RNA–Protein interactions for RNA: ENST00000569066.2

UBR1-208, Transcript of ubiquitin protein ligase E3 component n-recognin 1, humanhuman

TSL 1 (best)

Gene UBR1, Length 2,250 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR1-208ENST00000569066 RIPOR1Q6ZS17 1223 aa9.17□□□□□ -0.94
UBR1-208ENST00000569066 PGBD3Q8N328 593 aa9.17□□□□□ -0.94
UBR1-208ENST00000569066 STRN4Q9NRL3 753 aa9.17□□□□□ -0.94
UBR1-208ENST00000569066 ABI2Q9NYB9 513 aaPredicted RBP9.17□□□□□ -0.94
UBR1-208ENST00000569066 PCDHGB7Q9Y5F8 929 aa9.17□□□□□ -0.94
UBR1-208ENST00000569066 NXPE4Q6UWF7 544 aa9.17□□□□□ -0.94
UBR1-208ENST00000569066 SPG7Q9UQ90 795 aa9.17□□□□□ -0.94
UBR1-208ENST00000569066 ZNF76P36508 570 aa9.16□□□□□ -0.94
UBR1-208ENST00000569066 SMCPP49901 116 aaPredicted RBP9.16□□□□□ -0.94
UBR1-208ENST00000569066 ZNF394Q53GI3 561 aa9.16□□□□□ -0.94
UBR1-208ENST00000569066 CUEDC1Q9NWM3 386 aaPredicted RBP9.16□□□□□ -0.94
UBR1-208ENST00000569066 GFRA3O60609 400 aa9.16□□□□□ -0.94
UBR1-208ENST00000569066 EPB42P16452 691 aa9.16□□□□□ -0.94
UBR1-208ENST00000569066 ZNF800Q2TB10 664 aaPredicted RBP eCLIP9.16□□□□□ -0.94
UBR1-208ENST00000569066 RAB44Q7Z6P3 723 aaPredicted RBP9.16□□□□□ -0.94
UBR1-208ENST00000569066 NLRP2Q9NX02 1062 aa9.16□□□□□ -0.94
UBR1-208ENST00000569066 EIF4BP23588 611 aaKnown RBP9.15□□□□□ -0.94
UBR1-208ENST00000569066 TNNI2P48788 182 aa9.15□□□□□ -0.94
UBR1-208ENST00000569066 PTSQ03393 145 aa9.15□□□□□ -0.94
UBR1-208ENST00000569066 UBAP2LQ14157 1087 aaKnown RBP9.15□□□□□ -0.94
UBR1-208ENST00000569066 CTC1Q2NKJ3 1217 aa9.15□□□□□ -0.94
UBR1-208ENST00000569066 RNF34Q969K3 372 aa9.15□□□□□ -0.94
UBR1-208ENST00000569066 C8orf37Q96NL8 207 aa9.15□□□□□ -0.94
UBR1-208ENST00000569066 C12orf49Q9H741 205 aa9.15□□□□□ -0.94
UBR1-208ENST00000569066 ATP13A2Q9NQ11 1180 aa9.15□□□□□ -0.94
UBR1-208ENST00000569066 ZFATQ9P243 1243 aa9.15□□□□□ -0.95
UBR1-208ENST00000569066 NLRP8Q86W28 1048 aa9.14□□□□□ -0.95
UBR1-208ENST00000569066 ACBD3Q9H3P7 528 aa9.14□□□□□ -0.95
UBR1-208ENST00000569066 AAASQ9NRG9 546 aa9.14□□□□□ -0.95
UBR1-208ENST00000569066 KHNYNO15037 678 aaKnown RBP9.14□□□□□ -0.95
UBR1-208ENST00000569066 EFSO43281 561 aa9.14□□□□□ -0.95
UBR1-208ENST00000569066 NEFLP07196 543 aa9.14□□□□□ -0.95
UBR1-208ENST00000569066 EFHC2Q5JST6 749 aa9.14□□□□□ -0.95
UBR1-208ENST00000569066 SAMD5Q5TGI4 173 aa9.14□□□□□ -0.95
UBR1-208ENST00000569066 MMP20O60882 483 aa9.13□□□□□ -0.95
UBR1-208ENST00000569066 EGFRP00533 1210 aa9.13□□□□□ -0.95
UBR1-208ENST00000569066 USP17L7P0C7H9 530 aa9.13□□□□□ -0.95
UBR1-208ENST00000569066 CES1P23141 567 aa9.13□□□□□ -0.95
UBR1-208ENST00000569066 PEAR1Q5VY43 1037 aaPredicted RBP9.13□□□□□ -0.95
UBR1-208ENST00000569066 NLRP13Q86W25 1043 aa9.13□□□□□ -0.95
UBR1-208ENST00000569066 BCO2Q9BYV7 579 aa9.13□□□□□ -0.95
UBR1-208ENST00000569066 PPP1R1BQ9UD71 204 aaPredicted RBP9.13□□□□□ -0.95
UBR1-208ENST00000569066 ACPPP15309 386 aa9.12□□□□□ -0.95
UBR1-208ENST00000569066 CRIPAKQ8N1N5 446 aa9.12□□□□□ -0.95
UBR1-208ENST00000569066 ATXN7O15265 892 aaPredicted RBP9.12□□□□□ -0.95
UBR1-208ENST00000569066 GADD45BO75293 160 aaPredicted RBP9.12□□□□□ -0.95
UBR1-208ENST00000569066 GRM2Q14416 872 aa9.12□□□□□ -0.95
UBR1-208ENST00000569066 GSX2Q9BZM3 304 aa9.12□□□□□ -0.95
UBR1-208ENST00000569066 METTL5Q9NRN9 209 aaKnown RBP9.12□□□□□ -0.95
UBR1-208ENST00000569066 DGAT1O75907 488 aa9.11□□□□□ -0.95
UBR1-208ENST00000569066 MAPTP10636 758 aaKnown RBP9.11□□□□□ -0.95
UBR1-208ENST00000569066 RACK1P63244 317 aaKnown RBP9.11□□□□□ -0.95
UBR1-208ENST00000569066 DBN1Q16643 649 aa9.11□□□□□ -0.95
UBR1-208ENST00000569066 ABHD17AQ96GS6 310 aa9.11□□□□□ -0.95
UBR1-208ENST00000569066 KCNH4Q9UQ05 1017 aa9.11□□□□□ -0.95
UBR1-208ENST00000569066 BNIP3LO60238 219 aa9.11□□□□□ -0.95
UBR1-208ENST00000569066 TRPA1O75762 1119 aa9.11□□□□□ -0.95
UBR1-208ENST00000569066 VEGFBP49765 207 aa9.11□□□□□ -0.95
UBR1-208ENST00000569066 COL13A1Q5TAT6 717 aaPredicted RBP9.11□□□□□ -0.95
UBR1-208ENST00000569066 GALNT12Q8IXK2 581 aa9.11□□□□□ -0.95
UBR1-208ENST00000569066 SREK1Q8WXA9 508 aaKnown RBP9.11□□□□□ -0.95
UBR1-208ENST00000569066 TINF2Q9BSI4 451 aa9.11□□□□□ -0.95
UBR1-208ENST00000569066 F6X3S4 739 aa9.1□□□□□ -0.95
UBR1-208ENST00000569066 FAM157BP0CG42 384 aa9.1□□□□□ -0.95
UBR1-208ENST00000569066 CD33P20138 364 aa9.1□□□□□ -0.95
UBR1-208ENST00000569066 KCNQ4P56696 695 aa9.1□□□□□ -0.95
UBR1-208ENST00000569066 NUCKS1Q9H1E3 243 aaKnown RBP9.1□□□□□ -0.95
UBR1-208ENST00000569066 SLC35F4A4IF30 521 aa9.1□□□□□ -0.95
UBR1-208ENST00000569066 NFKB1P19838 968 aa9.1□□□□□ -0.95
UBR1-208ENST00000569066 TNP2Q05952 138 aa9.1□□□□□ -0.95
UBR1-208ENST00000569066 SLC30A3Q99726 388 aa9.1□□□□□ -0.95
UBR1-208ENST00000569066 NRG2O14511 850 aaPredicted RBP9.09□□□□□ -0.95
UBR1-208ENST00000569066 RARAP10276 462 aa9.09□□□□□ -0.95
UBR1-208ENST00000569066 TTC39BQ5VTQ0 682 aaPredicted RBP9.09□□□□□ -0.95
UBR1-208ENST00000569066 GLIS3Q8NEA6 775 aa9.09□□□□□ -0.95
UBR1-208ENST00000569066 PCDHGC4Q9Y5F7 938 aa9.09□□□□□ -0.95
UBR1-208ENST00000569066 FAM8A1Q9UBU6 413 aa9.08□□□□□ -0.96
UBR1-208ENST00000569066 FBXO24O75426 580 aa9.08□□□□□ -0.96
UBR1-208ENST00000569066 CCINQ13939 588 aa9.08□□□□□ -0.96
UBR1-208ENST00000569066 CCDC155Q8N6L0 562 aa9.08□□□□□ -0.96
UBR1-208ENST00000569066 TGIF2Q9GZN2 237 aa9.08□□□□□ -0.96
UBR1-208ENST00000569066 CCSER2Q9H7U1 834 aa9.08□□□□□ -0.96
UBR1-208ENST00000569066 COPRSQ9NQ92 184 aa9.08□□□□□ -0.96
UBR1-208ENST00000569066 A0A1W2PP55 124 aa9.07□□□□□ -0.96
UBR1-208ENST00000569066 FRMD6Q96NE9 622 aa9.07□□□□□ -0.96
UBR1-208ENST00000569066 NSUN5Q96P11 429 aaKnown RBP9.07□□□□□ -0.96
UBR1-208ENST00000569066 HHIPQ96QV1 700 aa9.07□□□□□ -0.96
UBR1-208ENST00000569066 CAPN10Q9HC96 672 aa9.07□□□□□ -0.96
UBR1-208ENST00000569066 SALL4Q9UJQ4 1053 aa9.07□□□□□ -0.96
UBR1-208ENST00000569066 C3orf58Q8NDZ4 430 aa9.07□□□□□ -0.96
UBR1-208ENST00000569066 OR13H1Q8NG92 308 aa9.07□□□□□ -0.96
UBR1-208ENST00000569066 CNTNAP3BQ96NU0 1288 aa9.07□□□□□ -0.96
UBR1-208ENST00000569066 CNTNAP3Q9BZ76 1288 aa9.07□□□□□ -0.96
UBR1-208ENST00000569066 SUV39H2Q9H5I1 410 aa9.07□□□□□ -0.96
UBR1-208ENST00000569066 NDFIP2Q9NV92 336 aa9.07□□□□□ -0.96
UBR1-208ENST00000569066 GGT7Q9UJ14 662 aa9.07□□□□□ -0.96
UBR1-208ENST00000569066 EPB41L3Q9Y2J2 1087 aaPredicted RBP9.07□□□□□ -0.96
UBR1-208ENST00000569066 USP31Q70CQ4 1352 aa9.06□□□□□ -0.96
UBR1-208ENST00000569066 SPEM2Q0P670 501 aa9.06□□□□□ -0.96
UBR1-208ENST00000569066 USP48Q86UV5 1035 aa9.06□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms