RNA–Protein interactions for RNA: ENST00000574662.1

SMPD3-212, Transcript of sphingomyelin phosphodiesterase 3, humanhuman

TSL 3

Gene SMPD3, Length 1,755 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD3-212ENST00000574662 UPF2Q9HAU5 1272 aaKnown RBP19.73■□□□□ 0.75
SMPD3-212ENST00000574662 COL24A1Q17RW2 1714 aa19.73■□□□□ 0.75
SMPD3-212ENST00000574662 SLC10A5Q5PT55 438 aa19.72■□□□□ 0.75
SMPD3-212ENST00000574662 SRGAP3O43295 1099 aa19.72■□□□□ 0.75
SMPD3-212ENST00000574662 PDE8AO60658 829 aa19.72■□□□□ 0.75
SMPD3-212ENST00000574662 GTF2E1P29083 439 aaPredicted RBP19.72■□□□□ 0.75
SMPD3-212ENST00000574662 PRR5LQ6MZQ0 368 aa19.72■□□□□ 0.75
SMPD3-212ENST00000574662 SSH3Q8TE77 659 aa19.72■□□□□ 0.75
SMPD3-212ENST00000574662 ABCC12Q96J65 1359 aa19.72■□□□□ 0.75
SMPD3-212ENST00000574662 CSF1RP07333 972 aa19.71■□□□□ 0.75
SMPD3-212ENST00000574662 POLA2Q14181 598 aa19.71■□□□□ 0.75
SMPD3-212ENST00000574662 C3orf67Q6ZVT6 689 aa19.71■□□□□ 0.75
SMPD3-212ENST00000574662 GSE1Q14687 1217 aa19.7■□□□□ 0.74
SMPD3-212ENST00000574662 TTLL11Q8NHH1 800 aa19.7■□□□□ 0.74
SMPD3-212ENST00000574662 SLC16A10Q8TF71 515 aa19.7■□□□□ 0.74
SMPD3-212ENST00000574662 CCDC85AQ96PX6 553 aaPredicted RBP19.7■□□□□ 0.74
SMPD3-212ENST00000574662 CTSWP56202 376 aa19.7■□□□□ 0.74
SMPD3-212ENST00000574662 CNBD1Q8NA66 436 aa19.7■□□□□ 0.74
SMPD3-212ENST00000574662 PDZRN3Q9UPQ7 1066 aa19.7■□□□□ 0.74
SMPD3-212ENST00000574662 ZBTB7AO95365 584 aa19.68■□□□□ 0.74
SMPD3-212ENST00000574662 RFX5P48382 616 aaPredicted RBP19.68■□□□□ 0.74
SMPD3-212ENST00000574662 CHMP3Q9Y3E7 222 aa19.68■□□□□ 0.74
SMPD3-212ENST00000574662 PARP3Q9Y6F1 533 aa19.68■□□□□ 0.74
SMPD3-212ENST00000574662 NPHP1O15259 732 aa19.67■□□□□ 0.74
SMPD3-212ENST00000574662 KLHDC4Q8TBB5 520 aa19.67■□□□□ 0.74
SMPD3-212ENST00000574662 DCTPP1Q9H773 170 aa19.67■□□□□ 0.74
SMPD3-212ENST00000574662 DDX60Q8IY21 1712 aaKnown RBP19.67■□□□□ 0.74
SMPD3-212ENST00000574662 HMMRO75330 724 aa19.67■□□□□ 0.74
SMPD3-212ENST00000574662 GREM2Q9H772 168 aa19.67■□□□□ 0.74
SMPD3-212ENST00000574662 PA2G4Q9UQ80 394 aaKnown RBP19.67■□□□□ 0.74
SMPD3-212ENST00000574662 ATF5Q9Y2D1 282 aaPredicted RBP19.66■□□□□ 0.74
SMPD3-212ENST00000574662 CASZ1Q86V15 1759 aa19.65■□□□□ 0.74
SMPD3-212ENST00000574662 HSP90B1P14625 803 aaKnown RBP19.65■□□□□ 0.74
SMPD3-212ENST00000574662 PTPN12Q05209 780 aaKnown RBP19.65■□□□□ 0.74
SMPD3-212ENST00000574662 SF3B3Q15393 1217 aaKnown RBP19.65■□□□□ 0.74
SMPD3-212ENST00000574662 SMC5Q8IY18 1101 aa19.65■□□□□ 0.74
SMPD3-212ENST00000574662 ZNF594Q96JF6 807 aaPredicted RBP19.65■□□□□ 0.74
SMPD3-212ENST00000574662 NLRP3Q96P20 1036 aa19.65■□□□□ 0.74
SMPD3-212ENST00000574662 EXOC6BQ9Y2D4 811 aa19.65■□□□□ 0.74
SMPD3-212ENST00000574662 ST5P78524 1137 aa19.64■□□□□ 0.73
SMPD3-212ENST00000574662 SEC31BQ9NQW1 1179 aa19.64■□□□□ 0.73
SMPD3-212ENST00000574662 SURF6O75683 361 aaKnown RBP19.63■□□□□ 0.73
SMPD3-212ENST00000574662 ITGA6P23229 1130 aa19.63■□□□□ 0.73
SMPD3-212ENST00000574662 TBC1D32Q96NH3 1257 aa19.63■□□□□ 0.73
SMPD3-212ENST00000574662 MTFR1LQ9H019 292 aa19.63■□□□□ 0.73
SMPD3-212ENST00000574662 NRXN2Q9P2S2 1712 aa19.63■□□□□ 0.73
SMPD3-212ENST00000574662 IFIT5Q13325 482 aaKnown RBP19.62■□□□□ 0.73
SMPD3-212ENST00000574662 CCDC57Q2TAC2 916 aa19.62■□□□□ 0.73
SMPD3-212ENST00000574662 CCDC152Q4G0S7 254 aa19.62■□□□□ 0.73
SMPD3-212ENST00000574662 COPRSQ9NQ92 184 aa19.62■□□□□ 0.73
SMPD3-212ENST00000574662 SEC24BO95487 1268 aa19.62■□□□□ 0.73
SMPD3-212ENST00000574662 GCC1Q96CN9 775 aa19.62■□□□□ 0.73
SMPD3-212ENST00000574662 SIL1Q9H173 461 aa19.62■□□□□ 0.73
SMPD3-212ENST00000574662 LAMB2P55268 1798 aa19.61■□□□□ 0.73
SMPD3-212ENST00000574662 APBB1O00213 710 aa19.61■□□□□ 0.73
SMPD3-212ENST00000574662 BRIP1Q9BX63 1249 aa19.61■□□□□ 0.73
SMPD3-212ENST00000574662 TNRC6CQ9HCJ0 1690 aaKnown RBP19.61■□□□□ 0.73
SMPD3-212ENST00000574662 ANKRD18BA2A2Z9 1011 aa19.6■□□□□ 0.73
SMPD3-212ENST00000574662 KLRG2A4D1S0 409 aaPredicted RBP19.6■□□□□ 0.73
SMPD3-212ENST00000574662 PUS3Q9BZE2 481 aaKnown RBP19.6■□□□□ 0.73
SMPD3-212ENST00000574662 MYH3P11055 1940 aa19.6■□□□□ 0.73
SMPD3-212ENST00000574662 RIC1Q4ADV7 1423 aa19.6■□□□□ 0.73
SMPD3-212ENST00000574662 RTL9Q8NET4 1388 aa19.59■□□□□ 0.73
SMPD3-212ENST00000574662 CRY2Q49AN0 593 aa19.59■□□□□ 0.73
SMPD3-212ENST00000574662 ANKRD45Q5TZF3 282 aa19.59■□□□□ 0.73
SMPD3-212ENST00000574662 LRRC24Q50LG9 513 aa19.58■□□□□ 0.73
SMPD3-212ENST00000574662 SGIP1Q9BQI5 828 aa19.58■□□□□ 0.73
SMPD3-212ENST00000574662 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP19.58■□□□□ 0.73
SMPD3-212ENST00000574662 COL4A1P02462 1669 aa19.58■□□□□ 0.72
SMPD3-212ENST00000574662 SMARCA5O60264 1052 aaPredicted RBP19.57■□□□□ 0.72
SMPD3-212ENST00000574662 FRAT2O75474 233 aaPredicted RBP19.57■□□□□ 0.72
SMPD3-212ENST00000574662 G3BP1Q13283 466 aaKnown RBP eCLIP19.57■□□□□ 0.72
SMPD3-212ENST00000574662 ATG9AQ7Z3C6 839 aa19.57■□□□□ 0.72
SMPD3-212ENST00000574662 SASH1O94885 1247 aa19.57■□□□□ 0.72
SMPD3-212ENST00000574662 NUCB1Q02818 461 aa19.57■□□□□ 0.72
SMPD3-212ENST00000574662 TAF7LQ5H9L4 462 aa19.57■□□□□ 0.72
SMPD3-212ENST00000574662 CELF1Q92879 486 aaKnown RBP19.57■□□□□ 0.72
SMPD3-212ENST00000574662 SRCAPQ6ZRS2 3230 aa19.56■□□□□ 0.72
SMPD3-212ENST00000574662 ANKRD31Q8N7Z5 1873 aa19.56■□□□□ 0.72
SMPD3-212ENST00000574662 EYA2O00167 538 aa19.56■□□□□ 0.72
SMPD3-212ENST00000574662 RAB11FIP3O75154 756 aa19.56■□□□□ 0.72
SMPD3-212ENST00000574662 PTGER2P43116 358 aa19.56■□□□□ 0.72
SMPD3-212ENST00000574662 PDE6BP35913 854 aa19.55■□□□□ 0.72
SMPD3-212ENST00000574662 LDHAL6AQ6ZMR3 332 aa19.55■□□□□ 0.72
SMPD3-212ENST00000574662 DDX46Q7L014 1031 aaKnown RBP19.55■□□□□ 0.72
SMPD3-212ENST00000574662 RHPN1Q8TCX5 695 aa19.55■□□□□ 0.72
SMPD3-212ENST00000574662 RIPOR2Q9Y4F9 1068 aa19.55■□□□□ 0.72
SMPD3-212ENST00000574662 TAF1P21675 1872 aa19.55■□□□□ 0.72
SMPD3-212ENST00000574662 SRGNP10124 158 aa19.55■□□□□ 0.72
SMPD3-212ENST00000574662 POLD1P28340 1107 aa19.55■□□□□ 0.72
SMPD3-212ENST00000574662 HOXA10P31260 410 aaPredicted RBP19.55■□□□□ 0.72
SMPD3-212ENST00000574662 OS9Q13438 667 aaPredicted RBP19.55■□□□□ 0.72
SMPD3-212ENST00000574662 HSP90AB4PQ58FF6 505 aa19.55■□□□□ 0.72
SMPD3-212ENST00000574662 CIAO1O76071 339 aa19.54■□□□□ 0.72
SMPD3-212ENST00000574662 RPS8P62241 208 aaKnown RBP19.54■□□□□ 0.72
SMPD3-212ENST00000574662 CHD1LQ86WJ1 897 aa19.54■□□□□ 0.72
SMPD3-212ENST00000574662 C16orf71Q8IYS4 520 aaPredicted RBP19.54■□□□□ 0.72
SMPD3-212ENST00000574662 RPGRQ92834 1020 aaKnown RBP19.54■□□□□ 0.72
SMPD3-212ENST00000574662 LRRCC1Q9C099 1032 aa19.54■□□□□ 0.72
SMPD3-212ENST00000574662 LNPKQ9C0E8 428 aa19.54■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms