RNA–Protein interactions for RNA: ENST00000569422.1

LINC00558-201, long intergenic non-protein coding RNA 558, humanhuman

TSL 1 (best) BASIC

Gene LINC00558, Length 3,163 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00558-201ENST00000569422 TIMM10P62072 90 aa10.47□□□□□ -0.73
LINC00558-201ENST00000569422 PTPN12Q05209 780 aaKnown RBP10.47□□□□□ -0.73
LINC00558-201ENST00000569422 CCDC173Q0VFZ6 552 aa10.47□□□□□ -0.73
LINC00558-201ENST00000569422 ZSCAN22P10073 491 aaPredicted RBP10.47□□□□□ -0.73
LINC00558-201ENST00000569422 LRRC2Q9BYS8 371 aa10.47□□□□□ -0.73
LINC00558-201ENST00000569422 SLC27A2O14975 620 aa10.47□□□□□ -0.73
LINC00558-201ENST00000569422 MBD3O95983 291 aa10.47□□□□□ -0.73
LINC00558-201ENST00000569422 FOSBP53539 338 aa10.47□□□□□ -0.73
LINC00558-201ENST00000569422 EVA1CP58658 441 aa10.47□□□□□ -0.73
LINC00558-201ENST00000569422 DNM1Q05193 864 aaKnown RBP10.47□□□□□ -0.73
LINC00558-201ENST00000569422 NECTIN1Q15223 517 aa10.47□□□□□ -0.73
LINC00558-201ENST00000569422 TNNI3KQ59H18 835 aa10.47□□□□□ -0.73
LINC00558-201ENST00000569422 CC2D2BQ6DHV5 1058 aa10.47□□□□□ -0.73
LINC00558-201ENST00000569422 LRSAM1Q6UWE0 723 aa10.47□□□□□ -0.73
LINC00558-201ENST00000569422 TPCN1Q9ULQ1 816 aa10.47□□□□□ -0.73
LINC00558-201ENST00000569422 FPGT-TNNI3KV9GXZ4 949 aa10.47□□□□□ -0.73
LINC00558-201ENST00000569422 USP42Q9H9J4 1324 aaKnown RBP10.46□□□□□ -0.73
LINC00558-201ENST00000569422 NBPF26B4DH59 902 aa10.46□□□□□ -0.73
LINC00558-201ENST00000569422 NBPF14Q5TI25 921 aa10.46□□□□□ -0.73
LINC00558-201ENST00000569422 NBPF10Q6P3W6 841 aaKnown RBP10.46□□□□□ -0.73
LINC00558-201ENST00000569422 NBPF15Q8N660 670 aa10.46□□□□□ -0.73
LINC00558-201ENST00000569422 ZCRB1Q8TBF4 217 aaKnown RBP10.46□□□□□ -0.73
LINC00558-201ENST00000569422 CLCN1P35523 988 aa10.46□□□□□ -0.74
LINC00558-201ENST00000569422 BLOC1S2Q6QNY1 142 aa10.46□□□□□ -0.74
LINC00558-201ENST00000569422 RPAP1Q9BWH6 1393 aaPredicted RBP10.46□□□□□ -0.74
LINC00558-201ENST00000569422 SLIT3O75094 1523 aa10.46□□□□□ -0.74
LINC00558-201ENST00000569422 ZSWIM6Q9HCJ5 1215 aa10.45□□□□□ -0.74
LINC00558-201ENST00000569422 UTYO14607 1347 aa10.45□□□□□ -0.74
LINC00558-201ENST00000569422 MST1RQ04912 1400 aa10.45□□□□□ -0.74
LINC00558-201ENST00000569422 VPS53Q5VIR6 699 aa10.45□□□□□ -0.74
LINC00558-201ENST00000569422 MAP4K1Q92918 833 aa10.45□□□□□ -0.74
LINC00558-201ENST00000569422 SPATA31A3Q5VYP0 1347 aa10.45□□□□□ -0.74
LINC00558-201ENST00000569422 GOLIM4O00461 696 aa10.45□□□□□ -0.74
LINC00558-201ENST00000569422 F13A1P00488 732 aa10.45□□□□□ -0.74
LINC00558-201ENST00000569422 MSNP26038 577 aaKnown RBP10.45□□□□□ -0.74
LINC00558-201ENST00000569422 LARP1BQ659C4 914 aaKnown RBP10.45□□□□□ -0.74
LINC00558-201ENST00000569422 BRINP3Q76B58 766 aa10.45□□□□□ -0.74
LINC00558-201ENST00000569422 LRP10Q7Z4F1 713 aa10.45□□□□□ -0.74
LINC00558-201ENST00000569422 HIP1O00291 1037 aa10.44□□□□□ -0.74
LINC00558-201ENST00000569422 LRRC24Q50LG9 513 aa10.44□□□□□ -0.74
LINC00558-201ENST00000569422 RNF20Q5VTR2 975 aa10.44□□□□□ -0.74
LINC00558-201ENST00000569422 PLBD2Q8NHP8 589 aa10.44□□□□□ -0.74
LINC00558-201ENST00000569422 KDM3BQ7LBC6 1761 aa10.44□□□□□ -0.74
LINC00558-201ENST00000569422 RFX5P48382 616 aaPredicted RBP10.44□□□□□ -0.74
LINC00558-201ENST00000569422 TSPY26PQ9H489 355 aa10.44□□□□□ -0.74
LINC00558-201ENST00000569422 SNRKQ9NRH2 765 aa10.44□□□□□ -0.74
LINC00558-201ENST00000569422 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP10.44□□□□□ -0.74
LINC00558-201ENST00000569422 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP10.43□□□□□ -0.74
LINC00558-201ENST00000569422 PTMAP06454 111 aaKnown RBP10.43□□□□□ -0.74
LINC00558-201ENST00000569422 PSMA5P28066 241 aa10.43□□□□□ -0.74
LINC00558-201ENST00000569422 ST3GAL1Q11201 340 aa10.43□□□□□ -0.74
LINC00558-201ENST00000569422 ZNF526Q8TF50 670 aaPredicted RBP10.43□□□□□ -0.74
LINC00558-201ENST00000569422 SYAP1Q96A49 352 aaPredicted RBP10.43□□□□□ -0.74
LINC00558-201ENST00000569422 DDX11Q96FC9 970 aa10.43□□□□□ -0.74
LINC00558-201ENST00000569422 COPRSQ9NQ92 184 aa10.43□□□□□ -0.74
LINC00558-201ENST00000569422 EPB41L2O43491 1005 aaKnown RBP10.43□□□□□ -0.74
LINC00558-201ENST00000569422 SYTL4Q96C24 671 aaPredicted RBP10.43□□□□□ -0.74
LINC00558-201ENST00000569422 PUS3Q9BZE2 481 aaKnown RBP10.43□□□□□ -0.74
LINC00558-201ENST00000569422 TFIP11Q9UBB9 837 aaKnown RBP10.43□□□□□ -0.74
LINC00558-201ENST00000569422 LMO7Q8WWI1 1683 aa10.43□□□□□ -0.74
LINC00558-201ENST00000569422 TAF5LO75529 589 aa10.42□□□□□ -0.74
LINC00558-201ENST00000569422 FKBP4Q02790 459 aaKnown RBP eCLIP10.42□□□□□ -0.74
LINC00558-201ENST00000569422 GIMAP6Q6P9H5 292 aa10.42□□□□□ -0.74
LINC00558-201ENST00000569422 CWC25Q9NXE8 425 aaPredicted RBP10.42□□□□□ -0.74
LINC00558-201ENST00000569422 MTMR6Q9Y217 621 aa10.42□□□□□ -0.74
LINC00558-201ENST00000569422 RGPD5Q99666 1765 aa10.42□□□□□ -0.74
LINC00558-201ENST00000569422 CDC37L1Q7L3B6 337 aa10.42□□□□□ -0.74
LINC00558-201ENST00000569422 PPP1R9BQ96SB3 815 aa10.42□□□□□ -0.74
LINC00558-201ENST00000569422 CACNA1FO60840 1977 aa10.42□□□□□ -0.74
LINC00558-201ENST00000569422 HSP90AB3PQ58FF7 597 aa10.42□□□□□ -0.74
LINC00558-201ENST00000569422 GORABQ5T7V8 394 aa10.42□□□□□ -0.74
LINC00558-201ENST00000569422 CHST3Q7LGC8 479 aa10.42□□□□□ -0.74
LINC00558-201ENST00000569422 ZSCAN31Q96LW9 406 aaPredicted RBP10.42□□□□□ -0.74
LINC00558-201ENST00000569422 USP54Q70EL1 1684 aa10.41□□□□□ -0.74
LINC00558-201ENST00000569422 HCLS1P14317 486 aaPredicted RBP10.41□□□□□ -0.74
LINC00558-201ENST00000569422 ATP5JP18859 108 aa10.41□□□□□ -0.74
LINC00558-201ENST00000569422 GPTP24298 496 aa10.41□□□□□ -0.74
LINC00558-201ENST00000569422 IL17RAQ96F46 866 aa10.41□□□□□ -0.74
LINC00558-201ENST00000569422 FAM89AQ96GI7 184 aa10.41□□□□□ -0.74
LINC00558-201ENST00000569422 SH2B1Q9NRF2 756 aaPredicted RBP10.41□□□□□ -0.74
LINC00558-201ENST00000569422 TNS3Q68CZ2 1445 aa10.41□□□□□ -0.74
LINC00558-201ENST00000569422 OVOS2A0A0G2JMS6 1433 aa10.41□□□□□ -0.74
LINC00558-201ENST00000569422 A0A0G2JLW4 131 aa10.41□□□□□ -0.74
LINC00558-201ENST00000569422 JAK2O60674 1132 aa10.41□□□□□ -0.74
LINC00558-201ENST00000569422 RPS6KB1P23443 525 aa10.41□□□□□ -0.74
LINC00558-201ENST00000569422 CEBPZQ03701 1054 aaKnown RBP10.41□□□□□ -0.74
LINC00558-201ENST00000569422 CAMK4Q16566 473 aa10.41□□□□□ -0.74
LINC00558-201ENST00000569422 ZSCAN30Q86W11 494 aa10.41□□□□□ -0.74
LINC00558-201ENST00000569422 SYNE4Q8N205 404 aa10.41□□□□□ -0.74
LINC00558-201ENST00000569422 ATP6V1DQ9Y5K8 247 aa10.41□□□□□ -0.74
LINC00558-201ENST00000569422 IL2RBP14784 551 aa10.4□□□□□ -0.74
LINC00558-201ENST00000569422 FOXO4P98177 505 aa10.4□□□□□ -0.74
LINC00558-201ENST00000569422 TM6SF1Q9BZW5 370 aa10.4□□□□□ -0.74
LINC00558-201ENST00000569422 SLAIN2Q9P270 581 aa10.4□□□□□ -0.74
LINC00558-201ENST00000569422 PCDH11XQ9BZA7 1347 aa10.4□□□□□ -0.74
LINC00558-201ENST00000569422 PCDH11YQ9BZA8 1340 aa10.4□□□□□ -0.74
LINC00558-201ENST00000569422 TOB2Q14106 344 aaPredicted RBP10.4□□□□□ -0.74
LINC00558-201ENST00000569422 Q6ZUG5 572 aa10.4□□□□□ -0.74
LINC00558-201ENST00000569422 BRF1Q92994 677 aa10.4□□□□□ -0.74
LINC00558-201ENST00000569422 NEK1Q96PY6 1258 aa10.4□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms