RNA–Protein interactions for RNA: ENST00000570296.1

CLK3-227, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 916 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-227ENST00000570296 NLRP3Q96P20 1036 aa24.24■■□□□ 1.47
CLK3-227ENST00000570296 ADM5C9JUS6 153 aa24.23■■□□□ 1.47
CLK3-227ENST00000570296 U2SURPO15042 1029 aaKnown RBP24.23■■□□□ 1.47
CLK3-227ENST00000570296 NTSR2O95665 410 aa24.23■■□□□ 1.47
CLK3-227ENST00000570296 FBXO46Q6PJ61 603 aaPredicted RBP24.23■■□□□ 1.47
CLK3-227ENST00000570296 ZNF296Q8WUU4 475 aaPredicted RBP24.23■■□□□ 1.47
CLK3-227ENST00000570296 ABCC4O15439 1325 aa24.23■■□□□ 1.47
CLK3-227ENST00000570296 YDJCA8MPS7 323 aa24.22■■□□□ 1.47
CLK3-227ENST00000570296 GPTP24298 496 aa24.22■■□□□ 1.47
CLK3-227ENST00000570296 FXR1P51114 621 aaKnown RBP eCLIP24.22■■□□□ 1.47
CLK3-227ENST00000570296 KIF6Q6ZMV9 814 aa24.22■■□□□ 1.47
CLK3-227ENST00000570296 SP8Q8IXZ3 490 aa24.22■■□□□ 1.47
CLK3-227ENST00000570296 BBOX1O75936 387 aa24.21■■□□□ 1.47
CLK3-227ENST00000570296 TBC1D10BQ4KMP7 808 aaPredicted RBP24.21■■□□□ 1.47
CLK3-227ENST00000570296 NOM1Q5C9Z4 860 aaKnown RBP24.21■■□□□ 1.47
CLK3-227ENST00000570296 RASAL3Q86YV0 1011 aa24.21■■□□□ 1.47
CLK3-227ENST00000570296 TIMELESSQ9UNS1 1208 aa24.21■■□□□ 1.47
CLK3-227ENST00000570296 EIF4G2P78344 907 aaKnown RBP eCLIP24.2■■□□□ 1.46
CLK3-227ENST00000570296 ZNF34Q8IZ26 560 aa24.2■■□□□ 1.46
CLK3-227ENST00000570296 ZBTB12Q9Y330 459 aaPredicted RBP24.2■■□□□ 1.46
CLK3-227ENST00000570296 PPP1R42Q7Z4L9 355 aa24.19■■□□□ 1.46
CLK3-227ENST00000570296 PHACTR3Q96KR7 559 aa24.19■■□□□ 1.46
CLK3-227ENST00000570296 ANKRD36CQ5JPF3 1778 aa24.19■■□□□ 1.46
CLK3-227ENST00000570296 EGFRP00533 1210 aa24.18■■□□□ 1.46
CLK3-227ENST00000570296 RPS12P25398 132 aaKnown RBP24.18■■□□□ 1.46
CLK3-227ENST00000570296 SULF1Q8IWU6 871 aa24.18■■□□□ 1.46
CLK3-227ENST00000570296 NGEFQ8N5V2 710 aa24.18■■□□□ 1.46
CLK3-227ENST00000570296 DUOX1Q9NRD9 1551 aa24.17■■□□□ 1.46
CLK3-227ENST00000570296 PSMD14O00487 310 aa24.17■■□□□ 1.46
CLK3-227ENST00000570296 PARP10Q53GL7 1025 aa24.17■■□□□ 1.46
CLK3-227ENST00000570296 SLC10A5Q5PT55 438 aa24.17■■□□□ 1.46
CLK3-227ENST00000570296 TTLL7Q6ZT98 887 aa24.17■■□□□ 1.46
CLK3-227ENST00000570296 RTF1Q92541 710 aaKnown RBP24.17■■□□□ 1.46
CLK3-227ENST00000570296 LAMB2P55268 1798 aa24.16■■□□□ 1.46
CLK3-227ENST00000570296 PAPPA2Q9BXP8 1791 aa24.16■■□□□ 1.46
CLK3-227ENST00000570296 TBC1D8O95759 1140 aa24.16■■□□□ 1.46
CLK3-227ENST00000570296 HSPA5P11021 654 aaKnown RBP24.16■■□□□ 1.46
CLK3-227ENST00000570296 FKBP1BP68106 108 aa24.16■■□□□ 1.46
CLK3-227ENST00000570296 KIAA0100Q14667 2235 aaKnown RBP24.15■■□□□ 1.46
CLK3-227ENST00000570296 MCM10Q7L590 875 aa24.15■■□□□ 1.46
CLK3-227ENST00000570296 CDCA5Q96FF9 252 aa24.15■■□□□ 1.46
CLK3-227ENST00000570296 ZBTB3Q9H5J0 574 aa24.15■■□□□ 1.46
CLK3-227ENST00000570296 HTTP42858 3142 aa24.15■■□□□ 1.46
CLK3-227ENST00000570296 RBBP6Q7Z6E9 1792 aaKnown RBP24.14■■□□□ 1.46
CLK3-227ENST00000570296 LRRC37AA6NMS7 1700 aa24.14■■□□□ 1.45
CLK3-227ENST00000570296 GPR25O00155 361 aa24.14■■□□□ 1.45
CLK3-227ENST00000570296 PRKAR2BP31323 418 aa24.14■■□□□ 1.45
CLK3-227ENST00000570296 GIGYF2Q6Y7W6 1299 aaKnown RBP24.14■■□□□ 1.45
CLK3-227ENST00000570296 DDX60Q8IY21 1712 aaKnown RBP24.14■■□□□ 1.45
CLK3-227ENST00000570296 CEP290O15078 2479 aa24.13■■□□□ 1.45
CLK3-227ENST00000570296 RBM26Q5T8P6 1007 aaKnown RBP24.13■■□□□ 1.45
CLK3-227ENST00000570296 GGA3Q9NZ52 723 aa24.13■■□□□ 1.45
CLK3-227ENST00000570296 KIF4BQ2VIQ3 1234 aa24.12■■□□□ 1.45
CLK3-227ENST00000570296 TMC4Q7Z404 712 aa24.12■■□□□ 1.45
CLK3-227ENST00000570296 RSPH6AQ9H0K4 717 aa24.12■■□□□ 1.45
CLK3-227ENST00000570296 TRIOBPQ9H2D6 2365 aa24.11■■□□□ 1.45
CLK3-227ENST00000570296 INTS3Q68E01 1043 aaKnown RBP24.11■■□□□ 1.45
CLK3-227ENST00000570296 UTP14AQ9BVJ6 771 aaKnown RBP24.11■■□□□ 1.45
CLK3-227ENST00000570296 RRP7AQ9Y3A4 280 aaKnown RBP24.11■■□□□ 1.45
CLK3-227ENST00000570296 GRAPQ13588 217 aa24.1■■□□□ 1.45
CLK3-227ENST00000570296 GRAPLQ8TC17 118 aaPredicted RBP24.1■■□□□ 1.45
CLK3-227ENST00000570296 HTATSF1O43719 755 aaKnown RBP24.09■■□□□ 1.45
CLK3-227ENST00000570296 FKTNO75072 461 aa24.09■■□□□ 1.45
CLK3-227ENST00000570296 TM4SF4P48230 202 aa24.09■■□□□ 1.45
CLK3-227ENST00000570296 TAF7Q15545 349 aaPredicted RBP24.09■■□□□ 1.45
CLK3-227ENST00000570296 WASHC4Q2M389 1173 aa24.09■■□□□ 1.45
CLK3-227ENST00000570296 DDX46Q7L014 1031 aaKnown RBP24.09■■□□□ 1.45
CLK3-227ENST00000570296 CFHR5Q9BXR6 569 aa24.09■■□□□ 1.45
CLK3-227ENST00000570296 SZT2Q5T011 3432 aa24.09■■□□□ 1.45
CLK3-227ENST00000570296 CENPFP49454 3210 aa24.08■■□□□ 1.45
CLK3-227ENST00000570296 DBNDD1Q9H9R9 158 aa24.08■■□□□ 1.45
CLK3-227ENST00000570296 TAF1P21675 1872 aa24.08■■□□□ 1.45
CLK3-227ENST00000570296 KDM3BQ7LBC6 1761 aa24.08■■□□□ 1.44
CLK3-227ENST00000570296 MYL6BP14649 208 aa24.07■■□□□ 1.44
CLK3-227ENST00000570296 CC2D1BQ5T0F9 858 aaKnown RBP24.07■■□□□ 1.44
CLK3-227ENST00000570296 CUL9Q8IWT3 2517 aa24.07■■□□□ 1.44
CLK3-227ENST00000570296 RTL9Q8NET4 1388 aa24.06■■□□□ 1.44
CLK3-227ENST00000570296 ASTN2O75129 1339 aaPredicted RBP24.06■■□□□ 1.44
CLK3-227ENST00000570296 POTEFA5A3E0 1075 aa24.05■■□□□ 1.44
CLK3-227ENST00000570296 DCTN1Q14203 1278 aa24.05■■□□□ 1.44
CLK3-227ENST00000570296 BRCA2P51587 3418 aa24.04■■□□□ 1.44
CLK3-227ENST00000570296 ECE2O60344 883 aa24.04■■□□□ 1.44
CLK3-227ENST00000570296 ERBB4Q15303 1308 aa24.04■■□□□ 1.44
CLK3-227ENST00000570296 PER1O15534 1290 aaPredicted RBP24.03■■□□□ 1.44
CLK3-227ENST00000570296 SREBF2Q12772 1141 aa24.03■■□□□ 1.44
CLK3-227ENST00000570296 ANGEL2Q5VTE6 544 aaKnown RBP24.03■■□□□ 1.44
CLK3-227ENST00000570296 PNISRQ8TF01 805 aaKnown RBP24.03■■□□□ 1.44
CLK3-227ENST00000570296 MIS18AQ9NYP9 233 aa24.03■■□□□ 1.44
CLK3-227ENST00000570296 SCN9AQ15858 1988 aa24.03■■□□□ 1.44
CLK3-227ENST00000570296 ZNF609O15014 1411 aa24.02■■□□□ 1.44
CLK3-227ENST00000570296 VIL1P09327 827 aaKnown RBP24.02■■□□□ 1.44
CLK3-227ENST00000570296 KCNQ5Q9NR82 932 aa24.02■■□□□ 1.44
CLK3-227ENST00000570296 PITPNM2Q9BZ72 1349 aa24.02■■□□□ 1.44
CLK3-227ENST00000570296 HCLS1P14317 486 aaPredicted RBP24.01■■□□□ 1.43
CLK3-227ENST00000570296 COLQQ9Y215 455 aaPredicted RBP24.01■■□□□ 1.43
CLK3-227ENST00000570296 UBE2Q2LH0YL09 131 aa24■■□□□ 1.43
CLK3-227ENST00000570296 RIMBP2O15034 1052 aa24■■□□□ 1.43
CLK3-227ENST00000570296 ZNF280AP59817 542 aaPredicted RBP24■■□□□ 1.43
CLK3-227ENST00000570296 SCARF1Q14162 830 aa24■■□□□ 1.43
CLK3-227ENST00000570296 EYA3Q99504 573 aa24■■□□□ 1.43
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms