RNA–Protein interactions for RNA: ENST00000573028.5

VPS53-215, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 2

Gene VPS53, Length 3,204 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-215ENST00000573028 XAGE3Q8WTP9 111 aa20.25■□□□□ 0.83
VPS53-215ENST00000573028 ORAI2Q96SN7 254 aa20.25■□□□□ 0.83
VPS53-215ENST00000573028 DDX21Q9NR30 783 aaKnown RBP eCLIP20.25■□□□□ 0.83
VPS53-215ENST00000573028 COPS6Q7L5N1 327 aa20.25■□□□□ 0.83
VPS53-215ENST00000573028 MTERF4Q7Z6M4 381 aaKnown RBP20.25■□□□□ 0.83
VPS53-215ENST00000573028 KIAA1524Q8TCG1 905 aa20.25■□□□□ 0.83
VPS53-215ENST00000573028 CHAF1AQ13111 956 aaPredicted RBP20.25■□□□□ 0.83
VPS53-215ENST00000573028 LRMPQ12912 555 aa20.24■□□□□ 0.83
VPS53-215ENST00000573028 CCDC186Q7Z3E2 898 aa20.24■□□□□ 0.83
VPS53-215ENST00000573028 LEO1Q8WVC0 666 aaPredicted RBP20.24■□□□□ 0.83
VPS53-215ENST00000573028 ZC3H6P61129 1189 aaKnown RBP20.24■□□□□ 0.83
VPS53-215ENST00000573028 SCAND2PQ9GZW5 306 aaPredicted RBP20.24■□□□□ 0.83
VPS53-215ENST00000573028 CBX8Q9HC52 389 aa20.24■□□□□ 0.83
VPS53-215ENST00000573028 NR1I2O75469 434 aa20.23■□□□□ 0.83
VPS53-215ENST00000573028 BRF1Q92994 677 aa20.23■□□□□ 0.83
VPS53-215ENST00000573028 NRBP1Q9UHY1 535 aa20.23■□□□□ 0.83
VPS53-215ENST00000573028 AXIN2Q9Y2T1 843 aa20.23■□□□□ 0.83
VPS53-215ENST00000573028 DDX46Q7L014 1031 aaKnown RBP20.23■□□□□ 0.83
VPS53-215ENST00000573028 ATP5J2-PTCD1G3V325 749 aa20.23■□□□□ 0.83
VPS53-215ENST00000573028 PTCD1O75127 700 aaKnown RBP20.23■□□□□ 0.83
VPS53-215ENST00000573028 ZNF710Q8N1W2 664 aa20.23■□□□□ 0.83
VPS53-215ENST00000573028 DNAJC25Q9H1X3 360 aa20.23■□□□□ 0.83
VPS53-215ENST00000573028 SPTLC3Q9NUV7 552 aa20.23■□□□□ 0.83
VPS53-215ENST00000573028 TAF5LO75529 589 aa20.22■□□□□ 0.83
VPS53-215ENST00000573028 TFCP2Q12800 502 aa20.22■□□□□ 0.83
VPS53-215ENST00000573028 Q6ZUG5 572 aa20.22■□□□□ 0.83
VPS53-215ENST00000573028 UBE3BQ7Z3V4 1068 aa20.21■□□□□ 0.83
VPS53-215ENST00000573028 NEK1Q96PY6 1258 aa20.21■□□□□ 0.83
VPS53-215ENST00000573028 DBNLQ9UJU6 430 aaKnown RBP20.21■□□□□ 0.83
VPS53-215ENST00000573028 NEURL1BA8MQ27 555 aa20.21■□□□□ 0.83
VPS53-215ENST00000573028 RIOK3O14730 519 aaKnown RBP20.21■□□□□ 0.83
VPS53-215ENST00000573028 SLFNL1Q499Z3 407 aa20.21■□□□□ 0.83
VPS53-215ENST00000573028 NFATC2IPQ8NCF5 419 aa20.21■□□□□ 0.83
VPS53-215ENST00000573028 LTN1O94822 1766 aa20.21■□□□□ 0.83
VPS53-215ENST00000573028 PDIA6Q15084 440 aa20.21■□□□□ 0.83
VPS53-215ENST00000573028 FBXW7Q969H0 707 aa20.21■□□□□ 0.83
VPS53-215ENST00000573028 NPHP3Q7Z494 1330 aa20.2■□□□□ 0.82
VPS53-215ENST00000573028 ARHGAP23Q9P227 1491 aa20.2■□□□□ 0.82
VPS53-215ENST00000573028 N4BP2Q86UW6 1770 aaPredicted RBP20.2■□□□□ 0.82
VPS53-215ENST00000573028 GCKRQ14397 625 aa20.2■□□□□ 0.82
VPS53-215ENST00000573028 C16orf45Q96MC5 204 aaPredicted RBP20.2■□□□□ 0.82
VPS53-215ENST00000573028 BCL2L12Q9HB09 334 aa20.2■□□□□ 0.82
VPS53-215ENST00000573028 NLRP2Q9NX02 1062 aa20.2■□□□□ 0.82
VPS53-215ENST00000573028 ZNF165P49910 485 aa20.2■□□□□ 0.82
VPS53-215ENST00000573028 CBX1P83916 185 aa20.2■□□□□ 0.82
VPS53-215ENST00000573028 PGBD1Q96JS3 809 aa20.2■□□□□ 0.82
VPS53-215ENST00000573028 NPHP4O75161 1426 aaPredicted RBP20.19■□□□□ 0.82
VPS53-215ENST00000573028 ARHGEF25Q86VW2 580 aa20.19■□□□□ 0.82
VPS53-215ENST00000573028 DBNDD2Q9BQY9 259 aa20.19■□□□□ 0.82
VPS53-215ENST00000573028 SLIT1O75093 1534 aa20.19■□□□□ 0.82
VPS53-215ENST00000573028 ZNF790Q6PG37 636 aa20.19■□□□□ 0.82
VPS53-215ENST00000573028 A0A087WWV3 80 aa20.19■□□□□ 0.82
VPS53-215ENST00000573028 NEUROD6Q96NK8 337 aa20.19■□□□□ 0.82
VPS53-215ENST00000573028 FTOQ9C0B1 505 aaKnown RBP eCLIP20.19■□□□□ 0.82
VPS53-215ENST00000573028 MARF1Q9Y4F3 1742 aaKnown RBP20.19■□□□□ 0.82
VPS53-215ENST00000573028 ELP1O95163 1332 aa20.19■□□□□ 0.82
VPS53-215ENST00000573028 RGPD2P0DJD1 1756 aa20.19■□□□□ 0.82
VPS53-215ENST00000573028 DDX19AQ9NUU7 478 aaKnown RBP20.18■□□□□ 0.82
VPS53-215ENST00000573028 TPM3P06753 285 aa20.18■□□□□ 0.82
VPS53-215ENST00000573028 GUCY1B3Q02153 619 aa20.18■□□□□ 0.82
VPS53-215ENST00000573028 PPP4R3BQ5MIZ7 849 aa20.18■□□□□ 0.82
VPS53-215ENST00000573028 CCDC94Q9BW85 323 aaPredicted RBP20.18■□□□□ 0.82
VPS53-215ENST00000573028 HMG20BQ9P0W2 317 aa20.18■□□□□ 0.82
VPS53-215ENST00000573028 MED23Q9ULK4 1368 aa20.18■□□□□ 0.82
VPS53-215ENST00000573028 RAPGEF4Q8WZA2 1011 aa20.17■□□□□ 0.82
VPS53-215ENST00000573028 CCT2P78371 535 aaKnown RBP20.17■□□□□ 0.82
VPS53-215ENST00000573028 TNNI3KQ59H18 835 aa20.17■□□□□ 0.82
VPS53-215ENST00000573028 GTF3C6Q969F1 213 aa20.17■□□□□ 0.82
VPS53-215ENST00000573028 CLSTN2Q9H4D0 955 aa20.17■□□□□ 0.82
VPS53-215ENST00000573028 TAOK2Q9UL54 1235 aa20.17■□□□□ 0.82
VPS53-215ENST00000573028 USP16Q9Y5T5 823 aa20.17■□□□□ 0.82
VPS53-215ENST00000573028 FPGT-TNNI3KV9GXZ4 949 aa20.17■□□□□ 0.82
VPS53-215ENST00000573028 CYP21A2P08686 494 aa20.17■□□□□ 0.82
VPS53-215ENST00000573028 ANKRD13DQ6ZTN6 518 aa20.17■□□□□ 0.82
VPS53-215ENST00000573028 ZNF496Q96IT1 587 aaPredicted RBP20.17■□□□□ 0.82
VPS53-215ENST00000573028 MED1Q15648 1581 aaPredicted RBP20.16■□□□□ 0.82
VPS53-215ENST00000573028 SPDYE4A6NLX3 237 aa20.16■□□□□ 0.82
VPS53-215ENST00000573028 COL15A1P39059 1388 aa20.16■□□□□ 0.82
VPS53-215ENST00000573028 KRT32Q14532 448 aa20.15■□□□□ 0.82
VPS53-215ENST00000573028 CHST3Q7LGC8 479 aa20.15■□□□□ 0.82
VPS53-215ENST00000573028 KDM3BQ7LBC6 1761 aa20.15■□□□□ 0.82
VPS53-215ENST00000573028 A0A087WZG4 1122 aa20.15■□□□□ 0.82
VPS53-215ENST00000573028 ZNF592Q92610 1267 aa20.15■□□□□ 0.82
VPS53-215ENST00000573028 ERCC4Q92889 916 aaPredicted RBP20.15■□□□□ 0.82
VPS53-215ENST00000573028 METTL22Q9BUU2 404 aaPredicted RBP20.15■□□□□ 0.82
VPS53-215ENST00000573028 CLIP2Q9UDT6 1046 aa20.15■□□□□ 0.82
VPS53-215ENST00000573028 UTYO14607 1347 aa20.14■□□□□ 0.82
VPS53-215ENST00000573028 ZNF75DP51815 510 aa20.14■□□□□ 0.82
VPS53-215ENST00000573028 PTPN12Q05209 780 aaKnown RBP20.14■□□□□ 0.82
VPS53-215ENST00000573028 KIF13AQ9H1H9 1805 aa20.14■□□□□ 0.81
VPS53-215ENST00000573028 NFAT5O94916 1531 aa20.14■□□□□ 0.81
VPS53-215ENST00000573028 GOLGA6L19H0YKK7 550 aa20.14■□□□□ 0.81
VPS53-215ENST00000573028 APOBRQ0VD83 1088 aa20.14■□□□□ 0.81
VPS53-215ENST00000573028 SCRN1Q12765 414 aa20.14■□□□□ 0.81
VPS53-215ENST00000573028 NCOA5Q9HCD5 579 aaKnown RBP20.14■□□□□ 0.81
VPS53-215ENST00000573028 CSB-PGBD3P0DP91 1061 aa20.14■□□□□ 0.81
VPS53-215ENST00000573028 ATP5JP18859 108 aa20.14■□□□□ 0.81
VPS53-215ENST00000573028 RESTQ13127 1097 aa20.14■□□□□ 0.81
VPS53-215ENST00000573028 TTC5Q8N0Z6 440 aa20.14■□□□□ 0.81
VPS53-215ENST00000573028 CRYBG1Q9Y4K1 1723 aa20.13■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms