RNA–Protein interactions for RNA: ENST00000583780.1

SHMT1-210, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best)

Gene SHMT1, Length 332 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-210ENST00000583780 MPNDQ8N594 471 aa28.72■■■□□ 2.19
SHMT1-210ENST00000583780 HCLS1P14317 486 aaPredicted RBP28.71■■■□□ 2.19
SHMT1-210ENST00000583780 CIAPIN1Q6FI81 312 aa28.71■■■□□ 2.19
SHMT1-210ENST00000583780 DPP8Q6V1X1 898 aaPredicted RBP28.71■■■□□ 2.19
SHMT1-210ENST00000583780 NLRP10Q86W26 655 aa28.71■■■□□ 2.19
SHMT1-210ENST00000583780 RGS19P49795 217 aa28.7■■■□□ 2.18
SHMT1-210ENST00000583780 COPS6Q7L5N1 327 aa28.7■■■□□ 2.18
SHMT1-210ENST00000583780 HHIPL1Q96JK4 782 aa28.7■■■□□ 2.18
SHMT1-210ENST00000583780 RAD17O75943 681 aa28.69■■■□□ 2.18
SHMT1-210ENST00000583780 ZC3H15Q8WU90 426 aaKnown RBP28.69■■■□□ 2.18
SHMT1-210ENST00000583780 PNNQ9H307 717 aaKnown RBP28.69■■■□□ 2.18
SHMT1-210ENST00000583780 POLR2AP24928 1970 aaKnown RBP28.68■■■□□ 2.18
SHMT1-210ENST00000583780 SHTN1A0MZ66 631 aa28.68■■■□□ 2.18
SHMT1-210ENST00000583780 CCDC85CA6NKD9 419 aa28.68■■■□□ 2.18
SHMT1-210ENST00000583780 YDJCA8MPS7 323 aa28.68■■■□□ 2.18
SHMT1-210ENST00000583780 RIPK4P57078 832 aa28.67■■■□□ 2.18
SHMT1-210ENST00000583780 TCIRG1Q13488 830 aa28.67■■■□□ 2.18
SHMT1-210ENST00000583780 TRPM4Q8TD43 1214 aa28.67■■■□□ 2.18
SHMT1-210ENST00000583780 BABAM1Q9NWV8 329 aa28.67■■■□□ 2.18
SHMT1-210ENST00000583780 CNOT7Q9UIV1 285 aaKnown RBP28.67■■■□□ 2.18
SHMT1-210ENST00000583780 MAPK8IP3Q9UPT6 1336 aa28.67■■■□□ 2.18
SHMT1-210ENST00000583780 AIMP1Q12904 312 aaKnown RBP28.66■■■□□ 2.18
SHMT1-210ENST00000583780 TNIP1Q15025 636 aa28.66■■■□□ 2.18
SHMT1-210ENST00000583780 XAGE3Q8WTP9 111 aa28.66■■■□□ 2.18
SHMT1-210ENST00000583780 BCL2L13Q9BXK5 485 aa28.66■■■□□ 2.18
SHMT1-210ENST00000583780 CDHR2Q9BYE9 1310 aa28.66■■■□□ 2.18
SHMT1-210ENST00000583780 GRAPQ13588 217 aa28.65■■■□□ 2.18
SHMT1-210ENST00000583780 HSP90AB3PQ58FF7 597 aa28.65■■■□□ 2.18
SHMT1-210ENST00000583780 DDX46Q7L014 1031 aaKnown RBP28.65■■■□□ 2.18
SHMT1-210ENST00000583780 CDC37L1Q7L3B6 337 aa28.65■■■□□ 2.18
SHMT1-210ENST00000583780 GRAPLQ8TC17 118 aaPredicted RBP28.65■■■□□ 2.18
SHMT1-210ENST00000583780 NECTIN2Q92692 538 aa28.65■■■□□ 2.18
SHMT1-210ENST00000583780 TRMT112Q9UI30 125 aaKnown RBP28.64■■■□□ 2.18
SHMT1-210ENST00000583780 SLC34A2O95436 690 aa28.63■■■□□ 2.17
SHMT1-210ENST00000583780 DLK2Q6UY11 383 aa28.63■■■□□ 2.17
SHMT1-210ENST00000583780 ZIC5Q96T25 663 aa28.63■■■□□ 2.17
SHMT1-210ENST00000583780 DUOX1Q9NRD9 1551 aa28.62■■■□□ 2.17
SHMT1-210ENST00000583780 BRPF1P55201 1214 aaPredicted RBP28.62■■■□□ 2.17
SHMT1-210ENST00000583780 ZNF408Q9H9D4 720 aa28.62■■■□□ 2.17
SHMT1-210ENST00000583780 SH3TC1Q8TE82 1336 aa28.62■■■□□ 2.17
SHMT1-210ENST00000583780 CA12O43570 354 aa28.61■■■□□ 2.17
SHMT1-210ENST00000583780 TMPOP42166 694 aaKnown RBP28.6■■■□□ 2.17
SHMT1-210ENST00000583780 MLLT1Q03111 559 aaPredicted RBP28.6■■■□□ 2.17
SHMT1-210ENST00000583780 USP48Q86UV5 1035 aa28.6■■■□□ 2.17
SHMT1-210ENST00000583780 ZNF428Q96B54 188 aa28.6■■■□□ 2.17
SHMT1-210ENST00000583780 MCOLN1Q9GZU1 580 aa28.6■■■□□ 2.17
SHMT1-210ENST00000583780 ZBTB12Q9Y330 459 aaPredicted RBP28.6■■■□□ 2.17
SHMT1-210ENST00000583780 H7C1D1 291 aa28.59■■■□□ 2.17
SHMT1-210ENST00000583780 KRT24Q2M2I5 525 aa28.59■■■□□ 2.17
SHMT1-210ENST00000583780 LRRC37AA6NMS7 1700 aa28.58■■■□□ 2.17
SHMT1-210ENST00000583780 DDX60Q8IY21 1712 aaKnown RBP28.58■■■□□ 2.17
SHMT1-210ENST00000583780 SAMD7Q7Z3H4 446 aa28.58■■■□□ 2.17
SHMT1-210ENST00000583780 TMC4Q7Z404 712 aa28.58■■■□□ 2.17
SHMT1-210ENST00000583780 MICALL2Q8IY33 904 aa28.58■■■□□ 2.17
SHMT1-210ENST00000583780 DPF2Q92785 391 aa28.58■■■□□ 2.17
SHMT1-210ENST00000583780 PSMD14O00487 310 aa28.56■■■□□ 2.16
SHMT1-210ENST00000583780 CHL1O00533 1208 aa28.56■■■□□ 2.16
SHMT1-210ENST00000583780 CELF1Q92879 486 aaKnown RBP28.56■■■□□ 2.16
SHMT1-210ENST00000583780 EGFRP00533 1210 aa28.55■■■□□ 2.16
SHMT1-210ENST00000583780 SF3B3Q15393 1217 aaKnown RBP28.55■■■□□ 2.16
SHMT1-210ENST00000583780 WASHC4Q2M389 1173 aa28.55■■■□□ 2.16
SHMT1-210ENST00000583780 ISCA1Q9BUE6 129 aa28.55■■■□□ 2.16
SHMT1-210ENST00000583780 KCNQ5Q9NR82 932 aa28.55■■■□□ 2.16
SHMT1-210ENST00000583780 POLLQ9UGP5 575 aa28.55■■■□□ 2.16
SHMT1-210ENST00000583780 COL4A1P02462 1669 aa28.54■■■□□ 2.16
SHMT1-210ENST00000583780 NOGQ13253 232 aa28.54■■■□□ 2.16
SHMT1-210ENST00000583780 DBNDD1Q9H9R9 158 aa28.54■■■□□ 2.16
