RNA–Protein interactions for RNA: ENST00000572607.1

VPS53-214, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 732 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-214ENST00000572607 ZNF622Q969S3 477 aaKnown RBP eCLIP10.5□□□□□ -0.732e-7■■■■□ 24.6
VPS53-214ENST00000572607 CHMP4AQ9BY43 222 aa10.5□□□□□ -0.73
VPS53-214ENST00000572607 NYXQ9GZU5 481 aa10.5□□□□□ -0.73
VPS53-214ENST00000572607 ZBTB3Q9H5J0 574 aa10.5□□□□□ -0.73
VPS53-214ENST00000572607 BCORQ6W2J9 1755 aa10.49□□□□□ -0.73
VPS53-214ENST00000572607 ANKRD31Q8N7Z5 1873 aa10.49□□□□□ -0.73
VPS53-214ENST00000572607 DICER1Q9UPY3 1922 aaKnown RBP10.49□□□□□ -0.73
VPS53-214ENST00000572607 FAM177BA6PVY3 158 aa10.49□□□□□ -0.73
VPS53-214ENST00000572607 HLFQ16534 295 aa10.49□□□□□ -0.73
VPS53-214ENST00000572607 HSP90AB3PQ58FF7 597 aa10.49□□□□□ -0.73
VPS53-214ENST00000572607 TTLL7Q6ZT98 887 aa10.49□□□□□ -0.73
VPS53-214ENST00000572607 CCDC24Q8N4L8 307 aa10.49□□□□□ -0.73
VPS53-214ENST00000572607 MBIPQ9NS73 344 aa10.49□□□□□ -0.73
VPS53-214ENST00000572607 FSTL1Q12841 308 aa10.48□□□□□ -0.73
VPS53-214ENST00000572607 AIMP1Q12904 312 aaKnown RBP10.48□□□□□ -0.73
VPS53-214ENST00000572607 CCDC27Q2M243 656 aa10.48□□□□□ -0.73
VPS53-214ENST00000572607 CNKSR1Q969H4 720 aa10.48□□□□□ -0.73
VPS53-214ENST00000572607 ZSWIM6Q9HCJ5 1215 aa10.48□□□□□ -0.73
VPS53-214ENST00000572607 DDX21Q9NR30 783 aaKnown RBP eCLIP10.48□□□□□ -0.73
VPS53-214ENST00000572607 FER1L6Q2WGJ9 1857 aa10.47□□□□□ -0.73
VPS53-214ENST00000572607 ANXA1P04083 346 aa10.47□□□□□ -0.73
VPS53-214ENST00000572607 ZNF853P0CG23 659 aa10.47□□□□□ -0.73
VPS53-214ENST00000572607 GPTP24298 496 aa10.47□□□□□ -0.73
VPS53-214ENST00000572607 PDIA6Q15084 440 aa10.47□□□□□ -0.73
VPS53-214ENST00000572607 KRT24Q2M2I5 525 aa10.47□□□□□ -0.73
VPS53-214ENST00000572607 PARP10Q53GL7 1025 aa10.47□□□□□ -0.73
VPS53-214ENST00000572607 DUSP27Q5VZP5 1158 aa10.47□□□□□ -0.73
VPS53-214ENST00000572607 STYK1Q6J9G0 422 aa10.47□□□□□ -0.73
VPS53-214ENST00000572607 GIGYF2Q6Y7W6 1299 aaKnown RBP10.47□□□□□ -0.73
VPS53-214ENST00000572607 PPP1R42Q7Z4L9 355 aa10.47□□□□□ -0.73
VPS53-214ENST00000572607 FAM9BQ8IZU0 186 aa10.47□□□□□ -0.73
VPS53-214ENST00000572607 XAGE3Q8WTP9 111 aa10.47□□□□□ -0.73
VPS53-214ENST00000572607 MASTLQ96GX5 879 aa10.47□□□□□ -0.73
VPS53-214ENST00000572607 RRAGCQ9HB90 399 aa10.47□□□□□ -0.73
VPS53-214ENST00000572607 CHPF2Q9P2E5 772 aa10.47□□□□□ -0.73
VPS53-214ENST00000572607 DBF4Q9UBU7 674 aaPredicted RBP10.47□□□□□ -0.73
VPS53-214ENST00000572607 COL11A2P13942 1736 aaPredicted RBP10.47□□□□□ -0.73
VPS53-214ENST00000572607 NPR1P16066 1061 aa10.46□□□□□ -0.73
VPS53-214ENST00000572607 RASSF7Q02833 373 aa10.46□□□□□ -0.73
VPS53-214ENST00000572607 PROSER3Q2NL68 480 aa10.46□□□□□ -0.73
VPS53-214ENST00000572607 COPS6Q7L5N1 327 aa10.46□□□□□ -0.73
VPS53-214ENST00000572607 HYPKQ9NX55 129 aa10.46□□□□□ -0.73
VPS53-214ENST00000572607 RNF181Q9P0P0 153 aa10.46□□□□□ -0.73
VPS53-214ENST00000572607 IBTKQ9P2D0 1353 aaPredicted RBP10.46□□□□□ -0.74
VPS53-214ENST00000572607 POTECB2RU33 542 aa10.45□□□□□ -0.74
VPS53-214ENST00000572607 SRGNP10124 158 aa10.45□□□□□ -0.74
VPS53-214ENST00000572607 SOGA3Q5TF21 947 aa10.45□□□□□ -0.74
VPS53-214ENST00000572607 WWC1Q8IX03 1113 aa10.45□□□□□ -0.74
VPS53-214ENST00000572607 IL16Q14005 1332 aa10.44□□□□□ -0.74
VPS53-214ENST00000572607 KDM2BQ8NHM5 1336 aa10.44□□□□□ -0.74
VPS53-214ENST00000572607 ELL2O00472 640 aaPredicted RBP10.44□□□□□ -0.74
VPS53-214ENST00000572607 CCDC30Q5VVM6 783 aa10.44□□□□□ -0.74
VPS53-214ENST00000572607 LRP10Q7Z4F1 713 aa10.44□□□□□ -0.74
VPS53-214ENST00000572607 NUTM1Q86Y26 1132 aa10.44□□□□□ -0.74
VPS53-214ENST00000572607 ZNF34Q8IZ26 560 aa10.44□□□□□ -0.74
VPS53-214ENST00000572607 FBXO22Q8NEZ5 403 aa10.44□□□□□ -0.74
VPS53-214ENST00000572607 UTP14AQ9BVJ6 771 aaKnown RBP10.44□□□□□ -0.74
VPS53-214ENST00000572607 SALL2Q9Y467 1007 aaPredicted RBP10.44□□□□□ -0.74
VPS53-214ENST00000572607 CACNA1SQ13698 1873 aa10.43□□□□□ -0.74
VPS53-214ENST00000572607 RNF123Q5XPI4 1314 aa10.43□□□□□ -0.74
VPS53-214ENST00000572607 UBN2Q6ZU65 1347 aa10.43□□□□□ -0.74
VPS53-214ENST00000572607 C21orf2O43822 256 aa10.43□□□□□ -0.74
VPS53-214ENST00000572607 ALDH1B1P30837 517 aa10.43□□□□□ -0.74
VPS53-214ENST00000572607 ERFEQ4G0M1 354 aa10.43□□□□□ -0.74
VPS53-214ENST00000572607 SUSD4Q5VX71 490 aa10.43□□□□□ -0.74
VPS53-214ENST00000572607 GPR153Q6NV75 609 aa10.43□□□□□ -0.74
VPS53-214ENST00000572607 PRPF40BQ6NWY9 871 aaKnown RBP10.43□□□□□ -0.74
VPS53-214ENST00000572607 ANKRD13DQ6ZTN6 518 aa10.43□□□□□ -0.74
VPS53-214ENST00000572607 WDR63Q8IWG1 891 aa10.43□□□□□ -0.74
VPS53-214ENST00000572607 TNS4Q8IZW8 715 aa10.43□□□□□ -0.74
VPS53-214ENST00000572607 PLBD2Q8NHP8 589 aa10.43□□□□□ -0.74
VPS53-214ENST00000572607 RPGRQ92834 1020 aaKnown RBP10.43□□□□□ -0.74
VPS53-214ENST00000572607 TSR2Q969E8 191 aaKnown RBP10.43□□□□□ -0.74
VPS53-214ENST00000572607 STK31Q9BXU1 1019 aa10.43□□□□□ -0.74
VPS53-214ENST00000572607 ARFGEF2Q9Y6D5 1785 aa10.42□□□□□ -0.74
VPS53-214ENST00000572607 ABCC12Q96J65 1359 aa10.42□□□□□ -0.74
VPS53-214ENST00000572607 KLRG2A4D1S0 409 aaPredicted RBP10.42□□□□□ -0.74
VPS53-214ENST00000572607 NFKBIEO00221 500 aa10.42□□□□□ -0.74
VPS53-214ENST00000572607 NTSR2O95665 410 aa10.42□□□□□ -0.74
VPS53-214ENST00000572607 DDX58O95786 925 aaKnown RBP10.42□□□□□ -0.74
VPS53-214ENST00000572607 HSPA1AP0DMV8 641 aaKnown RBP10.42□□□□□ -0.74
VPS53-214ENST00000572607 HSPA1BP0DMV9 641 aaKnown RBP10.42□□□□□ -0.74
VPS53-214ENST00000572607 LMNB1P20700 586 aa10.42□□□□□ -0.74
VPS53-214ENST00000572607 TCIRG1Q13488 830 aa10.42□□□□□ -0.74
VPS53-214ENST00000572607 RIC3Q7Z5B4 369 aa10.42□□□□□ -0.74
VPS53-214ENST00000572607 C8orf58Q8NAV2 365 aa10.42□□□□□ -0.74
VPS53-214ENST00000572607 SMC1BQ8NDV3 1235 aa10.42□□□□□ -0.74
VPS53-214ENST00000572607 NLRP3Q96P20 1036 aa10.42□□□□□ -0.74
VPS53-214ENST00000572607 TMX4Q9H1E5 349 aaPredicted RBP10.42□□□□□ -0.74
VPS53-214ENST00000572607 TAOK3Q9H2K8 898 aa10.42□□□□□ -0.74
VPS53-214ENST00000572607 ZC3H4Q9UPT8 1303 aaKnown RBP10.41□□□□□ -0.74
VPS53-214ENST00000572607 GLTPD2A6NH11 291 aa10.41□□□□□ -0.74
VPS53-214ENST00000572607 TWISTNBQ3B726 338 aaPredicted RBP10.41□□□□□ -0.74
VPS53-214ENST00000572607 CCDC93Q567U6 631 aa10.41□□□□□ -0.74
VPS53-214ENST00000572607 NLRP10Q86W26 655 aa10.41□□□□□ -0.74
VPS53-214ENST00000572607 C16orf71Q8IYS4 520 aaPredicted RBP10.41□□□□□ -0.74
VPS53-214ENST00000572607 RBM17Q96I25 401 aaKnown RBP10.41□□□□□ -0.74
VPS53-214ENST00000572607 MYH16Q9H6N6 1097 aa10.41□□□□□ -0.74
VPS53-214ENST00000572607 TRMT112Q9UI30 125 aaKnown RBP10.41□□□□□ -0.74
VPS53-214ENST00000572607 STK24Q9Y6E0 443 aa10.41□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms