RNA–Protein interactions for RNA: ENST00000570359.1

VPS53-206, Transcript of VPS53, GARP complex subunit, humanhuman

Gene VPS53, Length 2,781 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-206ENST00000570359 KCPQ6ZWJ8 1503 aa11.92□□□□□ -0.5
VPS53-206ENST00000570359 STARD3NLO95772 234 aa11.91□□□□□ -0.5
VPS53-206ENST00000570359 ADORA1P30542 326 aa11.91□□□□□ -0.5
VPS53-206ENST00000570359 RABL6Q3YEC7 729 aaPredicted RBP11.91□□□□□ -0.5
VPS53-206ENST00000570359 SLC4A9Q96Q91 983 aa11.91□□□□□ -0.5
VPS53-206ENST00000570359 CYP46A1Q9Y6A2 500 aa11.91□□□□□ -0.5
VPS53-206ENST00000570359 ABCA3Q99758 1704 aa11.91□□□□□ -0.5
VPS53-206ENST00000570359 SLC27A2O14975 620 aa11.91□□□□□ -0.5
VPS53-206ENST00000570359 MCM2P49736 904 aa11.91□□□□□ -0.5
VPS53-206ENST00000570359 NKX1-1Q15270 411 aaPredicted RBP11.91□□□□□ -0.5
VPS53-206ENST00000570359 PI16Q6UXB8 463 aa11.91□□□□□ -0.5
VPS53-206ENST00000570359 SMIM5Q71RC9 77 aa11.91□□□□□ -0.5
VPS53-206ENST00000570359 ATG9AQ7Z3C6 839 aa11.91□□□□□ -0.5
VPS53-206ENST00000570359 A0A1B0GUL7 405 aa11.9□□□□□ -0.5
VPS53-206ENST00000570359 VPS37CA5D8V6 355 aaPredicted RBP11.9□□□□□ -0.5
VPS53-206ENST00000570359 CYP2E1P05181 493 aaPredicted RBP11.9□□□□□ -0.5
VPS53-206ENST00000570359 CCDC191Q8NCU4 936 aa11.9□□□□□ -0.5
VPS53-206ENST00000570359 SMC3Q9UQE7 1217 aa11.9□□□□□ -0.5
VPS53-206ENST00000570359 GLI3P10071 1580 aa11.9□□□□□ -0.5
VPS53-206ENST00000570359 GRPEL1Q9HAV7 217 aa11.9□□□□□ -0.5
VPS53-206ENST00000570359 LMBRD1Q9NUN5 540 aa11.9□□□□□ -0.5
VPS53-206ENST00000570359 LIMCH1Q9UPQ0 1083 aa11.9□□□□□ -0.5
VPS53-206ENST00000570359 A0A0G2JLW4 131 aa11.9□□□□□ -0.51
VPS53-206ENST00000570359 TCIRG1Q13488 830 aa11.9□□□□□ -0.51
VPS53-206ENST00000570359 VPS53Q5VIR6 699 aa11.9□□□□□ -0.51
VPS53-206ENST00000570359 HELBQ8NG08 1087 aaPredicted RBP11.9□□□□□ -0.51
VPS53-206ENST00000570359 TOGARAM1Q9Y4F4 1720 aa11.89□□□□□ -0.51
VPS53-206ENST00000570359 IFIT1P09914 478 aaKnown RBP11.89□□□□□ -0.51
VPS53-206ENST00000570359 FGD1P98174 961 aa11.89□□□□□ -0.51
VPS53-206ENST00000570359 GPT2Q8TD30 523 aa11.89□□□□□ -0.51
VPS53-206ENST00000570359 TTC14Q96N46 770 aa11.89□□□□□ -0.51
VPS53-206ENST00000570359 ZBTB4Q9P1Z0 1013 aaPredicted RBP11.89□□□□□ -0.51
VPS53-206ENST00000570359 TRMT112Q9UI30 125 aaKnown RBP11.89□□□□□ -0.51
VPS53-206ENST00000570359 EYA2O00167 538 aa11.89□□□□□ -0.51
VPS53-206ENST00000570359 HSP90B1P14625 803 aaKnown RBP11.89□□□□□ -0.51
VPS53-206ENST00000570359 ATP5JP18859 108 aa11.89□□□□□ -0.51
VPS53-206ENST00000570359 CHST3Q7LGC8 479 aa11.89□□□□□ -0.51
VPS53-206ENST00000570359 FERMT3Q86UX7 667 aa11.89□□□□□ -0.51
VPS53-206ENST00000570359 CEP126Q9P2H0 1117 aa11.89□□□□□ -0.51
VPS53-206ENST00000570359 FIBPO43427 364 aa11.88□□□□□ -0.51
VPS53-206ENST00000570359 GJB2P29033 226 aa11.88□□□□□ -0.51
VPS53-206ENST00000570359 CUL4AQ13619 759 aa11.88□□□□□ -0.51
VPS53-206ENST00000570359 NECTIN1Q15223 517 aa11.88□□□□□ -0.51
VPS53-206ENST00000570359 WASHC4Q2M389 1173 aa11.88□□□□□ -0.51
VPS53-206ENST00000570359 SKOR2Q2VWA4 1001 aaPredicted RBP11.88□□□□□ -0.51
VPS53-206ENST00000570359 FAM182BQ5T319 152 aa11.88□□□□□ -0.51
VPS53-206ENST00000570359 BLOC1S2Q6QNY1 142 aa11.88□□□□□ -0.51
VPS53-206ENST00000570359 GREM2Q9H772 168 aa11.88□□□□□ -0.51
VPS53-206ENST00000570359 PAG1Q9NWQ8 432 aa11.88□□□□□ -0.51
VPS53-206ENST00000570359 LAMB4A4D0S4 1761 aa11.88□□□□□ -0.51
VPS53-206ENST00000570359 SHANK3Q9BYB0 1731 aa11.88□□□□□ -0.51
VPS53-206ENST00000570359 COL15A1P39059 1388 aa11.88□□□□□ -0.51
VPS53-206ENST00000570359 SNAP23O00161 211 aa11.88□□□□□ -0.51
VPS53-206ENST00000570359 HIP1O00291 1037 aa11.88□□□□□ -0.51
VPS53-206ENST00000570359 HCLS1P14317 486 aaPredicted RBP11.88□□□□□ -0.51
VPS53-206ENST00000570359 DDB1Q16531 1140 aa11.88□□□□□ -0.51
VPS53-206ENST00000570359 ME3Q16798 604 aa11.88□□□□□ -0.51
VPS53-206ENST00000570359 TTC39AQ5SRH9 613 aa11.88□□□□□ -0.51
VPS53-206ENST00000570359 DZIP3Q86Y13 1208 aaKnown RBP11.88□□□□□ -0.51
VPS53-206ENST00000570359 CNNM1Q9NRU3 951 aa11.88□□□□□ -0.51
VPS53-206ENST00000570359 ZNF609O15014 1411 aa11.88□□□□□ -0.51
VPS53-206ENST00000570359 GADD45BO75293 160 aaPredicted RBP11.87□□□□□ -0.51
VPS53-206ENST00000570359 IFIT5Q13325 482 aaKnown RBP11.87□□□□□ -0.51
VPS53-206ENST00000570359 METTL24Q5JXM2 366 aa11.87□□□□□ -0.51
VPS53-206ENST00000570359 MAP4K1Q92918 833 aa11.87□□□□□ -0.51
VPS53-206ENST00000570359 TPCN1Q9ULQ1 816 aa11.87□□□□□ -0.51
VPS53-206ENST00000570359 CNPY2Q9Y2B0 182 aa11.87□□□□□ -0.51
VPS53-206ENST00000570359 ERBB4Q15303 1308 aa11.87□□□□□ -0.51
VPS53-206ENST00000570359 ROBO1Q9Y6N7 1651 aa11.87□□□□□ -0.51
VPS53-206ENST00000570359 FSD2A1L4K1 749 aa11.87□□□□□ -0.51
VPS53-206ENST00000570359 BRD1O95696 1058 aa11.87□□□□□ -0.51
VPS53-206ENST00000570359 IL15P40933 162 aaPredicted RBP11.87□□□□□ -0.51
VPS53-206ENST00000570359 SCARF1Q14162 830 aa11.87□□□□□ -0.51
VPS53-206ENST00000570359 SYCE3A1L190 88 aa11.86□□□□□ -0.51
VPS53-206ENST00000570359 KCNQ2O43526 872 aa11.86□□□□□ -0.51
VPS53-206ENST00000570359 TAF5LO75529 589 aa11.86□□□□□ -0.51
VPS53-206ENST00000570359 CYP19A1P11511 503 aaPredicted RBP11.86□□□□□ -0.51
VPS53-206ENST00000570359 ITGA6P23229 1130 aa11.86□□□□□ -0.51
VPS53-206ENST00000570359 ATP6V1AP38606 617 aa11.86□□□□□ -0.51
VPS53-206ENST00000570359 HAND2P61296 217 aa11.86□□□□□ -0.51
VPS53-206ENST00000570359 KLHL40Q2TBA0 621 aa11.86□□□□□ -0.51
VPS53-206ENST00000570359 RNF20Q5VTR2 975 aa11.86□□□□□ -0.51
VPS53-206ENST00000570359 FAM173BQ6P4H8 233 aa11.86□□□□□ -0.51
VPS53-206ENST00000570359 LDHAL6AQ6ZMR3 332 aa11.86□□□□□ -0.51
VPS53-206ENST00000570359 HAUS7Q99871 368 aa11.86□□□□□ -0.51
VPS53-206ENST00000570359 ABCC6O95255 1503 aa11.86□□□□□ -0.51
VPS53-206ENST00000570359 MAP3K15Q6ZN16 1313 aa11.86□□□□□ -0.51
VPS53-206ENST00000570359 SYT1P21579 422 aa11.86□□□□□ -0.51
VPS53-206ENST00000570359 ZSCAN23Q3MJ62 389 aa11.86□□□□□ -0.51
VPS53-206ENST00000570359 RNF214Q8ND24 703 aa11.86□□□□□ -0.51
VPS53-206ENST00000570359 ISCA1Q9BUE6 129 aa11.86□□□□□ -0.51
VPS53-206ENST00000570359 IRS4O14654 1257 aaPredicted RBP11.85□□□□□ -0.51
VPS53-206ENST00000570359 DDX11Q96FC9 970 aa11.85□□□□□ -0.51
VPS53-206ENST00000570359 ZSWIM6Q9HCJ5 1215 aa11.85□□□□□ -0.51
VPS53-206ENST00000570359 TCHHQ07283 1943 aa11.85□□□□□ -0.51
VPS53-206ENST00000570359 RPAP1Q9BWH6 1393 aaPredicted RBP11.85□□□□□ -0.51
VPS53-206ENST00000570359 MRE11P49959 708 aa11.85□□□□□ -0.51
VPS53-206ENST00000570359 FAM98CQ17RN3 349 aaKnown RBP11.85□□□□□ -0.51
VPS53-206ENST00000570359 TTLL5Q6EMB2 1281 aa11.85□□□□□ -0.51
VPS53-206ENST00000570359 GIGYF2Q6Y7W6 1299 aaKnown RBP11.85□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms