
SMCHD1-211ENST00000584897 HYAL2Q12891 473 aa3.01□□□□□ -1.93
SMCHD1-211ENST00000584897 INTS5Q6P9B9 1019 aaKnown RBP3.01□□□□□ -1.93
SMCHD1-211ENST00000584897 LRRC69Q6ZNQ3 347 aa3.01□□□□□ -1.93
SMCHD1-211ENST00000584897 OGFOD1Q8N543 542 aa3.01□□□□□ -1.93
SMCHD1-211ENST00000584897 GTF3C5Q9Y5Q8 519 aaPredicted RBP3.01□□□□□ -1.93
SMCHD1-211ENST00000584897 SETD1AO15047 1707 aaKnown RBP3.01□□□□□ -1.93
SMCHD1-211ENST00000584897 MAGI2Q86UL8 1455 aa3.01□□□□□ -1.93
SMCHD1-211ENST00000584897 EFCAB5A4FU69 1503 aa3.01□□□□□ -1.93
SMCHD1-211ENST00000584897 USP17L3A6NCW0 530 aa3.01□□□□□ -1.93
SMCHD1-211ENST00000584897 USP17L4A6NCW7 530 aa3.01□□□□□ -1.93
SMCHD1-211ENST00000584897 PAX4O43316 350 aa3.01□□□□□ -1.93
SMCHD1-211ENST00000584897 ADH7P40394 386 aa3.01□□□□□ -1.93
SMCHD1-211ENST00000584897 USP17L2Q6R6M4 530 aa3.01□□□□□ -1.93
SMCHD1-211ENST00000584897 USP17L1Q7RTZ2 530 aa3.01□□□□□ -1.93
SMCHD1-211ENST00000584897 PHACTR1Q9C0D0 580 aa3.01□□□□□ -1.93
SMCHD1-211ENST00000584897 ALG2Q9H553 416 aa3.01□□□□□ -1.93
SMCHD1-211ENST00000584897 SERPINA10Q9UK55 444 aa3.01□□□□□ -1.93
SMCHD1-211ENST00000584897 TGFBR3LH3BV60 316 aa3.01□□□□□ -1.93
SMCHD1-211ENST00000584897 SMNDC1O75940 238 aaKnown RBP eCLIP3.01□□□□□ -1.937e-8■□□□□ 8.7
SMCHD1-211ENST00000584897 H2AFB1P0C5Y9 115 aa3.01□□□□□ -1.93
SMCHD1-211ENST00000584897 H2AFB2P0C5Z0 115 aa3.01□□□□□ -1.93
SMCHD1-211ENST00000584897 PLAURQ03405 335 aa3.01□□□□□ -1.93
SMCHD1-211ENST00000584897 SUZ12Q15022 739 aaKnown RBP3.01□□□□□ -1.93
SMCHD1-211ENST00000584897 UCN2Q96RP3 112 aa3.01□□□□□ -1.93
SMCHD1-211ENST00000584897 BRD7Q9NPI1 651 aa3.01□□□□□ -1.93
SMCHD1-211ENST00000584897 USP21Q9UK80 565 aa3.01□□□□□ -1.93
SMCHD1-211ENST00000584897 NHSL1Q5SYE7 1610 aa3.01□□□□□ -1.93
SMCHD1-211ENST00000584897 RNF17Q9BXT8 1623 aaKnown RBP3.01□□□□□ -1.93
SMCHD1-211ENST00000584897 SETD1BQ9UPS6 1966 aaKnown RBP3.01□□□□□ -1.93
SMCHD1-211ENST00000584897 SENP3-EIF4A1A0A087X0R7 540 aa3□□□□□ -1.93
SMCHD1-211ENST00000584897 BNIP3LO60238 219 aa3□□□□□ -1.93
SMCHD1-211ENST00000584897 ELNP15502 786 aa3□□□□□ -1.93
SMCHD1-211ENST00000584897 SYT9Q86SS6 491 aa3□□□□□ -1.93
SMCHD1-211ENST00000584897 TNFRSF25Q93038 417 aa3□□□□□ -1.93
SMCHD1-211ENST00000584897 PLVAPQ9BX97 442 aa3□□□□□ -1.93
SMCHD1-211ENST00000584897 CNTNAP5Q8WYK1 1306 aa3□□□□□ -1.93
SMCHD1-211ENST00000584897 RBM10P98175 930 aaKnown RBP3□□□□□ -1.93
SMCHD1-211ENST00000584897 NCOA4Q13772 614 aa3□□□□□ -1.93
SMCHD1-211ENST00000584897 SWI5Q1ZZU3 235 aa3□□□□□ -1.93
SMCHD1-211ENST00000584897 PHLDB3Q6NSJ2 640 aa3□□□□□ -1.93
SMCHD1-211ENST00000584897 ANKMY2Q8IV38 441 aa3□□□□□ -1.93
SMCHD1-211ENST00000584897 SIX5Q8N196 739 aa3□□□□□ -1.93
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms