RNA–Protein interactions for RNA: ENST00000580542.5

ITGB4-207, Transcript of integrin subunit beta 4, humanhuman

TSL 1 (best)

Gene ITGB4, Length 2,798 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ITGB4-207ENST00000580542 CWC15Q9P013 229 aaKnown RBP16.19■□□□□ 0.18
ITGB4-207ENST00000580542 SLFNL1Q499Z3 407 aa16.18■□□□□ 0.18
ITGB4-207ENST00000580542 ERO1AQ96HE7 468 aa16.18■□□□□ 0.18
ITGB4-207ENST00000580542 PRDM11Q9NQV5 511 aa16.18■□□□□ 0.18
ITGB4-207ENST00000580542 SOS1Q07889 1333 aaPredicted RBP16.18■□□□□ 0.18
ITGB4-207ENST00000580542 MRC1P22897 1456 aa16.18■□□□□ 0.18
ITGB4-207ENST00000580542 CASC1Q6TDU7 716 aa16.18■□□□□ 0.18
ITGB4-207ENST00000580542 CACNA1FO60840 1977 aa16.17■□□□□ 0.18
ITGB4-207ENST00000580542 ZSCAN26Q16670 478 aa16.17■□□□□ 0.18
ITGB4-207ENST00000580542 NOL8Q76FK4 1167 aaKnown RBP16.17■□□□□ 0.18
ITGB4-207ENST00000580542 JRKLQ9Y4A0 524 aa16.17■□□□□ 0.18
ITGB4-207ENST00000580542 CEP83Q9Y592 693 aa16.17■□□□□ 0.18
ITGB4-207ENST00000580542 NEK4P51957 841 aa16.17■□□□□ 0.18
ITGB4-207ENST00000580542 TPM4P67936 248 aa16.17■□□□□ 0.18
ITGB4-207ENST00000580542 NRAPQ86VF7 1730 aa16.17■□□□□ 0.18
ITGB4-207ENST00000580542 WNK3Q9BYP7 1800 aa16.17■□□□□ 0.18
ITGB4-207ENST00000580542 TOM1O60784 492 aa16.16■□□□□ 0.18
ITGB4-207ENST00000580542 GPS2Q13227 327 aa16.16■□□□□ 0.18
ITGB4-207ENST00000580542 SLC4A2P04920 1241 aa16.16■□□□□ 0.18
ITGB4-207ENST00000580542 CCDC172P0C7W6 258 aa16.16■□□□□ 0.18
ITGB4-207ENST00000580542 ZNF530Q6P9A1 599 aaPredicted RBP16.15■□□□□ 0.18
ITGB4-207ENST00000580542 ERC2O15083 957 aa16.15■□□□□ 0.18
ITGB4-207ENST00000580542 TAF7Q15545 349 aaPredicted RBP16.15■□□□□ 0.18
ITGB4-207ENST00000580542 G2E3Q7L622 706 aa16.15■□□□□ 0.18
ITGB4-207ENST00000580542 NLRP2Q9NX02 1062 aa16.15■□□□□ 0.18
ITGB4-207ENST00000580542 NRBP1Q9UHY1 535 aa16.15■□□□□ 0.18
ITGB4-207ENST00000580542 FHOD1Q9Y613 1164 aa16.15■□□□□ 0.18
ITGB4-207ENST00000580542 ZSCAN25Q6NSZ9 544 aa16.15■□□□□ 0.18
ITGB4-207ENST00000580542 CARD10Q9BWT7 1032 aa16.15■□□□□ 0.18
ITGB4-207ENST00000580542 MIS18AQ9NYP9 233 aa16.15■□□□□ 0.18
ITGB4-207ENST00000580542 A0A1B0GUL7 405 aa16.14■□□□□ 0.17
ITGB4-207ENST00000580542 RNF20Q5VTR2 975 aa16.14■□□□□ 0.17
ITGB4-207ENST00000580542 OSBPL3Q9H4L5 887 aa16.14■□□□□ 0.17
ITGB4-207ENST00000580542 SLU7O95391 586 aaKnown RBP16.14■□□□□ 0.17
ITGB4-207ENST00000580542 PDE1AP54750 535 aa16.14■□□□□ 0.17
ITGB4-207ENST00000580542 PTPN14Q15678 1187 aa16.14■□□□□ 0.17
ITGB4-207ENST00000580542 NOM1Q5C9Z4 860 aaKnown RBP16.14■□□□□ 0.17
ITGB4-207ENST00000580542 RAPGEF4Q8WZA2 1011 aa16.14■□□□□ 0.17
ITGB4-207ENST00000580542 KDM6AO15550 1401 aaPredicted RBP16.14■□□□□ 0.17
ITGB4-207ENST00000580542 NWD2Q9ULI1 1742 aa16.13■□□□□ 0.17
ITGB4-207ENST00000580542 F6X3S4 739 aa16.13■□□□□ 0.17
ITGB4-207ENST00000580542 RNMTO43148 476 aaKnown RBP16.13■□□□□ 0.17
ITGB4-207ENST00000580542 PNMA6AP0CW24 399 aaPredicted RBP16.13■□□□□ 0.17
ITGB4-207ENST00000580542 TATP17735 454 aaPredicted RBP16.13■□□□□ 0.17
ITGB4-207ENST00000580542 PLA2G4AP47712 749 aa16.13■□□□□ 0.17
ITGB4-207ENST00000580542 ST5P78524 1137 aa16.13■□□□□ 0.17
ITGB4-207ENST00000580542 SART3Q15020 963 aaKnown RBP16.13■□□□□ 0.17
ITGB4-207ENST00000580542 SMARCE1Q969G3 411 aa16.13■□□□□ 0.17
ITGB4-207ENST00000580542 DEF6Q9H4E7 631 aa16.13■□□□□ 0.17
ITGB4-207ENST00000580542 TSPYL4Q9UJ04 414 aa16.13■□□□□ 0.17
ITGB4-207ENST00000580542 RRP15Q9Y3B9 282 aaKnown RBP16.13■□□□□ 0.17
ITGB4-207ENST00000580542 HMMRO75330 724 aa16.13■□□□□ 0.17
ITGB4-207ENST00000580542 TTC31Q49AM3 519 aaPredicted RBP16.13■□□□□ 0.17
ITGB4-207ENST00000580542 SRLQ86TD4 932 aa16.13■□□□□ 0.17
ITGB4-207ENST00000580542 LGR6Q9HBX8 967 aa16.13■□□□□ 0.17
ITGB4-207ENST00000580542 CNPY2Q9Y2B0 182 aa16.13■□□□□ 0.17
ITGB4-207ENST00000580542 FUCA2Q9BTY2 467 aa16.12■□□□□ 0.17
ITGB4-207ENST00000580542 WDR33Q9C0J8 1336 aaKnown RBP16.12■□□□□ 0.17
ITGB4-207ENST00000580542 UBE2HP62256 183 aa16.12■□□□□ 0.17
ITGB4-207ENST00000580542 SLC4A10Q6U841 1118 aa16.12■□□□□ 0.17
ITGB4-207ENST00000580542 HEG1Q9ULI3 1381 aa16.12■□□□□ 0.17
ITGB4-207ENST00000580542 N4BP2Q86UW6 1770 aaPredicted RBP16.12■□□□□ 0.17
ITGB4-207ENST00000580542 CCDC192P0DO97 292 aa16.11■□□□□ 0.17
ITGB4-207ENST00000580542 CSB-PGBD3P0DP91 1061 aa16.11■□□□□ 0.17
ITGB4-207ENST00000580542 C1orf141Q5JVX7 400 aa16.11■□□□□ 0.17
ITGB4-207ENST00000580542 SPG7Q9UQ90 795 aa16.11■□□□□ 0.17
ITGB4-207ENST00000580542 SALL3Q9BXA9 1300 aa16.11■□□□□ 0.17
ITGB4-207ENST00000580542 PHKG2P15735 406 aa16.11■□□□□ 0.17
ITGB4-207ENST00000580542 CLCN6P51797 869 aa16.11■□□□□ 0.17
ITGB4-207ENST00000580542 TRIM5Q9C035 493 aa16.11■□□□□ 0.17
ITGB4-207ENST00000580542 DISP2A7MBM2 1401 aa16.11■□□□□ 0.17
ITGB4-207ENST00000580542 ERCC6LQ2NKX8 1250 aa16.1■□□□□ 0.17
ITGB4-207ENST00000580542 TSHZ3Q63HK5 1081 aa16.1■□□□□ 0.17
ITGB4-207ENST00000580542 ATG3Q9NT62 314 aa16.1■□□□□ 0.17
ITGB4-207ENST00000580542 TUBGCP6Q96RT7 1819 aa16.1■□□□□ 0.17
ITGB4-207ENST00000580542 MCM2P49736 904 aa16.1■□□□□ 0.17
ITGB4-207ENST00000580542 CCT4P50991 539 aaKnown RBP16.1■□□□□ 0.17
ITGB4-207ENST00000580542 H2AFXP16104 143 aaPredicted RBP16.09■□□□□ 0.17
ITGB4-207ENST00000580542 EXOC6BQ9Y2D4 811 aa16.09■□□□□ 0.17
ITGB4-207ENST00000580542 CCDC171Q6TFL3 1326 aa16.09■□□□□ 0.17
ITGB4-207ENST00000580542 PAPPAQ13219 1627 aa16.09■□□□□ 0.17
ITGB4-207ENST00000580542 FIBPO43427 364 aa16.09■□□□□ 0.17
ITGB4-207ENST00000580542 HOXB7P09629 217 aa16.09■□□□□ 0.17
ITGB4-207ENST00000580542 LUZP1Q86V48 1076 aa16.09■□□□□ 0.17
ITGB4-207ENST00000580542 FAM200AQ8TCP9 573 aa16.09■□□□□ 0.17
ITGB4-207ENST00000580542 CACTINQ8WUQ7 758 aaKnown RBP16.09■□□□□ 0.17
ITGB4-207ENST00000580542 ATP2B1P20020 1258 aa16.08■□□□□ 0.16
ITGB4-207ENST00000580542 TMCO3Q6UWJ1 677 aa16.08■□□□□ 0.16
ITGB4-207ENST00000580542 MPRIPQ6WCQ1 1025 aa16.08■□□□□ 0.16
ITGB4-207ENST00000580542 IFNL2Q8IZJ0 200 aa16.08■□□□□ 0.16
ITGB4-207ENST00000580542 TMEM87AQ8NBN3 555 aa16.08■□□□□ 0.16
ITGB4-207ENST00000580542 ESYT1Q9BSJ8 1104 aa16.08■□□□□ 0.16
ITGB4-207ENST00000580542 SRCIN1Q9C0H9 1055 aa16.08■□□□□ 0.16
ITGB4-207ENST00000580542 USP27XA6NNY8 438 aa16.08■□□□□ 0.16
ITGB4-207ENST00000580542 CYP27B1O15528 508 aa16.08■□□□□ 0.16
ITGB4-207ENST00000580542 GNAI2P04899 355 aa16.08■□□□□ 0.16
ITGB4-207ENST00000580542 CUL4AQ13619 759 aa16.08■□□□□ 0.16
ITGB4-207ENST00000580542 E2F4Q16254 413 aa16.08■□□□□ 0.16
ITGB4-207ENST00000580542 LARP1Q6PKG0 1096 aaKnown RBP16.08■□□□□ 0.16
ITGB4-207ENST00000580542 PACS2Q86VP3 889 aa16.08■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms