RNA–Protein interactions for RNA: ENST00000582792.5

SS18-222, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 531 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-222ENST00000582792 MPNDQ8N594 471 aa17.8■□□□□ 0.44
SS18-222ENST00000582792 PGAP2Q9UHJ9 254 aa17.8■□□□□ 0.44
SS18-222ENST00000582792 HCLS1P14317 486 aaPredicted RBP17.79■□□□□ 0.44
SS18-222ENST00000582792 MAP2K2P36507 400 aa17.79■□□□□ 0.44
SS18-222ENST00000582792 CELF2O95319 508 aaKnown RBP17.78■□□□□ 0.44
SS18-222ENST00000582792 LMOD3Q0VAK6 560 aa17.78■□□□□ 0.44
SS18-222ENST00000582792 AIMP1Q12904 312 aaKnown RBP17.78■□□□□ 0.44
SS18-222ENST00000582792 TCIRG1Q13488 830 aa17.78■□□□□ 0.44
SS18-222ENST00000582792 GRAPQ13588 217 aa17.78■□□□□ 0.44
SS18-222ENST00000582792 TNIP1Q15025 636 aa17.78■□□□□ 0.44
SS18-222ENST00000582792 DDX46Q7L014 1031 aaKnown RBP17.78■□□□□ 0.44
SS18-222ENST00000582792 SAPCD2Q86UD0 394 aa17.78■□□□□ 0.44
SS18-222ENST00000582792 GRAPLQ8TC17 118 aaPredicted RBP17.78■□□□□ 0.44
SS18-222ENST00000582792 XAGE3Q8WTP9 111 aa17.78■□□□□ 0.44
SS18-222ENST00000582792 SH3TC1Q8TE82 1336 aa17.77■□□□□ 0.44
SS18-222ENST00000582792 AOC2O75106 756 aa17.77■□□□□ 0.44
SS18-222ENST00000582792 RAD17O75943 681 aa17.77■□□□□ 0.44
SS18-222ENST00000582792 TMPOP42166 694 aaKnown RBP17.77■□□□□ 0.44
SS18-222ENST00000582792 ZC3H15Q8WU90 426 aaKnown RBP17.77■□□□□ 0.44
SS18-222ENST00000582792 NECTIN2Q92692 538 aa17.77■□□□□ 0.44
SS18-222ENST00000582792 HHIPL1Q96JK4 782 aa17.77■□□□□ 0.44
SS18-222ENST00000582792 BCL2L13Q9BXK5 485 aa17.77■□□□□ 0.44
SS18-222ENST00000582792 GLIS2Q9BZE0 524 aaPredicted RBP17.77■□□□□ 0.44
SS18-222ENST00000582792 TRMT112Q9UI30 125 aaKnown RBP17.77■□□□□ 0.44
SS18-222ENST00000582792 LRRC37AA6NMS7 1700 aa17.76■□□□□ 0.43
SS18-222ENST00000582792 DUOX1Q9NRD9 1551 aa17.76■□□□□ 0.43
SS18-222ENST00000582792 HIRAP54198 1017 aaPredicted RBP17.76■□□□□ 0.43
SS18-222ENST00000582792 TMC4Q7Z404 712 aa17.76■□□□□ 0.43
SS18-222ENST00000582792 TAF1P21675 1872 aa17.75■□□□□ 0.43
SS18-222ENST00000582792 YDJCA8MPS7 323 aa17.74■□□□□ 0.43
SS18-222ENST00000582792 CA12O43570 354 aa17.74■□□□□ 0.43
SS18-222ENST00000582792 CDC37L1Q7L3B6 337 aa17.74■□□□□ 0.43
SS18-222ENST00000582792 TRPM4Q8TD43 1214 aa17.74■□□□□ 0.43
SS18-222ENST00000582792 CNOT7Q9UIV1 285 aaKnown RBP17.74■□□□□ 0.43
SS18-222ENST00000582792 TSKSQ9UJT2 592 aa17.74■□□□□ 0.43
SS18-222ENST00000582792 DDX60Q8IY21 1712 aaKnown RBP17.74■□□□□ 0.43
SS18-222ENST00000582792 ZNF408Q9H9D4 720 aa17.73■□□□□ 0.43
SS18-222ENST00000582792 H7C1D1 291 aa17.72■□□□□ 0.43
SS18-222ENST00000582792 CHL1O00533 1208 aa17.72■□□□□ 0.43
SS18-222ENST00000582792 BRPF1P55201 1214 aaPredicted RBP17.72■□□□□ 0.43
SS18-222ENST00000582792 KRT24Q2M2I5 525 aa17.72■□□□□ 0.43
SS18-222ENST00000582792 FAM161AQ3B820 660 aa17.72■□□□□ 0.43
SS18-222ENST00000582792 CHPF2Q9P2E5 772 aa17.72■□□□□ 0.43
SS18-222ENST00000582792 SHTN1A0MZ66 631 aa17.71■□□□□ 0.43
SS18-222ENST00000582792 CCDC85CA6NKD9 419 aa17.71■□□□□ 0.43
SS18-222ENST00000582792 RALBP1Q15311 655 aa17.71■□□□□ 0.43
SS18-222ENST00000582792 MICALL2Q8IY33 904 aa17.71■□□□□ 0.43
SS18-222ENST00000582792 PLBD2Q8NHP8 589 aa17.71■□□□□ 0.43
SS18-222ENST00000582792 DPF2Q92785 391 aa17.71■□□□□ 0.43
SS18-222ENST00000582792 SF3B3Q15393 1217 aaKnown RBP17.7■□□□□ 0.42
SS18-222ENST00000582792 WASHC4Q2M389 1173 aa17.7■□□□□ 0.42
SS18-222ENST00000582792 ZNF428Q96B54 188 aa17.7■□□□□ 0.42
SS18-222ENST00000582792 ISCA1Q9BUE6 129 aa17.7■□□□□ 0.42
SS18-222ENST00000582792 ZBTB12Q9Y330 459 aaPredicted RBP17.7■□□□□ 0.42
SS18-222ENST00000582792 PSMD14O00487 310 aa17.69■□□□□ 0.42
SS18-222ENST00000582792 RGS19P49795 217 aa17.69■□□□□ 0.42
SS18-222ENST00000582792 NEUROD2Q15784 382 aa17.69■□□□□ 0.42
SS18-222ENST00000582792 HDGFL1Q5TGJ6 251 aa17.69■□□□□ 0.42
SS18-222ENST00000582792 ANKRD13DQ6ZTN6 518 aa17.69■□□□□ 0.42
SS18-222ENST00000582792 CELF1Q92879 486 aaKnown RBP17.69■□□□□ 0.42
SS18-222ENST00000582792 FAM89AQ96GI7 184 aa17.69■□□□□ 0.42
SS18-222ENST00000582792 NSFL1CQ9UNZ2 370 aaKnown RBP17.69■□□□□ 0.42
SS18-222ENST00000582792 HOXB7P09629 217 aa17.68■□□□□ 0.42
SS18-222ENST00000582792 NOGQ13253 232 aa17.68■□□□□ 0.42
SS18-222ENST00000582792 USP48Q86UV5 1035 aa17.68■□□□□ 0.42
SS18-222ENST00000582792 CCDC146Q8IYE0 955 aa17.68■□□□□ 0.42
SS18-222ENST00000582792 DBNDD1Q9H9R9 158 aa17.68■□□□□ 0.42
SS18-222ENST00000582792 DBF4Q9UBU7 674 aaPredicted RBP17.68■□□□□ 0.42
SS18-222ENST00000582792 TRIM35Q9UPQ4 493 aa17.68■□□□□ 0.42
SS18-222ENST00000582792 LAS1LQ9Y4W2 734 aaKnown RBP17.68■□□□□ 0.42
SS18-222ENST00000582792 COL4A1P02462 1669 aa17.67■□□□□ 0.42
SS18-222ENST00000582792 C6orf229H3BNL8 230 aa17.67■□□□□ 0.42
SS18-222ENST00000582792 RPS12P25398 132 aaKnown RBP17.67■□□□□ 0.42
SS18-222ENST00000582792 HUNKP57058 714 aa17.67■□□□□ 0.42
SS18-222ENST00000582792 MLLT1Q03111 559 aaPredicted RBP17.67■□□□□ 0.42
SS18-222ENST00000582792 SAMD7Q7Z3H4 446 aa17.67■□□□□ 0.42
SS18-222ENST00000582792 MCOLN1Q9GZU1 580 aa17.67■□□□□ 0.42
SS18-222ENST00000582792 POLLQ9UGP5 575 aa17.67■□□□□ 0.42
SS18-222ENST00000582792 CASP8AP2Q9UKL3 1982 aa17.66■□□□□ 0.42
SS18-222ENST00000582792 ATP5J2-PTCD1G3V325 749 aa17.66■□□□□ 0.42
SS18-222ENST00000582792 RIMBP2O15034 1052 aa17.66■□□□□ 0.42
SS18-222ENST00000582792 GPSM2P81274 684 aa17.66■□□□□ 0.42
SS18-222ENST00000582792 TBC1D10BQ4KMP7 808 aaPredicted RBP17.66■□□□□ 0.42
SS18-222ENST00000582792 DLK2Q6UY11 383 aa17.66■□□□□ 0.42
SS18-222ENST00000582792 ZIC5Q96T25 663 aa17.66■□□□□ 0.42
SS18-222ENST00000582792 ECE2O60344 883 aa17.65■□□□□ 0.42
SS18-222ENST00000582792 EGFRP00533 1210 aa17.65■□□□□ 0.42
SS18-222ENST00000582792 TRIM28Q13263 835 aaKnown RBP17.65■□□□□ 0.42
SS18-222ENST00000582792 KRT26Q7Z3Y9 468 aa17.65■□□□□ 0.42
SS18-222ENST00000582792 RUNDC1Q96C34 613 aa17.65■□□□□ 0.42
SS18-222ENST00000582792 EYA3Q99504 573 aa17.65■□□□□ 0.42
SS18-222ENST00000582792 HYPKQ9NX55 129 aa17.65■□□□□ 0.42
SS18-222ENST00000582792 TNRC18O15417 2968 aaPredicted RBP17.65■□□□□ 0.42
SS18-222ENST00000582792 RTL9Q8NET4 1388 aa17.65■□□□□ 0.42
SS18-222ENST00000582792 ZNF316A6NFI3 1004 aaPredicted RBP17.64■□□□□ 0.41
SS18-222ENST00000582792 IRS4O14654 1257 aaPredicted RBP17.64■□□□□ 0.41
SS18-222ENST00000582792 RTL5Q5HYW3 569 aaPredicted RBP17.64■□□□□ 0.41
SS18-222ENST00000582792 TBC1D16Q8TBP0 767 aa17.64■□□□□ 0.41
SS18-222ENST00000582792 KCNQ5Q9NR82 932 aa17.64■□□□□ 0.41
SS18-222ENST00000582792 MYBBP1AQ9BQG0 1328 aaKnown RBP17.64■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 49.1 ms