RNA–Protein interactions for RNA: ENST00000580002.5

SHMT1-207, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,759 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-207ENST00000580002 CHD1LQ86WJ1 897 aa31.18■■■□□ 2.58
SHMT1-207ENST00000580002 C16orf71Q8IYS4 520 aaPredicted RBP31.18■■■□□ 2.58
SHMT1-207ENST00000580002 GREM2Q9H772 168 aa31.18■■■□□ 2.58
SHMT1-207ENST00000580002 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP31.17■■■□□ 2.58
SHMT1-207ENST00000580002 NOP58Q9Y2X3 529 aaKnown RBP31.17■■■□□ 2.58
SHMT1-207ENST00000580002 GTF2E1P29083 439 aaPredicted RBP31.16■■■□□ 2.58
SHMT1-207ENST00000580002 COL24A1Q17RW2 1714 aa31.15■■■□□ 2.58
SHMT1-207ENST00000580002 TPTE2Q6XPS3 522 aa31.15■■■□□ 2.58
SHMT1-207ENST00000580002 CARMIL3Q8ND23 1372 aa31.15■■■□□ 2.58
SHMT1-207ENST00000580002 POLRMTO00411 1230 aaKnown RBP31.14■■■□□ 2.58
SHMT1-207ENST00000580002 SERPINB2P05120 415 aa31.14■■■□□ 2.58
SHMT1-207ENST00000580002 DDX60Q8IY21 1712 aaKnown RBP31.14■■■□□ 2.58
SHMT1-207ENST00000580002 OTUD7AQ8TE49 926 aaPredicted RBP31.13■■■□□ 2.57
SHMT1-207ENST00000580002 NYXQ9GZU5 481 aa31.13■■■□□ 2.57
SHMT1-207ENST00000580002 IL1RAPL2Q9NP60 686 aa31.13■■■□□ 2.57
SHMT1-207ENST00000580002 SLC10A5Q5PT55 438 aa31.12■■■□□ 2.57
SHMT1-207ENST00000580002 PRR5LQ6MZQ0 368 aa31.12■■■□□ 2.57
SHMT1-207ENST00000580002 PUS3Q9BZE2 481 aaKnown RBP31.12■■■□□ 2.57
SHMT1-207ENST00000580002 COPRSQ9NQ92 184 aa31.12■■■□□ 2.57
SHMT1-207ENST00000580002 SEC31BQ9NQW1 1179 aa31.12■■■□□ 2.57
SHMT1-207ENST00000580002 ITGA6P23229 1130 aa31.12■■■□□ 2.57
SHMT1-207ENST00000580002 NLGN1Q8N2Q7 840 aa31.12■■■□□ 2.57
SHMT1-207ENST00000580002 SASH1O94885 1247 aa31.11■■■□□ 2.57
SHMT1-207ENST00000580002 OS9Q13438 667 aaPredicted RBP31.1■■■□□ 2.57
SHMT1-207ENST00000580002 CCDC57Q2TAC2 916 aa31.1■■■□□ 2.57
SHMT1-207ENST00000580002 LRRC24Q50LG9 513 aa31.1■■■□□ 2.57
SHMT1-207ENST00000580002 RHPN1Q8TCX5 695 aa31.1■■■□□ 2.57
SHMT1-207ENST00000580002 LRRCC1Q9C099 1032 aa31.1■■■□□ 2.57
SHMT1-207ENST00000580002 MMP10P09238 476 aa31.09■■■□□ 2.57
SHMT1-207ENST00000580002 G3BP1Q13283 466 aaKnown RBP eCLIP31.09■■■□□ 2.57
SHMT1-207ENST00000580002 CNBD1Q8NA66 436 aa31.09■■■□□ 2.57
SHMT1-207ENST00000580002 NPHP1O15259 732 aa31.08■■■□□ 2.57
SHMT1-207ENST00000580002 IFIT5Q13325 482 aaKnown RBP31.08■■■□□ 2.57
SHMT1-207ENST00000580002 ATG9AQ7Z3C6 839 aa31.07■■■□□ 2.56
SHMT1-207ENST00000580002 COL4A1P02462 1669 aa31.07■■■□□ 2.56
SHMT1-207ENST00000580002 RAB11FIP3O75154 756 aa31.07■■■□□ 2.56
SHMT1-207ENST00000580002 MYH3P11055 1940 aa31.06■■■□□ 2.56
SHMT1-207ENST00000580002 ANKRD18BA2A2Z9 1011 aa31.05■■■□□ 2.56
SHMT1-207ENST00000580002 SF3B3Q15393 1217 aaKnown RBP31.05■■■□□ 2.56
SHMT1-207ENST00000580002 KIF1BPQ96EK5 621 aa31.05■■■□□ 2.56
SHMT1-207ENST00000580002 CCDC152Q4G0S7 254 aa31.03■■■□□ 2.56
SHMT1-207ENST00000580002 HSP90AB4PQ58FF6 505 aa31.03■■■□□ 2.56
SHMT1-207ENST00000580002 NLRP3Q96P20 1036 aa31.03■■■□□ 2.56
SHMT1-207ENST00000580002 LAMB2P55268 1798 aa31.03■■■□□ 2.56
SHMT1-207ENST00000580002 TNRC6CQ9HCJ0 1690 aaKnown RBP31.02■■■□□ 2.56
SHMT1-207ENST00000580002 EYA2O00167 538 aa31.02■■■□□ 2.56
SHMT1-207ENST00000580002 TFCP2Q12800 502 aa31.02■■■□□ 2.56
SHMT1-207ENST00000580002 QSER1Q2KHR3 1735 aa31.02■■■□□ 2.56
SHMT1-207ENST00000580002 TAF7LQ5H9L4 462 aa31.02■■■□□ 2.56
SHMT1-207ENST00000580002 PLEKHM2Q8IWE5 1019 aa31.01■■■□□ 2.55
SHMT1-207ENST00000580002 ZBTB47Q9UFB7 747 aaPredicted RBP31.01■■■□□ 2.55
SHMT1-207ENST00000580002 HSP90B1P14625 803 aaKnown RBP31■■■□□ 2.55
SHMT1-207ENST00000580002 R3HDM1Q15032 1099 aaKnown RBP31■■■□□ 2.55
SHMT1-207ENST00000580002 TSHZ3Q63HK5 1081 aa31■■■□□ 2.55
SHMT1-207ENST00000580002 PARP3Q9Y6F1 533 aa31■■■□□ 2.55
SHMT1-207ENST00000580002 LDHAL6AQ6ZMR3 332 aa30.99■■■□□ 2.55
SHMT1-207ENST00000580002 TAF1P21675 1872 aa30.99■■■□□ 2.55
SHMT1-207ENST00000580002 EAF2Q96CJ1 260 aaPredicted RBP30.98■■■□□ 2.55
SHMT1-207ENST00000580002 ST5P78524 1137 aa30.97■■■□□ 2.55
SHMT1-207ENST00000580002 SLC51AQ86UW1 340 aa30.97■■■□□ 2.55
SHMT1-207ENST00000580002 ERC1Q8IUD2 1116 aa30.97■■■□□ 2.55
SHMT1-207ENST00000580002 CELF1Q92879 486 aaKnown RBP30.97■■■□□ 2.55
SHMT1-207ENST00000580002 RIPOR2Q9Y4F9 1068 aa30.97■■■□□ 2.55
SHMT1-207ENST00000580002 CASZ1Q86V15 1759 aa30.97■■■□□ 2.55
SHMT1-207ENST00000580002 CCDC8Q9H0W5 538 aaPredicted RBP30.96■■■□□ 2.55
SHMT1-207ENST00000580002 SALL3Q9BXA9 1300 aa30.96■■■□□ 2.55
SHMT1-207ENST00000580002 RTL9Q8NET4 1388 aa30.96■■■□□ 2.55
SHMT1-207ENST00000580002 PSDA5PKW4 1024 aaPredicted RBP30.95■■■□□ 2.55
SHMT1-207ENST00000580002 CIAO1O76071 339 aa30.95■■■□□ 2.55
SHMT1-207ENST00000580002 ZBTB7AO95365 584 aa30.95■■■□□ 2.55
SHMT1-207ENST00000580002 IL15P40933 162 aaPredicted RBP30.95■■■□□ 2.55
SHMT1-207ENST00000580002 TLR7Q9NYK1 1049 aaKnown RBP30.95■■■□□ 2.55
SHMT1-207ENST00000580002 CNNM1Q9NRU3 951 aa30.94■■■□□ 2.54
SHMT1-207ENST00000580002 AACSQ86V21 672 aa30.94■■■□□ 2.54
SHMT1-207ENST00000580002 HELBQ8NG08 1087 aaPredicted RBP30.94■■■□□ 2.54
SHMT1-207ENST00000580002 CLASRPQ8N2M8 674 aaKnown RBP30.92■■■□□ 2.54
SHMT1-207ENST00000580002 NRXN2Q9P2S2 1712 aa30.92■■■□□ 2.54
SHMT1-207ENST00000580002 PDE1AP54750 535 aa30.91■■■□□ 2.54
SHMT1-207ENST00000580002 TNNI3KQ59H18 835 aa30.91■■■□□ 2.54
SHMT1-207ENST00000580002 ATF5Q9Y2D1 282 aaPredicted RBP30.91■■■□□ 2.54
SHMT1-207ENST00000580002 FPGT-TNNI3KV9GXZ4 949 aa30.91■■■□□ 2.54
SHMT1-207ENST00000580002 RIC1Q4ADV7 1423 aa30.91■■■□□ 2.54
SHMT1-207ENST00000580002 SNAP23O00161 211 aa30.9■■■□□ 2.54
SHMT1-207ENST00000580002 TIMM10P62072 90 aa30.9■■■□□ 2.54
SHMT1-207ENST00000580002 CRY2Q49AN0 593 aa30.9■■■□□ 2.54
SHMT1-207ENST00000580002 MPHOSPH8Q99549 860 aa30.9■■■□□ 2.54
SHMT1-207ENST00000580002 IGHMBP2P38935 993 aaKnown RBP30.89■■■□□ 2.54
SHMT1-207ENST00000580002 ANKRD18AQ8IVF6 992 aa30.89■■■□□ 2.54
SHMT1-207ENST00000580002 CEP126Q9P2H0 1117 aa30.89■■■□□ 2.54
SHMT1-207ENST00000580002 METTL24Q5JXM2 366 aa30.89■■■□□ 2.54
SHMT1-207ENST00000580002 DDX46Q7L014 1031 aaKnown RBP30.89■■■□□ 2.54
SHMT1-207ENST00000580002 CDC5LQ99459 802 aaKnown RBP30.89■■■□□ 2.54
SHMT1-207ENST00000580002 BRIP1Q9BX63 1249 aa30.89■■■□□ 2.54
SHMT1-207ENST00000580002 FBXO3Q9UK99 471 aa30.89■■■□□ 2.54
SHMT1-207ENST00000580002 ANKRD31Q8N7Z5 1873 aa30.88■■■□□ 2.53
SHMT1-207ENST00000580002 KLRG2A4D1S0 409 aaPredicted RBP30.88■■■□□ 2.53
SHMT1-207ENST00000580002 MX1P20591 662 aa30.88■■■□□ 2.53
SHMT1-207ENST00000580002 VGLL2Q8N8G2 317 aa30.88■■■□□ 2.53
SHMT1-207ENST00000580002 SLC16A10Q8TF71 515 aa30.88■■■□□ 2.53
SHMT1-207ENST00000580002 WTIPA6NIX2 430 aaPredicted RBP30.87■■■□□ 2.53
Retrieved 100 of 20,778 RNA–protein pairs in 10.6 ms