SHMT1-210ENST00000583780 NSFL1CQ9UNZ2 370 aaKnown RBP28.54■■■□□ 2.16
SHMT1-210ENST00000583780 HUNKP57058 714 aa28.53■■■□□ 2.16
SHMT1-210ENST00000583780 FAM89AQ96GI7 184 aa28.53■■■□□ 2.16
SHMT1-210ENST00000583780 CHPF2Q9P2E5 772 aa28.53■■■□□ 2.16
SHMT1-210ENST00000583780 FAM155AB1AL88 458 aaPredicted RBP28.52■■■□□ 2.16
SHMT1-210ENST00000583780 RIMBP2O15034 1052 aa28.52■■■□□ 2.16
SHMT1-210ENST00000583780 ANKRD13DQ6ZTN6 518 aa28.52■■■□□ 2.16
SHMT1-210ENST00000583780 PLBD2Q8NHP8 589 aa28.52■■■□□ 2.16
SHMT1-210ENST00000583780 GPSM2P81274 684 aa28.51■■■□□ 2.15
SHMT1-210ENST00000583780 LMOD3Q0VAK6 560 aa28.51■■■□□ 2.15
SHMT1-210ENST00000583780 TBC1D10BQ4KMP7 808 aaPredicted RBP28.51■■■□□ 2.15
SHMT1-210ENST00000583780 DGKZQ13574 1117 aa28.5■■■□□ 2.15
SHMT1-210ENST00000583780 ATP5J2-PTCD1G3V325 749 aa28.49■■■□□ 2.15
SHMT1-210ENST00000583780 RGMBQ6NW40 437 aa28.49■■■□□ 2.15
SHMT1-210ENST00000583780 KRT26Q7Z3Y9 468 aa28.49■■■□□ 2.15
SHMT1-210ENST00000583780 TRIM35Q9UPQ4 493 aa28.49■■■□□ 2.15
SHMT1-210ENST00000583780 RTL9Q8NET4 1388 aa28.49■■■□□ 2.15
SHMT1-210ENST00000583780 SCN9AQ15858 1988 aa28.48■■■□□ 2.15
SHMT1-210ENST00000583780 C6orf229H3BNL8 230 aa28.48■■■□□ 2.15
SHMT1-210ENST00000583780 NEUROD2Q15784 382 aa28.48■■■□□ 2.15
SHMT1-210ENST00000583780 DOK7Q18PE1 504 aa28.48■■■□□ 2.15
SHMT1-210ENST00000583780 RBM26Q5T8P6 1007 aaKnown RBP28.47■■■□□ 2.15
SHMT1-210ENST00000583780 GBA2Q9HCG7 927 aaPredicted RBP28.47■■■□□ 2.15
SHMT1-210ENST00000583780 ADM5C9JUS6 153 aa28.46■■■□□ 2.15
SHMT1-210ENST00000583780 ECE2O60344 883 aa28.46■■■□□ 2.15
SHMT1-210ENST00000583780 RPS12P25398 132 aaKnown RBP28.46■■■□□ 2.15
SHMT1-210ENST00000583780 TBC1D16Q8TBP0 767 aa28.46■■■□□ 2.15
SHMT1-210ENST00000583780 KIF23Q02241 960 aaPredicted RBP28.45■■■□□ 2.14
SHMT1-210ENST00000583780 TRIM28Q13263 835 aaKnown RBP28.45■■■□□ 2.14
SHMT1-210ENST00000583780 RTL5Q5HYW3 569 aaPredicted RBP28.45■■■□□ 2.14
SHMT1-210ENST00000583780 CCDC146Q8IYE0 955 aa28.45■■■□□ 2.14
SHMT1-210ENST00000583780 LAS1LQ9Y4W2 734 aaKnown RBP28.45■■■□□ 2.14
SHMT1-210ENST00000583780 RPS8P62241 208 aaKnown RBP28.44■■■□□ 2.14
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms