RNA–Protein interactions for RNA: ENST00000575100.1

VPS53-217, Transcript of VPS53, GARP complex subunit, humanhuman

Gene VPS53, Length 1,972 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-217ENST00000575100 SH3BP5O60239 455 aa8.85□□□□□ -0.99
VPS53-217ENST00000575100 RNF135Q8IUD6 432 aa8.85□□□□□ -0.99
VPS53-217ENST00000575100 BTG4Q9NY30 223 aa8.85□□□□□ -0.99
VPS53-217ENST00000575100 MKRN1Q9UHC7 482 aaKnown RBP8.85□□□□□ -0.99
VPS53-217ENST00000575100 PRR12Q9ULL5 1215 aa8.85□□□□□ -0.99
VPS53-217ENST00000575100 G3BP2Q9UN86 482 aaKnown RBP8.85□□□□□ -0.99
VPS53-217ENST00000575100 CD163L1Q9NR16 1453 aa8.85□□□□□ -0.99
VPS53-217ENST00000575100 RHBDL3P58872 404 aa8.84□□□□□ -0.99
VPS53-217ENST00000575100 PADI6Q6TGC4 694 aa8.84□□□□□ -0.99
VPS53-217ENST00000575100 CLEC4GQ6UXB4 293 aa8.84□□□□□ -0.99
VPS53-217ENST00000575100 ANKMY2Q8IV38 441 aa8.84□□□□□ -0.99
VPS53-217ENST00000575100 CABP1Q9NZU7 370 aa8.84□□□□□ -0.99
VPS53-217ENST00000575100 ENPP3O14638 875 aa8.84□□□□□ -0.99
VPS53-217ENST00000575100 S100BP04271 92 aaPredicted RBP8.84□□□□□ -0.99
VPS53-217ENST00000575100 FAM98CQ17RN3 349 aaKnown RBP8.84□□□□□ -0.99
VPS53-217ENST00000575100 NUDT16Q96DE0 195 aaKnown RBP8.84□□□□□ -0.99
VPS53-217ENST00000575100 LMO7Q8WWI1 1683 aa8.84□□□□□ -1
VPS53-217ENST00000575100 NUP188Q5SRE5 1749 aa8.83□□□□□ -1
VPS53-217ENST00000575100 NRKQ7Z2Y5 1582 aa8.83□□□□□ -1
VPS53-217ENST00000575100 RASA1P20936 1047 aa8.83□□□□□ -1
VPS53-217ENST00000575100 ARID5AQ03989 594 aa8.83□□□□□ -1
VPS53-217ENST00000575100 LARP1Q6PKG0 1096 aaKnown RBP8.83□□□□□ -1
VPS53-217ENST00000575100 DEPDC4Q8N2C3 294 aa8.83□□□□□ -1
VPS53-217ENST00000575100 FAM161BQ96MY7 647 aa8.83□□□□□ -1
VPS53-217ENST00000575100 EPAS1Q99814 870 aa8.83□□□□□ -1
VPS53-217ENST00000575100 A0A1W2PP64 1363 aa8.83□□□□□ -1
VPS53-217ENST00000575100 PPIP5K1Q6PFW1 1433 aa8.83□□□□□ -1
VPS53-217ENST00000575100 XRCC5P13010 732 aaKnown RBP8.82□□□□□ -1
VPS53-217ENST00000575100 FOXD4Q12950 439 aaPredicted RBP8.82□□□□□ -1
VPS53-217ENST00000575100 TTC13Q8NBP0 860 aa8.82□□□□□ -1
VPS53-217ENST00000575100 PNMA2Q9UL42 364 aa8.82□□□□□ -1
VPS53-217ENST00000575100 EPB41L3Q9Y2J2 1087 aaPredicted RBP8.82□□□□□ -1
VPS53-217ENST00000575100 SPATA31A1Q5TZJ5 1347 aa8.82□□□□□ -1
VPS53-217ENST00000575100 PHF14O94880 888 aa8.82□□□□□ -1
VPS53-217ENST00000575100 SKIP12755 728 aa8.82□□□□□ -1
VPS53-217ENST00000575100 PRKRIP1Q9H875 184 aaPredicted RBP8.82□□□□□ -1
VPS53-217ENST00000575100 RPS6KL1Q9Y6S9 549 aa8.82□□□□□ -1
VPS53-217ENST00000575100 PARD3Q8TEW0 1356 aa8.82□□□□□ -1
VPS53-217ENST00000575100 PARP4Q9UKK3 1724 aaKnown RBP8.81□□□□□ -1
VPS53-217ENST00000575100 A0A0G2JS52 829 aa8.81□□□□□ -1
VPS53-217ENST00000575100 PSDA5PKW4 1024 aaPredicted RBP8.81□□□□□ -1
VPS53-217ENST00000575100 DNAJC6O75061 913 aa8.81□□□□□ -1
VPS53-217ENST00000575100 ZNF76P36508 570 aa8.81□□□□□ -1
VPS53-217ENST00000575100 BIRC2Q13490 618 aa8.81□□□□□ -1
VPS53-217ENST00000575100 OCLNQ16625 522 aa8.81□□□□□ -1
VPS53-217ENST00000575100 FMNL3Q8IVF7 1028 aa8.81□□□□□ -1
VPS53-217ENST00000575100 RPS6KC1Q96S38 1066 aa8.81□□□□□ -1
VPS53-217ENST00000575100 TMEM106CQ9BVX2 250 aa8.81□□□□□ -1
VPS53-217ENST00000575100 SPC25Q9HBM1 224 aa8.81□□□□□ -1
VPS53-217ENST00000575100 POLR3AO14802 1390 aaPredicted RBP8.81□□□□□ -1
VPS53-217ENST00000575100 ANKRD36BQ8N2N9 1353 aa8.81□□□□□ -1
VPS53-217ENST00000575100 RGPD3A6NKT7 1758 aaPredicted RBP8.81□□□□□ -1
VPS53-217ENST00000575100 RGPD4Q7Z3J3 1758 aa8.81□□□□□ -1
VPS53-217ENST00000575100 NSD3Q9BZ95 1437 aa8.81□□□□□ -1
VPS53-217ENST00000575100 KIAA0232Q92628 1395 aa8.81□□□□□ -1
VPS53-217ENST00000575100 GABBR2O75899 941 aa8.81□□□□□ -1
VPS53-217ENST00000575100 CC2D1BQ5T0F9 858 aaKnown RBP8.81□□□□□ -1
VPS53-217ENST00000575100 MAMSTRQ6ZN01 415 aa8.81□□□□□ -1
VPS53-217ENST00000575100 PNMA1Q8ND90 353 aa8.81□□□□□ -1
VPS53-217ENST00000575100 NGDNQ8NEJ9 315 aaKnown RBP8.81□□□□□ -1
VPS53-217ENST00000575100 HELBQ8NG08 1087 aaPredicted RBP8.81□□□□□ -1
VPS53-217ENST00000575100 PRDM11Q9NQV5 511 aa8.81□□□□□ -1
VPS53-217ENST00000575100 C19orf67A6NJJ6 358 aa8.8□□□□□ -1
VPS53-217ENST00000575100 ANP32CO43423 234 aa8.8□□□□□ -1
VPS53-217ENST00000575100 CCDC184Q52MB2 194 aa8.8□□□□□ -1
VPS53-217ENST00000575100 TMC4Q7Z404 712 aa8.8□□□□□ -1
VPS53-217ENST00000575100 FAM174AQ8TBP5 190 aa8.8□□□□□ -1
VPS53-217ENST00000575100 GNL3LQ9NVN8 582 aaKnown RBP8.8□□□□□ -1
VPS53-217ENST00000575100 CPSF1Q10570 1443 aaKnown RBP8.8□□□□□ -1
VPS53-217ENST00000575100 SSH2Q76I76 1423 aa8.8□□□□□ -1
VPS53-217ENST00000575100 ATP5J2-PTCD1G3V325 749 aa8.79□□□□□ -1
VPS53-217ENST00000575100 NFE2L2Q16236 605 aa8.79□□□□□ -1
VPS53-217ENST00000575100 PNISRQ8TF01 805 aaKnown RBP8.79□□□□□ -1
VPS53-217ENST00000575100 CAMKK2Q96RR4 588 aa8.79□□□□□ -1
VPS53-217ENST00000575100 CXXC1Q9P0U4 656 aaPredicted RBP8.79□□□□□ -1
VPS53-217ENST00000575100 PARP2Q9UGN5 583 aa8.79□□□□□ -1
VPS53-217ENST00000575100 WNK3Q9BYP7 1800 aa8.79□□□□□ -1
VPS53-217ENST00000575100 PEAK1Q9H792 1746 aa8.79□□□□□ -1
VPS53-217ENST00000575100 CPDO75976 1380 aa8.79□□□□□ -1
VPS53-217ENST00000575100 NINLQ9Y2I6 1382 aa8.79□□□□□ -1
VPS53-217ENST00000575100 CAMTA1Q9Y6Y1 1673 aa8.79□□□□□ -1
VPS53-217ENST00000575100 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP8.79□□□□□ -1
VPS53-217ENST00000575100 FMR1Q06787 632 aaKnown RBP eCLIP8.79□□□□□ -1
VPS53-217ENST00000575100 DPYDQ12882 1025 aa8.79□□□□□ -1
VPS53-217ENST00000575100 FAM196AQ6ZSG2 479 aa8.79□□□□□ -1
VPS53-217ENST00000575100 C11orf96Q7Z7L8 435 aa8.79□□□□□ -1
VPS53-217ENST00000575100 MCF2L2Q86YR7 1114 aa8.79□□□□□ -1
VPS53-217ENST00000575100 FAM9BQ8IZU0 186 aa8.79□□□□□ -1
VPS53-217ENST00000575100 KNSTRNQ9Y448 316 aa8.79□□□□□ -1
VPS53-217ENST00000575100 SBF2Q86WG5 1849 aa8.79□□□□□ -1
VPS53-217ENST00000575100 ACEP12821 1306 aa8.78□□□□□ -1
VPS53-217ENST00000575100 AMPD3Q01432 767 aa8.78□□□□□ -1
VPS53-217ENST00000575100 FAM182BQ5T319 152 aa8.78□□□□□ -1
VPS53-217ENST00000575100 DPY19L2Q6NUT2 758 aa8.78□□□□□ -1
VPS53-217ENST00000575100 SRCAPQ6ZRS2 3230 aa8.78□□□□□ -1
VPS53-217ENST00000575100 SULF1Q8IWU6 871 aa8.78□□□□□ -1
VPS53-217ENST00000575100 CNPY4Q8N129 248 aa8.78□□□□□ -1
VPS53-217ENST00000575100 TSC1Q92574 1164 aa8.78□□□□□ -1
VPS53-217ENST00000575100 MRS2Q9HD23 443 aa8.78□□□□□ -1
VPS53-217ENST00000575100 USP19O94966 1318 aa8.78□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms