RNA–Protein interactions for RNA: ENST00000570650.1

VPS53-208, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 2

Gene VPS53, Length 729 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-208ENST00000570650 KIF20BQ96Q89 1820 aa8.11□□□□□ -1.11
VPS53-208ENST00000570650 POTECB2RU33 542 aa8.11□□□□□ -1.11
VPS53-208ENST00000570650 HSP90AB1P08238 724 aaKnown RBP8.11□□□□□ -1.11
VPS53-208ENST00000570650 TM4SF1P30408 202 aa8.11□□□□□ -1.11
VPS53-208ENST00000570650 CRKLP46109 303 aaKnown RBP8.11□□□□□ -1.11
VPS53-208ENST00000570650 SLC4A3P48751 1232 aa8.11□□□□□ -1.11
VPS53-208ENST00000570650 DAXXQ9UER7 740 aaPredicted RBP8.11□□□□□ -1.11
VPS53-208ENST00000570650 TIAM2Q8IVF5 1701 aa8.1□□□□□ -1.11
VPS53-208ENST00000570650 CABP4P57796 275 aa8.1□□□□□ -1.11
VPS53-208ENST00000570650 MDM2Q00987 491 aaPredicted RBP8.1□□□□□ -1.11
VPS53-208ENST00000570650 TTLL6Q8N841 843 aa8.1□□□□□ -1.11
VPS53-208ENST00000570650 DDX11L8A8MPP1 907 aa8.09□□□□□ -1.11
VPS53-208ENST00000570650 NFKBIEO00221 500 aa8.09□□□□□ -1.11
VPS53-208ENST00000570650 PTCD1O75127 700 aaKnown RBP8.09□□□□□ -1.11
VPS53-208ENST00000570650 ZPR1O75312 459 aa8.09□□□□□ -1.11
VPS53-208ENST00000570650 CFHP08603 1231 aa8.09□□□□□ -1.11
VPS53-208ENST00000570650 LBX1P52954 281 aa8.09□□□□□ -1.11
VPS53-208ENST00000570650 ANKRD26Q9UPS8 1709 aa8.09□□□□□ -1.11
VPS53-208ENST00000570650 CCDC88AQ3V6T2 1871 aa8.09□□□□□ -1.12
VPS53-208ENST00000570650 ITGBL1O95965 494 aaPredicted RBP8.08□□□□□ -1.12
VPS53-208ENST00000570650 NFIXQ14938 502 aa8.08□□□□□ -1.12
VPS53-208ENST00000570650 ERFEQ4G0M1 354 aa8.08□□□□□ -1.12
VPS53-208ENST00000570650 PLEKHO1Q53GL0 409 aaPredicted RBP8.08□□□□□ -1.12
VPS53-208ENST00000570650 USPL1Q5W0Q7 1092 aa8.08□□□□□ -1.12
VPS53-208ENST00000570650 NECTIN2Q92692 538 aa8.08□□□□□ -1.12
VPS53-208ENST00000570650 ABHD8Q96I13 439 aa8.08□□□□□ -1.12
VPS53-208ENST00000570650 DLEC1Q9Y238 1755 aa8.07□□□□□ -1.12
VPS53-208ENST00000570650 H0YIN7 160 aa8.07□□□□□ -1.12
VPS53-208ENST00000570650 SERPINB2P05120 415 aa8.07□□□□□ -1.12
VPS53-208ENST00000570650 VEGFBP49765 207 aa8.07□□□□□ -1.12
VPS53-208ENST00000570650 EIF4A2Q14240 407 aaKnown RBP8.07□□□□□ -1.12
VPS53-208ENST00000570650 TJAP1Q5JTD0 557 aa8.07□□□□□ -1.12
VPS53-208ENST00000570650 INTS5Q6P9B9 1019 aaKnown RBP8.07□□□□□ -1.12
VPS53-208ENST00000570650 C2CD5Q86YS7 1000 aa8.07□□□□□ -1.12
VPS53-208ENST00000570650 RDH13Q8NBN7 331 aa8.07□□□□□ -1.12
VPS53-208ENST00000570650 MTRQ99707 1265 aa8.07□□□□□ -1.12
VPS53-208ENST00000570650 REPIN1Q9BWE0 567 aaKnown RBP8.07□□□□□ -1.12
VPS53-208ENST00000570650 SLC24A3Q9HC58 644 aa8.07□□□□□ -1.12
VPS53-208ENST00000570650 ADAMTS7Q9UKP4 1686 aa8.07□□□□□ -1.12
VPS53-208ENST00000570650 TJP1Q07157 1748 aa8.06□□□□□ -1.12
VPS53-208ENST00000570650 NRXN2Q9P2S2 1712 aa8.06□□□□□ -1.12
VPS53-208ENST00000570650 SOS1Q07889 1333 aaPredicted RBP8.06□□□□□ -1.12
VPS53-208ENST00000570650 PASKQ96RG2 1323 aa8.06□□□□□ -1.12
VPS53-208ENST00000570650 AFDNP55196 1824 aaKnown RBP8.06□□□□□ -1.12
VPS53-208ENST00000570650 IQCA1LA6NCM1 817 aa8.06□□□□□ -1.12
VPS53-208ENST00000570650 TMEM88BA6NKF7 163 aa8.06□□□□□ -1.12
VPS53-208ENST00000570650 HSPA8P11142 646 aaKnown RBP8.06□□□□□ -1.12
VPS53-208ENST00000570650 MTHFSP49914 203 aa8.06□□□□□ -1.12
VPS53-208ENST00000570650 MLLT1Q03111 559 aaPredicted RBP8.06□□□□□ -1.12
VPS53-208ENST00000570650 AMOTQ4VCS5 1084 aa8.06□□□□□ -1.12
VPS53-208ENST00000570650 CDCA8Q53HL2 280 aa8.06□□□□□ -1.12
VPS53-208ENST00000570650 ZNF530Q6P9A1 599 aaPredicted RBP8.06□□□□□ -1.12
VPS53-208ENST00000570650 LDHDQ86WU2 507 aa8.06□□□□□ -1.12
VPS53-208ENST00000570650 TMUB1Q9BVT8 246 aa8.06□□□□□ -1.12
VPS53-208ENST00000570650 CARD14Q9BXL6 1004 aa8.06□□□□□ -1.12
VPS53-208ENST00000570650 POLKQ9UBT6 870 aa8.06□□□□□ -1.12
VPS53-208ENST00000570650 NARFQ9UHQ1 456 aa8.06□□□□□ -1.12
VPS53-208ENST00000570650 TRIM66O15016 1216 aa8.05□□□□□ -1.12
VPS53-208ENST00000570650 DDNO94850 711 aaPredicted RBP8.05□□□□□ -1.12
VPS53-208ENST00000570650 RGS19P49795 217 aa8.05□□□□□ -1.12
VPS53-208ENST00000570650 C1orf141Q5JVX7 400 aa8.05□□□□□ -1.12
VPS53-208ENST00000570650 DNAJC10Q8IXB1 793 aa8.05□□□□□ -1.12
VPS53-208ENST00000570650 NFATC2IPQ8NCF5 419 aa8.05□□□□□ -1.12
VPS53-208ENST00000570650 TAOK3Q9H2K8 898 aa8.05□□□□□ -1.12
VPS53-208ENST00000570650 GPCPD1Q9NPB8 672 aa8.05□□□□□ -1.12
VPS53-208ENST00000570650 PDZRN3Q9UPQ7 1066 aa8.05□□□□□ -1.12
VPS53-208ENST00000570650 DICER1Q9UPY3 1922 aaKnown RBP8.05□□□□□ -1.12
VPS53-208ENST00000570650 LTBP3Q9NS15 1303 aa8.04□□□□□ -1.12
VPS53-208ENST00000570650 VIRMAQ69YN4 1812 aaKnown RBP8.04□□□□□ -1.12
VPS53-208ENST00000570650 CCDC85CA6NKD9 419 aa8.04□□□□□ -1.12
VPS53-208ENST00000570650 ACTN4O43707 911 aaKnown RBP8.04□□□□□ -1.12
VPS53-208ENST00000570650 C21orf2O43822 256 aa8.04□□□□□ -1.12
VPS53-208ENST00000570650 CLCN1P35523 988 aa8.04□□□□□ -1.12
VPS53-208ENST00000570650 COPS2P61201 443 aa8.04□□□□□ -1.12
VPS53-208ENST00000570650 MAP2K1Q02750 393 aaPredicted RBP8.04□□□□□ -1.12
VPS53-208ENST00000570650 AMHR2Q16671 573 aa8.04□□□□□ -1.12
VPS53-208ENST00000570650 KMT5BQ4FZB7 885 aa8.04□□□□□ -1.12
VPS53-208ENST00000570650 SULF1Q8IWU6 871 aa8.04□□□□□ -1.12
VPS53-208ENST00000570650 ZNF516Q92618 1163 aa8.04□□□□□ -1.12
VPS53-208ENST00000570650 ZNF622Q969S3 477 aaKnown RBP eCLIP8.04□□□□□ -1.12
VPS53-208ENST00000570650 PRR14Q9BWN1 585 aa8.04□□□□□ -1.12
VPS53-208ENST00000570650 TAF1DQ9H5J8 278 aaPredicted RBP8.04□□□□□ -1.12
VPS53-208ENST00000570650 COL15A1P39059 1388 aa8.04□□□□□ -1.12
VPS53-208ENST00000570650 CARMIL3Q8ND23 1372 aa8.04□□□□□ -1.12
VPS53-208ENST00000570650 FER1L6Q2WGJ9 1857 aa8.04□□□□□ -1.12
VPS53-208ENST00000570650 RASSF10A6NK89 507 aa8.03□□□□□ -1.12
VPS53-208ENST00000570650 CYP19A1P11511 503 aaPredicted RBP8.03□□□□□ -1.12
VPS53-208ENST00000570650 CD46P15529 392 aa8.03□□□□□ -1.12
VPS53-208ENST00000570650 PDE6BP35913 854 aa8.03□□□□□ -1.12
VPS53-208ENST00000570650 KCNC4Q03721 635 aa8.03□□□□□ -1.12
VPS53-208ENST00000570650 BLOC1S3Q6QNY0 202 aa8.03□□□□□ -1.12
VPS53-208ENST00000570650 PCDHB3Q9Y5E6 796 aa8.03□□□□□ -1.12
VPS53-208ENST00000570650 SCN4AP35499 1836 aa8.02□□□□□ -1.13
VPS53-208ENST00000570650 GCGRP47871 477 aa8.02□□□□□ -1.13
VPS53-208ENST00000570650 DEFB115Q30KQ5 88 aa8.02□□□□□ -1.13
VPS53-208ENST00000570650 EAPPQ56P03 285 aaPredicted RBP8.02□□□□□ -1.13
VPS53-208ENST00000570650 SOGA3Q5TF21 947 aa8.02□□□□□ -1.13
VPS53-208ENST00000570650 BICDL1Q6ZP65 573 aa8.02□□□□□ -1.13
VPS53-208ENST00000570650 BRIP1Q9BX63 1249 aa8.02□□□□□ -1.13
VPS53-208ENST00000570650 IL21Q9HBE4 155 aa8.02□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms