RNA–Protein interactions for RNA: ENST00000573936.5

CHD3-216, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 3

Gene CHD3, Length 749 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-216ENST00000573936 ALDH1L1O75891 902 aa13.97□□□□□ -0.17
CHD3-216ENST00000573936 HCLS1P14317 486 aaPredicted RBP13.97□□□□□ -0.17
CHD3-216ENST00000573936 PRELPP51888 382 aa13.97□□□□□ -0.17
CHD3-216ENST00000573936 GCKRQ14397 625 aa13.97□□□□□ -0.17
CHD3-216ENST00000573936 CWF19L2Q2TBE0 894 aaKnown RBP13.97□□□□□ -0.17
CHD3-216ENST00000573936 DPY19L2Q6NUT2 758 aa13.97□□□□□ -0.17
CHD3-216ENST00000573936 SLC4A10Q6U841 1118 aa13.97□□□□□ -0.17
CHD3-216ENST00000573936 ARHGAP45Q92619 1136 aa13.97□□□□□ -0.17
CHD3-216ENST00000573936 SRCIN1Q9C0H9 1055 aa13.97□□□□□ -0.17
CHD3-216ENST00000573936 NOB1Q9ULX3 412 aaKnown RBP13.97□□□□□ -0.17
CHD3-216ENST00000573936 CDHR2Q9BYE9 1310 aa13.96□□□□□ -0.17
CHD3-216ENST00000573936 GLTPD2A6NH11 291 aa13.96□□□□□ -0.17
CHD3-216ENST00000573936 H7C1W4 665 aa13.96□□□□□ -0.17
CHD3-216ENST00000573936 PDE8AO60658 829 aa13.96□□□□□ -0.17
CHD3-216ENST00000573936 HOXA10P31260 410 aaPredicted RBP13.96□□□□□ -0.17
CHD3-216ENST00000573936 SYNE4Q8N205 404 aa13.96□□□□□ -0.17
CHD3-216ENST00000573936 CRAMP1Q96RY5 1269 aa13.96□□□□□ -0.17
CHD3-216ENST00000573936 NFKBIEO00221 500 aa13.95□□□□□ -0.18
CHD3-216ENST00000573936 SF3B3Q15393 1217 aaKnown RBP13.95□□□□□ -0.18
CHD3-216ENST00000573936 RTL5Q5HYW3 569 aaPredicted RBP13.95□□□□□ -0.18
CHD3-216ENST00000573936 SOGA3Q5TF21 947 aa13.95□□□□□ -0.18
CHD3-216ENST00000573936 DDX46Q7L014 1031 aaKnown RBP13.95□□□□□ -0.18
CHD3-216ENST00000573936 ZNF219Q9P2Y4 722 aaPredicted RBP13.95□□□□□ -0.18
CHD3-216ENST00000573936 BCAR3O75815 825 aa13.94□□□□□ -0.18
CHD3-216ENST00000573936 PRPF40BQ6NWY9 871 aaKnown RBP13.94□□□□□ -0.18
CHD3-216ENST00000573936 C9orf78Q9NZ63 289 aaPredicted RBP13.94□□□□□ -0.18
CHD3-216ENST00000573936 FER1L6Q2WGJ9 1857 aa13.93□□□□□ -0.18
CHD3-216ENST00000573936 HSPA1AP0DMV8 641 aaKnown RBP13.93□□□□□ -0.18
CHD3-216ENST00000573936 HSPA1BP0DMV9 641 aaKnown RBP13.93□□□□□ -0.18
CHD3-216ENST00000573936 CCT4P50991 539 aaKnown RBP13.93□□□□□ -0.18
CHD3-216ENST00000573936 CCDC152Q4G0S7 254 aa13.93□□□□□ -0.18
CHD3-216ENST00000573936 C3orf67Q6ZVT6 689 aa13.93□□□□□ -0.18
CHD3-216ENST00000573936 UBE3BQ7Z3V4 1068 aa13.93□□□□□ -0.18
CHD3-216ENST00000573936 TMX4Q9H1E5 349 aaPredicted RBP13.93□□□□□ -0.18
CHD3-216ENST00000573936 GRM8O00222 908 aa13.92□□□□□ -0.18
CHD3-216ENST00000573936 C21orf2O43822 256 aa13.92□□□□□ -0.18
CHD3-216ENST00000573936 BBOX1O75936 387 aa13.92□□□□□ -0.18
CHD3-216ENST00000573936 CC2D2BQ6DHV5 1058 aa13.92□□□□□ -0.18
CHD3-216ENST00000573936 JARID2Q92833 1246 aaPredicted RBP13.92□□□□□ -0.18
CHD3-216ENST00000573936 FRAT1Q92837 279 aaPredicted RBP13.92□□□□□ -0.18
CHD3-216ENST00000573936 PLA2G12BQ9BX93 195 aa13.92□□□□□ -0.18
CHD3-216ENST00000573936 SLX4Q8IY92 1834 aa13.92□□□□□ -0.18
CHD3-216ENST00000573936 DICER1Q9UPY3 1922 aaKnown RBP13.92□□□□□ -0.18
CHD3-216ENST00000573936 CASP7P55210 303 aa13.91□□□□□ -0.18
CHD3-216ENST00000573936 GRAPQ13588 217 aa13.91□□□□□ -0.18
CHD3-216ENST00000573936 GRIPAP1Q4V328 841 aa13.91□□□□□ -0.18
CHD3-216ENST00000573936 ZKSCAN2Q63HK3 967 aa13.91□□□□□ -0.18
CHD3-216ENST00000573936 ATF7IPQ6VMQ6 1270 aa13.91□□□□□ -0.18
CHD3-216ENST00000573936 TMC4Q7Z404 712 aa13.91□□□□□ -0.18
CHD3-216ENST00000573936 GRAPLQ8TC17 118 aaPredicted RBP13.91□□□□□ -0.18
CHD3-216ENST00000573936 PPEF1O14829 653 aaPredicted RBP13.9□□□□□ -0.18
CHD3-216ENST00000573936 CTSWP56202 376 aa13.9□□□□□ -0.18
CHD3-216ENST00000573936 CCDC93Q567U6 631 aa13.9□□□□□ -0.18
CHD3-216ENST00000573936 RTKN2Q8IZC4 609 aa13.9□□□□□ -0.18
CHD3-216ENST00000573936 C7orf43Q8WVR3 580 aa13.9□□□□□ -0.18
CHD3-216ENST00000573936 HDAC5Q9UQL6 1122 aa13.9□□□□□ -0.18
CHD3-216ENST00000573936 ABCC4O15439 1325 aa13.9□□□□□ -0.19
CHD3-216ENST00000573936 TTLL11Q8NHH1 800 aa13.89□□□□□ -0.19
CHD3-216ENST00000573936 RCAN3Q9UKA8 241 aa13.89□□□□□ -0.19
CHD3-216ENST00000573936 UTYO14607 1347 aa13.89□□□□□ -0.19
CHD3-216ENST00000573936 DDX60Q8IY21 1712 aaKnown RBP13.88□□□□□ -0.19
CHD3-216ENST00000573936 CSF1RP07333 972 aa13.88□□□□□ -0.19
CHD3-216ENST00000573936 MS4A1P11836 297 aa13.88□□□□□ -0.19
CHD3-216ENST00000573936 TRIM27P14373 513 aa13.88□□□□□ -0.19
CHD3-216ENST00000573936 INTS3Q68E01 1043 aaKnown RBP13.88□□□□□ -0.19
CHD3-216ENST00000573936 SP8Q8IXZ3 490 aa13.88□□□□□ -0.19
CHD3-216ENST00000573936 CDC5LQ99459 802 aaKnown RBP13.88□□□□□ -0.19
CHD3-216ENST00000573936 TAOK3Q9H2K8 898 aa13.88□□□□□ -0.19
CHD3-216ENST00000573936 LAMB2P55268 1798 aa13.88□□□□□ -0.19
CHD3-216ENST00000573936 RTL9Q8NET4 1388 aa13.87□□□□□ -0.19
CHD3-216ENST00000573936 RPS8P62241 208 aaKnown RBP13.87□□□□□ -0.19
CHD3-216ENST00000573936 USP44Q9H0E7 712 aa13.87□□□□□ -0.19
CHD3-216ENST00000573936 ATP6V0A2Q9Y487 856 aa13.87□□□□□ -0.19
CHD3-216ENST00000573936 LTBP3Q9NS15 1303 aa13.87□□□□□ -0.19
CHD3-216ENST00000573936 NBPF7P0C2Y1 421 aaPredicted RBP13.86□□□□□ -0.19
CHD3-216ENST00000573936 FKBP4Q02790 459 aaKnown RBP eCLIP13.86□□□□□ -0.19
CHD3-216ENST00000573936 CHADLQ6NUI6 762 aa13.86□□□□□ -0.19
CHD3-216ENST00000573936 ANKRD18AQ8IVF6 992 aa13.86□□□□□ -0.19
CHD3-216ENST00000573936 FTSJ3Q8IY81 847 aaKnown RBP13.86□□□□□ -0.19
CHD3-216ENST00000573936 DZIP1LQ8IYY4 767 aaKnown RBP13.86□□□□□ -0.19
CHD3-216ENST00000573936 GOLGA6L2Q8N9W4 650 aaPredicted RBP13.86□□□□□ -0.19
CHD3-216ENST00000573936 CREBZFQ9NS37 354 aa13.86□□□□□ -0.19
CHD3-216ENST00000573936 ANKRD18BA2A2Z9 1011 aa13.85□□□□□ -0.19
CHD3-216ENST00000573936 GNAI3P08754 354 aa13.85□□□□□ -0.19
CHD3-216ENST00000573936 IGHMBP2P38935 993 aaKnown RBP13.85□□□□□ -0.19
CHD3-216ENST00000573936 FOXO4P98177 505 aa13.85□□□□□ -0.19
CHD3-216ENST00000573936 SUPT20HQ8NEM7 779 aa13.85□□□□□ -0.19
CHD3-216ENST00000573936 CELF1Q92879 486 aaKnown RBP13.85□□□□□ -0.19
CHD3-216ENST00000573936 CLUAP1Q96AJ1 413 aa13.85□□□□□ -0.19
CHD3-216ENST00000573936 SUCLG2Q96I99 432 aa13.85□□□□□ -0.19
CHD3-216ENST00000573936 CCDC85AQ96PX6 553 aaPredicted RBP13.85□□□□□ -0.19
CHD3-216ENST00000573936 PSMD1Q99460 953 aa13.85□□□□□ -0.19
CHD3-216ENST00000573936 GREM2Q9H772 168 aa13.85□□□□□ -0.19
CHD3-216ENST00000573936 SEC31BQ9NQW1 1179 aa13.85□□□□□ -0.19
CHD3-216ENST00000573936 MKRN1Q9UHC7 482 aaKnown RBP13.85□□□□□ -0.19
CHD3-216ENST00000573936 POTECB2RU33 542 aa13.84□□□□□ -0.19
CHD3-216ENST00000573936 UBTFL1P0CB47 393 aaPredicted RBP13.84□□□□□ -0.19
CHD3-216ENST00000573936 ITGA6P23229 1130 aa13.84□□□□□ -0.19
CHD3-216ENST00000573936 IFIT5Q13325 482 aaKnown RBP13.84□□□□□ -0.19
CHD3-216ENST00000573936 LMBR1LQ6UX01 489 aa13.84□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms