RNA–Protein interactions for RNA: ENST00000570510.6

VPS53-207, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 570 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-207ENST00000570510 KIAA2012Q0VF49 1180 aa14.74□□□□□ -0.05
VPS53-207ENST00000570510 RBM26Q5T8P6 1007 aaKnown RBP14.74□□□□□ -0.05
VPS53-207ENST00000570510 SLC51AQ86UW1 340 aa14.74□□□□□ -0.05
VPS53-207ENST00000570510 PHACTR3Q96KR7 559 aa14.74□□□□□ -0.05
VPS53-207ENST00000570510 TBC1D10BQ4KMP7 808 aaPredicted RBP14.73□□□□□ -0.05
VPS53-207ENST00000570510 DLK2Q6UY11 383 aa14.73□□□□□ -0.05
VPS53-207ENST00000570510 SAMD7Q7Z3H4 446 aa14.73□□□□□ -0.05
VPS53-207ENST00000570510 SULF1Q8IWU6 871 aa14.73□□□□□ -0.05
VPS53-207ENST00000570510 CFAP53Q96M91 514 aa14.73□□□□□ -0.05
VPS53-207ENST00000570510 CSRNP1Q96S65 589 aa14.73□□□□□ -0.05
VPS53-207ENST00000570510 RTFDC1Q9BY42 306 aaPredicted RBP14.73□□□□□ -0.05
VPS53-207ENST00000570510 NUDCQ9Y266 331 aa14.73□□□□□ -0.05
VPS53-207ENST00000570510 SIPA1L3O60292 1781 aaPredicted RBP14.73□□□□□ -0.05
VPS53-207ENST00000570510 TAF7Q15545 349 aaPredicted RBP14.72□□□□□ -0.05
VPS53-207ENST00000570510 PARP10Q53GL7 1025 aa14.72□□□□□ -0.05
VPS53-207ENST00000570510 DDX46Q7L014 1031 aaKnown RBP14.72□□□□□ -0.05
VPS53-207ENST00000570510 SP8Q8IXZ3 490 aa14.72□□□□□ -0.05
VPS53-207ENST00000570510 ZBTB12Q9Y330 459 aaPredicted RBP14.72□□□□□ -0.05
VPS53-207ENST00000570510 RIC1Q4ADV7 1423 aa14.72□□□□□ -0.05
VPS53-207ENST00000570510 IBTKQ9P2D0 1353 aaPredicted RBP14.72□□□□□ -0.05
VPS53-207ENST00000570510 UBN2Q6ZU65 1347 aa14.71□□□□□ -0.05
VPS53-207ENST00000570510 SHTN1A0MZ66 631 aa14.71□□□□□ -0.05
VPS53-207ENST00000570510 ADM5C9JUS6 153 aa14.71□□□□□ -0.05
VPS53-207ENST00000570510 SLC10A3P09131 477 aa14.71□□□□□ -0.05
VPS53-207ENST00000570510 TTLL7Q6ZT98 887 aa14.71□□□□□ -0.05
VPS53-207ENST00000570510 C3orf67Q6ZVT6 689 aa14.71□□□□□ -0.05
VPS53-207ENST00000570510 CCER1Q8TC90 406 aaPredicted RBP14.71□□□□□ -0.05
VPS53-207ENST00000570510 DPF2Q92785 391 aa14.71□□□□□ -0.05
VPS53-207ENST00000570510 UTP14AQ9BVJ6 771 aaKnown RBP14.71□□□□□ -0.05
VPS53-207ENST00000570510 MIS18AQ9NYP9 233 aa14.71□□□□□ -0.05
VPS53-207ENST00000570510 ABCC4O15439 1325 aa14.7□□□□□ -0.06
VPS53-207ENST00000570510 NTSR2O95665 410 aa14.7□□□□□ -0.06
VPS53-207ENST00000570510 DCTN1Q14203 1278 aa14.7□□□□□ -0.06
VPS53-207ENST00000570510 NEFMP07197 916 aa14.69□□□□□ -0.06
VPS53-207ENST00000570510 WASHC4Q2M389 1173 aa14.69□□□□□ -0.06
VPS53-207ENST00000570510 HABP4Q5JVS0 413 aaKnown RBP14.69□□□□□ -0.06
VPS53-207ENST00000570510 GIGYF2Q6Y7W6 1299 aaKnown RBP14.69□□□□□ -0.06
VPS53-207ENST00000570510 ZNF34Q8IZ26 560 aa14.69□□□□□ -0.06
VPS53-207ENST00000570510 G3V3G9 751 aa14.68□□□□□ -0.06
VPS53-207ENST00000570510 PSMD14O00487 310 aa14.68□□□□□ -0.06
VPS53-207ENST00000570510 HTATSF1O43719 755 aaKnown RBP14.68□□□□□ -0.06
VPS53-207ENST00000570510 U2AF1L5P0DN76 240 aaPredicted RBP14.68□□□□□ -0.06
VPS53-207ENST00000570510 RPS12P25398 132 aaKnown RBP14.68□□□□□ -0.06
VPS53-207ENST00000570510 U2AF1Q01081 240 aaKnown RBP eCLIP14.68□□□□□ -0.06
VPS53-207ENST00000570510 DCAF8Q5TAQ9 597 aa14.68□□□□□ -0.06
VPS53-207ENST00000570510 PNISRQ8TF01 805 aaKnown RBP14.68□□□□□ -0.06
VPS53-207ENST00000570510 RSPH6AQ9H0K4 717 aa14.68□□□□□ -0.06
VPS53-207ENST00000570510 YDJCA8MPS7 323 aa14.67□□□□□ -0.06
VPS53-207ENST00000570510 TBC1D8O95759 1140 aa14.67□□□□□ -0.06
VPS53-207ENST00000570510 ZNF296Q8WUU4 475 aaPredicted RBP14.67□□□□□ -0.06
VPS53-207ENST00000570510 DBNDD1Q9H9R9 158 aa14.67□□□□□ -0.06
VPS53-207ENST00000570510 AKAP11Q9UKA4 1901 aa14.66□□□□□ -0.06
VPS53-207ENST00000570510 C6orf229H3BNL8 230 aa14.66□□□□□ -0.06
VPS53-207ENST00000570510 RIMBP2O15034 1052 aa14.66□□□□□ -0.06
VPS53-207ENST00000570510 KIF4BQ2VIQ3 1234 aa14.66□□□□□ -0.06
VPS53-207ENST00000570510 SLC10A5Q5PT55 438 aa14.66□□□□□ -0.06
VPS53-207ENST00000570510 FBXO46Q6PJ61 603 aaPredicted RBP14.66□□□□□ -0.06
VPS53-207ENST00000570510 TMC4Q7Z404 712 aa14.66□□□□□ -0.06
VPS53-207ENST00000570510 GGA3Q9NZ52 723 aa14.66□□□□□ -0.06
VPS53-207ENST00000570510 NSFL1CQ9UNZ2 370 aaKnown RBP14.66□□□□□ -0.06
VPS53-207ENST00000570510 EGFRP00533 1210 aa14.65□□□□□ -0.06
VPS53-207ENST00000570510 HCLS1P14317 486 aaPredicted RBP14.65□□□□□ -0.06
VPS53-207ENST00000570510 GRAPQ13588 217 aa14.65□□□□□ -0.06
VPS53-207ENST00000570510 RASAL3Q86YV0 1011 aa14.65□□□□□ -0.06
VPS53-207ENST00000570510 GRAPLQ8TC17 118 aaPredicted RBP14.65□□□□□ -0.06
VPS53-207ENST00000570510 CDCA5Q96FF9 252 aa14.65□□□□□ -0.06
VPS53-207ENST00000570510 FKBP1BP68106 108 aa14.64□□□□□ -0.07
VPS53-207ENST00000570510 TTLL12Q14166 644 aaPredicted RBP14.64□□□□□ -0.07
VPS53-207ENST00000570510 EYA3Q99504 573 aa14.64□□□□□ -0.07
VPS53-207ENST00000570510 TRMT112Q9UI30 125 aaKnown RBP14.64□□□□□ -0.07
VPS53-207ENST00000570510 NUP98P52948 1817 aa14.64□□□□□ -0.07
VPS53-207ENST00000570510 COL3A1P02461 1466 aaPredicted RBP14.63□□□□□ -0.07
VPS53-207ENST00000570510 PER1O15534 1290 aaPredicted RBP14.63□□□□□ -0.07
VPS53-207ENST00000570510 DOK7Q18PE1 504 aa14.63□□□□□ -0.07
VPS53-207ENST00000570510 GPR25O00155 361 aa14.62□□□□□ -0.07
VPS53-207ENST00000570510 ECE2O60344 883 aa14.62□□□□□ -0.07
VPS53-207ENST00000570510 HSP90AB3PQ58FF7 597 aa14.62□□□□□ -0.07
VPS53-207ENST00000570510 FKTNO75072 461 aa14.61□□□□□ -0.07
VPS53-207ENST00000570510 EIF4A1P60842 406 aaKnown RBP14.61□□□□□ -0.07
VPS53-207ENST00000570510 ANGEL2Q5VTE6 544 aaKnown RBP14.61□□□□□ -0.07
VPS53-207ENST00000570510 SH3TC1Q8TE82 1336 aa14.61□□□□□ -0.07
VPS53-207ENST00000570510 EIF2S2P20042 333 aaKnown RBP14.6□□□□□ -0.07
VPS53-207ENST00000570510 SREBF2Q12772 1141 aa14.6□□□□□ -0.07
VPS53-207ENST00000570510 SCARF1Q14162 830 aa14.6□□□□□ -0.07
VPS53-207ENST00000570510 THUMPD2Q9BTF0 503 aaKnown RBP14.6□□□□□ -0.07
VPS53-207ENST00000570510 ZC3H12CQ9C0D7 883 aaKnown RBP14.6□□□□□ -0.07
VPS53-207ENST00000570510 ERBB4Q15303 1308 aa14.6□□□□□ -0.07
VPS53-207ENST00000570510 UBE2Q2LH0YL09 131 aa14.59□□□□□ -0.07
VPS53-207ENST00000570510 NF2P35240 595 aa14.59□□□□□ -0.07
VPS53-207ENST00000570510 AIMP1Q12904 312 aaKnown RBP14.59□□□□□ -0.07
VPS53-207ENST00000570510 MKRN3Q13064 507 aaKnown RBP14.59□□□□□ -0.07
VPS53-207ENST00000570510 TCIRG1Q13488 830 aa14.59□□□□□ -0.07
VPS53-207ENST00000570510 INTS3Q68E01 1043 aaKnown RBP14.59□□□□□ -0.07
VPS53-207ENST00000570510 KCNQ5Q9NR82 932 aa14.59□□□□□ -0.07
VPS53-207ENST00000570510 NLRP10Q86W26 655 aa14.58□□□□□ -0.08
VPS53-207ENST00000570510 ASTN2O75129 1339 aaPredicted RBP14.58□□□□□ -0.08
VPS53-207ENST00000570510 LAMB4A4D0S4 1761 aa14.57□□□□□ -0.08
VPS53-207ENST00000570510 VIL1P09327 827 aaKnown RBP14.57□□□□□ -0.08
VPS53-207ENST00000570510 TM4SF4P48230 202 aa14.57□□□□□ -0.08
VPS53-207ENST00000570510 NOM1Q5C9Z4 860 aaKnown RBP14.57□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms