RNA–Protein interactions for RNA: ENST00000580642.2

SS18-215, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-215ENST00000580642 ANKRD18BA2A2Z9 1011 aa18.89■□□□□ 0.61
SS18-215ENST00000580642 CNBD1Q8NA66 436 aa18.89■□□□□ 0.61
SS18-215ENST00000580642 NLRP3Q96P20 1036 aa18.89■□□□□ 0.61
SS18-215ENST00000580642 MSH5O43196 834 aa18.88■□□□□ 0.61
SS18-215ENST00000580642 SERPINB2P05120 415 aa18.88■□□□□ 0.61
SS18-215ENST00000580642 ST5P78524 1137 aa18.88■□□□□ 0.61
SS18-215ENST00000580642 ERFEQ4G0M1 354 aa18.88■□□□□ 0.61
SS18-215ENST00000580642 LAMB2P55268 1798 aa18.88■□□□□ 0.61
SS18-215ENST00000580642 POLRMTO00411 1230 aaKnown RBP18.87■□□□□ 0.61
SS18-215ENST00000580642 IL15P40933 162 aaPredicted RBP18.87■□□□□ 0.61
SS18-215ENST00000580642 NUTM1Q86Y26 1132 aa18.87■□□□□ 0.61
SS18-215ENST00000580642 SYNE4Q8N205 404 aa18.87■□□□□ 0.61
SS18-215ENST00000580642 EXOC6BQ9Y2D4 811 aa18.87■□□□□ 0.61
SS18-215ENST00000580642 CHMP3Q9Y3E7 222 aa18.87■□□□□ 0.61
SS18-215ENST00000580642 FAM177BA6PVY3 158 aa18.86■□□□□ 0.61
SS18-215ENST00000580642 NPHP1O15259 732 aa18.86■□□□□ 0.61
SS18-215ENST00000580642 HCLS1P14317 486 aaPredicted RBP18.86■□□□□ 0.61
SS18-215ENST00000580642 ITGA6P23229 1130 aa18.86■□□□□ 0.61
SS18-215ENST00000580642 OS9Q13438 667 aaPredicted RBP18.86■□□□□ 0.61
SS18-215ENST00000580642 RHPN1Q8TCX5 695 aa18.86■□□□□ 0.61
SS18-215ENST00000580642 TUBGCP6Q96RT7 1819 aa18.86■□□□□ 0.61
SS18-215ENST00000580642 EYA2O00167 538 aa18.85■□□□□ 0.61
SS18-215ENST00000580642 FAM161AQ3B820 660 aa18.85■□□□□ 0.61
SS18-215ENST00000580642 TAF7LQ5H9L4 462 aa18.85■□□□□ 0.61
SS18-215ENST00000580642 PRR5LQ6MZQ0 368 aa18.85■□□□□ 0.61
SS18-215ENST00000580642 CDC5LQ99459 802 aaKnown RBP18.85■□□□□ 0.61
SS18-215ENST00000580642 LNPKQ9C0E8 428 aa18.85■□□□□ 0.61
SS18-215ENST00000580642 GREM2Q9H772 168 aa18.85■□□□□ 0.61
SS18-215ENST00000580642 GPR108Q9NPR9 543 aa18.85■□□□□ 0.61
SS18-215ENST00000580642 PARP3Q9Y6F1 533 aa18.85■□□□□ 0.61
SS18-215ENST00000580642 DDR1Q08345 913 aa18.84■□□□□ 0.61
SS18-215ENST00000580642 CLASRPQ8N2M8 674 aaKnown RBP18.84■□□□□ 0.61
SS18-215ENST00000580642 ABCC12Q96J65 1359 aa18.83■□□□□ 0.61
SS18-215ENST00000580642 KLRG2A4D1S0 409 aaPredicted RBP18.83■□□□□ 0.6
SS18-215ENST00000580642 BRIP1Q9BX63 1249 aa18.83■□□□□ 0.6
SS18-215ENST00000580642 PA2G4Q9UQ80 394 aaKnown RBP18.83■□□□□ 0.6
SS18-215ENST00000580642 DDX60Q8IY21 1712 aaKnown RBP18.83■□□□□ 0.6
SS18-215ENST00000580642 MYH3P11055 1940 aa18.82■□□□□ 0.6
SS18-215ENST00000580642 CRY2Q49AN0 593 aa18.82■□□□□ 0.6
SS18-215ENST00000580642 OSBPL3Q9H4L5 887 aa18.82■□□□□ 0.6
SS18-215ENST00000580642 SASH1O94885 1247 aa18.81■□□□□ 0.6
SS18-215ENST00000580642 MMP10P09238 476 aa18.81■□□□□ 0.6
SS18-215ENST00000580642 IGHMBP2P38935 993 aaKnown RBP18.81■□□□□ 0.6
SS18-215ENST00000580642 ATG9AQ7Z3C6 839 aa18.81■□□□□ 0.6
SS18-215ENST00000580642 NRXN2Q9P2S2 1712 aa18.8■□□□□ 0.6
SS18-215ENST00000580642 AOX1Q06278 1338 aa18.8■□□□□ 0.6
SS18-215ENST00000580642 PDE4AP27815 886 aa18.8■□□□□ 0.6
SS18-215ENST00000580642 LDHAL6AQ6ZMR3 332 aa18.8■□□□□ 0.6
SS18-215ENST00000580642 STAP2Q9UGK3 403 aa18.8■□□□□ 0.6
SS18-215ENST00000580642 AKAP2Q9Y2D5 859 aa18.8■□□□□ 0.6
SS18-215ENST00000580642 RIPOR2Q9Y4F9 1068 aa18.8■□□□□ 0.6
SS18-215ENST00000580642 MROH5Q6ZUA9 1318 aa18.79■□□□□ 0.6
SS18-215ENST00000580642 HOXA10P31260 410 aaPredicted RBP18.79■□□□□ 0.6
SS18-215ENST00000580642 PDE6BP35913 854 aa18.79■□□□□ 0.6
SS18-215ENST00000580642 DDX46Q7L014 1031 aaKnown RBP18.79■□□□□ 0.6
SS18-215ENST00000580642 KLHDC4Q8TBB5 520 aa18.79■□□□□ 0.6
SS18-215ENST00000580642 MPHOSPH8Q99549 860 aa18.79■□□□□ 0.6
SS18-215ENST00000580642 SIL1Q9H173 461 aa18.79■□□□□ 0.6
SS18-215ENST00000580642 CEP126Q9P2H0 1117 aa18.79■□□□□ 0.6
SS18-215ENST00000580642 LRP5O75197 1615 aa18.78■□□□□ 0.6
SS18-215ENST00000580642 APBB1O00213 710 aa18.78■□□□□ 0.6
SS18-215ENST00000580642 TMC4Q7Z404 712 aa18.78■□□□□ 0.6
SS18-215ENST00000580642 ANKRD18AQ8IVF6 992 aa18.78■□□□□ 0.6
SS18-215ENST00000580642 GPATCH3Q96I76 525 aa18.78■□□□□ 0.6
SS18-215ENST00000580642 CNNM1Q9NRU3 951 aa18.78■□□□□ 0.6
SS18-215ENST00000580642 BSDC1Q9NW68 430 aaPredicted RBP18.78■□□□□ 0.6
SS18-215ENST00000580642 TTC41PQ6P2S7 1318 aa18.77■□□□□ 0.6
SS18-215ENST00000580642 SALL3Q9BXA9 1300 aa18.77■□□□□ 0.6
SS18-215ENST00000580642 SMARCA5O60264 1052 aaPredicted RBP18.77■□□□□ 0.6
SS18-215ENST00000580642 RGS3P49796 1198 aa18.77■□□□□ 0.6
SS18-215ENST00000580642 PLEKHM2Q8IWE5 1019 aa18.77■□□□□ 0.6
SS18-215ENST00000580642 IFIT2P09913 472 aaKnown RBP18.76■□□□□ 0.59
SS18-215ENST00000580642 MX1P20591 662 aa18.76■□□□□ 0.59
SS18-215ENST00000580642 RPS8P62241 208 aaKnown RBP18.76■□□□□ 0.59
SS18-215ENST00000580642 RBM17Q96I25 401 aaKnown RBP18.76■□□□□ 0.59
SS18-215ENST00000580642 ZNF594Q96JF6 807 aaPredicted RBP18.76■□□□□ 0.59
SS18-215ENST00000580642 CCDC85AQ96PX6 553 aaPredicted RBP18.76■□□□□ 0.59
SS18-215ENST00000580642 CRAMP1Q96RY5 1269 aa18.76■□□□□ 0.59
SS18-215ENST00000580642 MTFR1LQ9H019 292 aa18.76■□□□□ 0.59
SS18-215ENST00000580642 IL1RAPL2Q9NP60 686 aa18.76■□□□□ 0.59
SS18-215ENST00000580642 PDE1AP54750 535 aa18.75■□□□□ 0.59
SS18-215ENST00000580642 TFCP2Q12800 502 aa18.75■□□□□ 0.59
SS18-215ENST00000580642 GRAPQ13588 217 aa18.75■□□□□ 0.59
SS18-215ENST00000580642 LRRC24Q50LG9 513 aa18.75■□□□□ 0.59
SS18-215ENST00000580642 TNNI3KQ59H18 835 aa18.75■□□□□ 0.59
SS18-215ENST00000580642 BMP2KLQ5H9B9 411 aa18.75■□□□□ 0.59
SS18-215ENST00000580642 C3orf67Q6ZVT6 689 aa18.75■□□□□ 0.59
SS18-215ENST00000580642 GRAPLQ8TC17 118 aaPredicted RBP18.75■□□□□ 0.59
SS18-215ENST00000580642 RPGRQ92834 1020 aaKnown RBP18.75■□□□□ 0.59
SS18-215ENST00000580642 SEC31BQ9NQW1 1179 aa18.75■□□□□ 0.59
SS18-215ENST00000580642 FPGT-TNNI3KV9GXZ4 949 aa18.75■□□□□ 0.59
SS18-215ENST00000580642 ERC2O15083 957 aa18.74■□□□□ 0.59
SS18-215ENST00000580642 BBOX1O75936 387 aa18.74■□□□□ 0.59
SS18-215ENST00000580642 PDE8BO95263 885 aa18.74■□□□□ 0.59
SS18-215ENST00000580642 METTL24Q5JXM2 366 aa18.74■□□□□ 0.59
SS18-215ENST00000580642 PUS3Q9BZE2 481 aaKnown RBP18.74■□□□□ 0.59
SS18-215ENST00000580642 NPR1P16066 1061 aa18.73■□□□□ 0.59
SS18-215ENST00000580642 MSL1Q68DK7 614 aa18.73■□□□□ 0.59
SS18-215ENST00000580642 AACSQ86V21 672 aa18.73■□□□□ 0.59
SS18-215ENST00000580642 C16orf71Q8IYS4 520 aaPredicted RBP18.73■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms